TCONS_00015040 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015040
Unique NameTCONS_00015040
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length932

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015040 ID=TCONS_00015040|Name=TCONS_00015040|organism=Clytia hemisphaerica|type=transcript|length=932bp
CTGTAGCATTATGTCTCTTTTGATCGTAAAAATATAGGAATATAAAGTCA
CGTATGTAACACTCGGAATTGTCGGAATGCGGGTCGGAATGCCAAAGACT
ACTggtattttgattgatttgagtGGAACAATCCATATAGGAGATAAACT
CATTGGAAAAAGCAAAGAAGCGATCCAAAAGCTAAACAATGCCCAACTAC
CATACATGTTTGTCTCAAACACAACCAAAGAATCGAAAAACAGCTTACAT
ACACGTCTCAACAAGCTTGGTTTAAACATTCCCAAAGAAAAGATCTTCAC
ATCACTCACAGCTACATATGATTACTTAGCACGGAATAGTTTACGTCCGT
ACAGCCTCTTATCGAAAGATGCTTTGCTTGATTTTGAAGACCTCCCGAAG
GAGGATCCGAACTGTGTGGTGATTGGATTAGCTCCTGAAATGTTCTCGTA
TGAAGAAATGAACAAAGCATTTCAGCATGTTTTAAATGGTTGTCAAATCA
TTGCAGCACACAAAGCACGTTATTATCCAGCTAAAGATGAAGTCCTACGA
CTAGGCCCTGGACCCTTCGTATCAGCCTTAGAATATGCTTGCAGTAAAGA
GGCTAAAGTCATTGGCAAACCATCTCCAAACTTCTTTCAATCAGCTCTGG
ATATTTTGGGGAATCCAGATGTCAGTTACATGATTGGTGATtgtgcaaaa
gacGACATTGAAGGTTCGCAAAGAATGGGTATCCATGGTATCCTTGTTAA
AACAGgcAAATATCAAACAGGCGATGAAGACAGTTCGGAAAAGAAGCCAC
ATTTCGTTGCAGAGGATTTCAGTGAAGCTGTTGAATTTATATTAAATCAA
AAGatgtaaaattttataaaaaccaagCTATCCAATTCCTTGTCATATAG
ATATTATTTACAATAATCTTAGTTAATACTTT
Run BLAST on NCBI

protein sequence of TCONS_00015040-protein

>TCONS_00015040-protein ID=TCONS_00015040-protein|Name=TCONS_00015040-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MRVGMPKTTGILIDLSGTIHIGDKLIGKSKEAIQKLNNAQLPYMFVSNTT
KESKNSLHTRLNKLGLNIPKEKIFTSLTATYDYLARNSLRPYSLLSKDAL
LDFEDLPKEDPNCVVIGLAPEMFSYEEMNKAFQHVLNGCQIIAAHKARYY
PAKDEVLRLGPGPFVSALEYACSKEAKVIGKPSPNFFQSALDILGNPDVS
YMIGDCAKDDIEGSQRMGIHGILVKTGKYQTGDEDSSEKKPHFVAEDFSE
AVEFILNQKM
Run BLAST on NCBI

transcript from alignment at sc0000203:294901..302521+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015040 ID=TCONS_00015040|Name=TCONS_00015040|organism=Clytia hemisphaerica|type=transcript|length=7621bp|location=Sequence derived from alignment at sc0000203:294901..302521+ (Clytia hemisphaerica)
CTGTAGCATTATGTCTCTTTTGATCGTAAAAATATAGGAATATAAAGTCA
CGTATGTAACACTCGGAATTGTCGGAATGCGGGTCGGAATGCCAAAGACT
ACTggtattttgattgatttgagtGGAACAATCCATATAGGAGATAAACT
CATTGGAAAAAGCAAAGAAGCGATCCAAAAGTAagacctttttatttttg
