|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015043 ID=TCONS_00015043|Name=TCONS_00015043|organism=Clytia hemisphaerica|type=transcript|length=5161bpRun BLAST on NCBI protein sequence of TCONS_00015043-protein >TCONS_00015043-protein ID=TCONS_00015043-protein|Name=TCONS_00015043-protein|organism=Clytia hemisphaerica|type=polypeptide|length=304bp MLKQYPKKTIEIDKESDKGITFRIHNNNSHVQTVNVEKNPTKGGSSDNTKRun BLAST on NCBI transcript from alignment at sc0000203:421126..438969+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015043 ID=TCONS_00015043|Name=TCONS_00015043|organism=Clytia hemisphaerica|type=transcript|length=17844bp|location=Sequence derived from alignment at sc0000203:421126..438969+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000203:421126..438969+ >TCONS_00015043 ID=TCONS_00015043|Name=TCONS_00015043|organism=Clytia hemisphaerica|type=CDS|length=5490bp|location=Sequence derived from alignment at sc0000203:421126..438969+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00015043 vs. Swiss-Prot (Human)
Match: B4GT2 (Beta-1,4-galactosyltransferase 2 OS=Homo sapiens GN=B4GALT2 PE=1 SV=1) HSP 1 Score: 234.187 bits (596), Expect = 7.998e-67 Identity = 103/220 (46.82%), Postives = 152/220 (69.09%), Query Frame = 3
Query: 1290 VAIIIPYRKRFEQLKIFLRHMHPFLQRQELLYQIFVVEQLKNDPFNRAGLFNVGFVESLKMNKGFDCFIFTDVDLLPEDDHNYYGCPTSPRHMSVAVDKFNYRLPYATIFGGVGAFTKEDFQRINGFSNMFWGWGGEDDDLYTRITKVGFKLTRPSLKRGRYTMIRIHHFQSSKADPNRMNLLRNSAQRMSADGLNTLKYKLDKVDQQPLVTFVKIELKR 1949
VA+IIP+R R L+ +L ++HP L+RQ L Y ++V+ Q D FNRA L NVGF+E+LK + +DCFIF+DVDL+P DD N Y C PRH ++A+DKF +RLPYA FGGV +K F RINGF N +WGWGGEDDD++ RI+ G K++RP ++ GRY MI+ + ++ +P R ++N+ M DG+ +++Y++ +V +QPL T + +++ R
Sbjct: 145 VAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGVYVINQHGEDTFNRAKLLNVGFLEALKEDAAYDCFIFSDVDLVPMDDRNLYRCGDQPRHFAIAMDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPNEYWGWGGEDDDIFNRISLTGMKISRPDIRIGRYRMIKHDRDKHNEPNPQRFTKIQNTKLTMKRDGIGSVRYQVLEVSRQPLFTNITVDIGR 364 HSP 2 Score: 206.453 bits (524), Expect = 2.748e-57 Identity = 98/219 (44.75%), Postives = 136/219 (62.10%), Query Frame = 1
Query: 637 LPTDKPVTPAPTPKKNNVLPDCSDKGSKLVGPLFIDQSIPKDMEAVEKDLSVDFGGTVEKGGKWAPTTCKPKHKVAIIIPYRKRVVQLKSFLKHMHPFLQKQLLDYRIFIIEQLYKDPFNRAGLFNIGFVEALKLDKEFDCFVFTDVDLLPEDDRNFYNCPTSPRHMSVAIDKFHYQLPYATIFGGCGSFLRDDFEKINGFSNLFFGWGGEDDDLYKRL 1293
LP P PT LP C D LVG L I+ + P +E V+++ V GG++ P C P VA+IIP+R R L+ +L ++HP L++Q L Y +++I Q +D FNRA L N+GF+EALK D +DCF+F+DVDL+P DDRN Y C PRH ++A+DKF ++LPYA FGG + F +INGF N ++GWGGEDDD++ R+
Sbjct: 79 LPEVPSALPGPTAP---TLPPCPDSPPGLVGRLLIEFTSPMPLERVQRE-----NPGVLMGGRYTPPDCTPAQTVAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGVYVINQHGEDTFNRAKLLNVGFLEALKEDAAYDCFIFSDVDLVPMDDRNLYRCGDQPRHFAIAMDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPNEYWGWGGEDDDIFNRI 289 The following BLAST results are available for this feature:
BLAST of TCONS_00015043 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.