ttacagACGAATATTGACTAATAAGTGTCTGACACTTATTATAGATTAGC
TCGACGAAATTTATTTAAGGTCTGGCCCGAATGTTTGACTGCTGAAATCA
AACGAATAAAGTGGGAGATACTAAAAAAACCTCCCACAAAATTATAATAT
CAAAGAATTTAGGGAAGTAACATTTTGTTGATTTGGCGCTCGATAAAACT
TTGGCGGGAAAACATGGTGAACGCACGATGTGCGCGTTATTTTTTTTCGC
GACAAAACCCCTGTCAggatagtctagcaagctagacaacTAATTCAGag
attcagacatagtagaaataaagcaaaaagtaacggagggaacaatttta
tacaaactaaattctGTAACAATATAATCATCATCATAATAACGCCTTAT
ATGTGATTGATGTATATTTACACGCATTAATATAAactaaacgactccag
tctactgtCAGCCcgagggggggggcactcgtatgatctggcctacgtca
tgtgccgcgcttaagggtgggattttcccaagcttcttcttttATGCAGA
TTTACAGCCGAgaagaaatatagtgcactataagggttgggtaaatcacg
agaaaatgcactgaaagggtaccttttcagccatattgaactgcactgta
agggtacgattttgaaaagcagattttgcgcggcacataccgtcgtttcg
aaatcgaatGCCCCCCCCGGAACTGTCAGGACAACTCGGGAAAAGTAATA
GtaaaattgcgtgatatcgtgatcagagtttcCTTGGGAGCCTCTgataa
tgaaaagaaaacaggaCTTATTCTTCTGAATTGCGTCCATTCAGTTGTGT
TGTATTCCTCATATGAGAATTGATTTGTATATTTAAAGTGGCTGAGCTTA
GTAGTTACTTTTCCACTCAGGATTGGTTCATACCTCTAGTTCAGTGAGAA
GAAGGAAAGGTGGCGGCTCTAACTGGTGTGATAAGGTGTTTTTCAAAGAA
CGAAACCAACATTGTTACCAACATTTGCAgtaaataccctagaatttcag
cccactgaaatttaatgtttaataATTGtattccaaaaccatccccactg
aattttttaaccttggaacaatagaatttctatcccttTNaaattgtact
ccaaaaccatccccactgaatttttaaccttggaacaatagaatttctat
cccttTTGGGATTTCAGTAGGAATTTTAATCCCCGATAAGAAAAAAagtc
ccaccggggctgtgagacaggggtgtagtaaACAAAGTAACTCTGAAATA
TTAGAAATAAATGTTTTTCATCCCAACTTCTTGTTAAACTAACACCAACT
CGATTGACATGGCGATGTTTAAGGTTTTAACTAGTGAAATTACTTACCAT
TCCTCTAATTTAGTGCGACCgattaaataattattttgaaggaGCCTTAC
TAATTTTGAATCTGCTACTACAAAAGAATTATAGGAAATTTGTTGGGGAA
ACTCCACACTAAATTAGATGAAGATCGATAAAAAGTACCTGTACTAATAT
TCAGAGGAAAATAATCAAGaagagctttcaaaataaaacatacgTAATAT
AGGGGATGAAGATGATTTTCGAATTTTATCAGGAAATCTTTGTCAAAATA
TCAAAAGGcgttttttttacagaattctcattttactcattttaatattt
catgaaaaatactaaaaatcgTTTTTCGTTGACAATAAATGGCGCCTTCC
ATCTATACTCGTCGATTTGAACTAAATCATTATGTAGAGTGTTATCATGA
GGATGTAACAGTCGTTTCAGTTTCAAATTTTCCGCTCGCCACTCATCCGC
ACTGCCATGACCATCATAAAGACCTACATAATGTCGAATGTCAATAACTG
GCTTTTTGTATGGAAAAGACCATGTATTTAAAATCTTAATaatcaaaatg
tttttgctAGTGTTCATGATACAGCTGAATAATGACACATCAACTCCACA
TCTGAGTTCTTCTAACATTTCAGCATACCAAGAAGCATAGCCTggacatt
tgaaaatttctaatgtGAAACCGGACCCTGTATTGGCCAAATGAATTAAT
TTCATAAACCTATTGGAAGACTCTTCTTCCccactttttctttttaatgg
atCATCTCTCACTGGCTCGTTTTCCTCTTCTGAGTCGAATCTACGGTCGA
AAAACCAAACCTTCCTCTGTTGCGACTCTTGCTTCACATTATTTTTTGGT
GGAGTAGCACATGATGATAATTTATCATCACCAATTTGAGTTTTGTTCAA
TTTCTCAACCAAtgtgacattttctttttcaattttcaacatcttttctt
CAAGATGGCTCAATCTCTCTTTCAAAGCAGTATTTTCATTTACTACTTTT
AATCTTTCATCCTGCAAAGTCGTATGTTCAATTTTCAAGTCCTTTAATTC
GTTTTGCACTTTTAAAAGAGCAACTTCAGATTTTAAGTTTTGCATTTTAT
GTTCacctttcaatttttcgattgtCCATTGAAGTCCTGCATTTTGGATT
TTGTAATCAACTCTGTCATTTGTATTTAATACCGTATTAAATTGGTCAAG
GTGTTCATTCTGTCCAGTTTGATCATCCAATGTAAATCGTTTAAAAGCGT
CATTTCCAGATTCTCCAAACTGGCTTTTATCATTGAATCTATTAGCTTTT
GCCATACCTTTCCATAAAGACTATCAACCTTAAACACTAATAAATCTAAT
ACAAATCGAATCTTTATCTCTTCATTTGATATTGTCTATTTGAGATTTAA
CTCTAAAAAAATGTACCATCATGGAAAATTTGTTGCCTTTTAAAACTATC
ACTTTCTCCTTAGTAGAGGAAAAAATGATCActgcatcaaaataaacagt
aATATAAAACCAAGAATTGTTCTCGAATTTAATGTATTGTTTTCGCACAG
CAAGATTTTGTCATTATAAACAAAATGTTTGATGCTTTTATTTGGTCtac
aatataaacaaaacaacgaaaaaaacttttatacgAACACTGGTgatgtt
acacgctttttttttataagaatggtgtaaatccattaatatgatcatgg
atattcttaacttttttgggaaaatcatcctaaaatattgttacagcatt
cttaggttaggatcctaattcagactagatttaacatttagtacatgcGT
CTCTCTTAAATGGtatttgtgaaaggagtgagccttatttgggggtaatt
gataatttataattgaaaatgctctaaaaattgcattcttagcttcagtt
gtcaaattccatgatggtggtattcttagcatattcttaattttttggcc
attctcatcatggacattctttgccaccggaggaagcctaaagcttctga
ggatggcattcatagcttcacgcataaggaagttgggcaaacatctcata
attttgcgcgcgtttttcagtatttNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNttctgggaaattccctttttataccacaagtagttattaagcgctct
tcataggttaaaaatattactctacttaaagtattcgaacagttatgttg
ctaaacgcGTGCATTAGTTAAATAACGGCCGTAGCggccgtagtacagtg
gtagtgcatccggctacggttcgcaaggttgtgggttcaacccccagccg
ggtcataccaaagattcccaaaatggtacttgatgcctctctgcttgatg
ctcagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccctaccttcgggtagatag
ctatcgaaagaggagccttcggttcgcctccgactgcggtcgcagactta
cttacttactagataacatatgaagagcagtatctttagatatatatacg
ctttttataggaaaaaacaGTAAGTCATACGATTCTGGCTGGactgctct
taaatttatatgagtttttcagccttaaatgtcaatattaattaaagcgg
aaacatgtacttctcagtaatttctgaaatctgagtttcagattcttctt
aatttgttcttaggttttggccaaatttcaaccTCGTattattatgaaat
tgtttttataaaaaacgtgtaagacaaggcacagatgtcactctaagtag
actgtaaatcactcccttgacacatttgttagcatttgaaaaaattttgt
ctcagatgagaggtcactcttaacaaaaattactgtagggctaagatcat
tccttttggacgcaaattcaactctatgtgttcgttttgctgcggtggca
ccttaatgaaagttatggctagtataaagtgtattcttataaaataagcg
TGTACTTTATTACCTGCTAAATACTTATGCTGCTTGGAAGTCAGTCAAAA
TTCGAAGCAGTAAAAGATGAAAGAAAAGTCATGCAATAAAATGATCAACA
CTTTAAAGGAATCCCCTTCCTCAAGGATAAACATAGGCTAAACACCTCAC
AGATAAGAGGAAAGTTTTGTCCGAGAATGttctttaatgggataaatttt
cgcaggGATTAGATTCCGCGGATTTTGGTGTCGTTCGCAAAaagtcccaa
tggaaaattTCTTGAACAGAACTCAAAACATGTCAGATGATTACTTTTAA
AATGTTAACTGGCAttaaagaagcgctaataatgcgtatttcaacaacca
gtatgtataatttggcagtaaaaagacacaaaatcaTACAAATTCTAATT
AATTAAAAGTCAATGAACTGATGATCACTATATCAGGAAATACAGAGATG
GACATAAAAAATCTACCAAGACAAATTTGCGTAAATTCGTAAAGCAGTTT
GGACATTCTTTTTGTAGTGGATATTTTCCCTTTCTTTTCTTCACAGGCTA
AACAATGCCCAACTACCATACATGTTTGTCTCAAACACAACCAAAGAATC
GAAAAACAGCTTACATACACGTCTCAACAAGCTTGGTTTAAACATTCCCA
AAGAAAAGATCTTCACATCACTCACAGCTACATATGATTACTTAGCACGG
AATAGTTTACGTCCGTACAGCCTCTTATCGAAAGATGCTTTGCTTGATTT
TGAAGACCTCCCGAAGGAGGATCCGAACTGTGTGGTGATTGGATTAGCTC
CTGAAATGTTCTCGTATGAAGAAATGAACAAAGCATTTCAGTAAGTCGTT
TTTTAGATAGGCTGTGAGTTGTAGACTCCACAAAGTATTCCCAGTTCTTG
AAACGATTCgccagaaaaaaaatcttttttatgggCTTATACAATGAATT
ATCGATCCAGAACTAGGATCTTGATCATATAGTTAAGGTAAGGGAAACCC
GTTTGGAAGTTTGGACCTTTCCTTTAACAGtggttttaaaatctttaaat
gtTTCTCTTTATTTCAGGCATGTTTTAAATGGTTGTCAAATCATTGCAGC
ACACAAAGCACGTTATTATCCAGCTAAAGATGAAGTCCTACGACTAGGCC
CTGGACCCTTCGTATCAGCCTTAGAATATGCTTGCAGTAAAGAGGCTAAA
GTCATTGGCAAACCATCTCCAAACTTCTTTCAATCAGCTCTGGATATTTT
GGGGAATCCAGATGTCAGTTACATGATTGGTGATGTATGTTTGGAAATTC
AAATAATTATTCCAGAAATATCTTTTcaagtaccttaaaggaagaaattt
tggcgggaatttaatttggcggatgaccgAATAGTTTTTTCAGAgcgaat
ttaatttggcggatggctggGAAAATTAAATTcggagggaatttaatttg
gcggatggaggaaaaagtaaattttggtagaaacttaatttggcggattt
tggctaaatccgccaaaatctcttcctttaaggtagattGGTAGCTTGAA
CAACAATAAAATCTGTTATGAAAACTAGATTAGTGAAAGCGAAAAACCCT
CAACTATTTCTCCAGTTTTATGACTAGTAATATGTAGGGTCAGCAATTCG
GAAAGTGCATCGAGGAGTAAATTATAGAATGAAATATGATACTTACAACA
AAAACTTGACCAAAACCTTTTCTTATGGTACCCAGTCCTGTCGATCCTGT
AACCAGATTCTTTATCCAAAACAATACGATTATTTGGTTTGCCCGTTtca
tttttgaattctatttatAATCCTGAAATATAGAAATAAGGACTTACAAT
CTAAAATGCTCATACTCATTttatcaagtgtgcaaaagacGACATTGAAG
GTTCGCAAAGAATGGGTATCCATGGTATCCTTGTTAAAACAGGTAGGTAC
CAAAGATGACTGGCCCCAGCAatagacattttcataaattacgtcacgaa
caccacttgcctcgtattcaaacaattaccaccATGGTAattatatccct
tgagacattaaatgacttttttatgaatagaaagtagtaataaaatccgc
tgggagtaaGTCACCCTGGCAATAATTTcgaaacgaggcaagtgatgttc
gtgaggtaatttatgaaaagatctcTATTACTTTTCAGAAGGCACCCTCT
AACCAACCACAAGATTCTTTTCCAAAAAGTGTCACAACCTTTCATTTACC
TTCAGTCTTTTCTTTCTAAAAATTAGTAAAACGCGTTCTAAAATCTTCTA
AGAATTTACGTATTGTGGTGGAGCCTCTAATTGGCGGATATCATCGGGGA
AACGTGTACTGGATTTTGAAATTAGGTCTAAAGCCCTTAATATAGGGATA
CTTATCAGAGGTgaccgccttttagagtgtctaTCAATTAGAAGTTTTAC
TGCAAATTCAGATCATTAttaacaatttaatttttttttcttaggcAAAT
ATCAAACAGGCGATGAAGACAGTTCGGAAAAGAAGCCACATTTCGTTGCA
GAGGATTTCAGTGAAGCTGTTGAATTTATATTAAATCAAAAGatgtaaaa
ttttataaaaaccaagCTATCCAATTCCTTGTCATATAGATATTATTTAC
AATAATCTTAGTTAATACTTT

Coding sequence (CDS) from alignment at sc0000203:294901..302521+

>TCONS_00015040 ID=TCONS_00015040|Name=TCONS_00015040|organism=Clytia hemisphaerica|type=CDS|length=3915bp|location=Sequence derived from alignment at sc0000203:294901..302521+ (Clytia hemisphaerica)
ATGCGGGTCGGAATGCCAAAGACTACTggtattttgattgatttgagtGG
AACAATCCATATAGGAGATAAACTCATTGGAAAAAGCAAAGAAGCGATCC
AAAAGCTAAACAATGCCCAACTACCATACATGTTTGTCTCAAACACAACC
AAAGAATCGAAAAACAGCTTACATACACGTCTCAACAAGCTTGGTTTAAA
CATTCCCAAAGAAAAGATCTTCACATCACTCACAGCTACATATGATTACT
TAGCACGGAATAGTTTACGTCCGTACAGCCTCTTATCGAAAGATGCTTTG
CTTGATTTTGAAGACCTCCCGAAGGAGGATCCGAACTGTGTGGTGATTGG
ATTAGCTCCTGAAATGTTCTCGTATGAAGAAATGAACAAAGCATTTCAGC
ATGTTTTAAATGGTTGTCAAATCATTGCAGCACACAAAGCACGTTATTAT
CCAGCTAAAGATGAAGTCCTACGACTAGGCCCTGGACCCTTCGTATCAGC
CTTAGAATATGCTTGCAGTAAAGAGGCTAAAGTCATTGGCAAACCATCTC
CAAACTTCTTTCAATCAGCTCTGGATATTTTGGGGAATCCAGATGTCAGT
TACATGATTGGTGATtgtgcaaaagacGACATTGAAGGTTCGCAAAGAAT
GGGTATCCATGGTATCCTTGTTAAAACAGgcAAATATCAAACAGGCGATG
AAGACAGTTCGGAAAAGAAGCCACATTTCGTTGCAGAGGATTTCAGTGAA
GCTGTTGAATTTATATTAAATCAAAAGatgtaaATGCGGGTCGGAATGCC
AAAGACTACTggtattttgattgatttgagtGGAACAATCCATATAGGAG
ATAAACTCATTGGAAAAAGCAAAGAAGCGATCCAAAAGCTAAACAATGCC
CAACTACCATACATGTTTGTCTCAAACACAACCAAAGAATCGAAAAACAG
CTTACATACACGTCTCAACAAGCTTGGTTTAAACATTCCCAAAGAAAAGA
TCTTCACATCACTCACAGCTACATATGATTACTTAGCACGGAATAGTTTA
CGTCCGTACAGCCTCTTATCGAAAGATGCTTTGCTTGATTTTGAAGACCT
CCCGAAGGAGGATCCGAACTGTGTGGTGATTGGATTAGCTCCTGAAATGT
TCTCGTATGAAGAAATGAACAAAGCATTTCAGCATGTTTTAAATGGTTGT
CAAATCATTGCAGCACACAAAGCACGTTATTATCCAGCTAAAGATGAAGT
CCTACGACTAGGCCCTGGACCCTTCGTATCAGCCTTAGAATATGCTTGCA
GTAAAGAGGCTAAAGTCATTGGCAAACCATCTCCAAACTTCTTTCAATCA
GCTCTGGATATTTTGGGGAATCCAGATGTCAGTTACATGATTGGTGATtg
tgcaaaagacGACATTGAAGGTTCGCAAAGAATGGGTATCCATGGTATCC
TTGTTAAAACAGgcAAATATCAAACAGGCGATGAAGACAGTTCGGAAAAG
AAGCCACATTTCGTTGCAGAGGATTTCAGTGAAGCTGTTGAATTTATATT
AAATCAAAAGatgtaaATGCGGGTCGGAATGCCAAAGACTACTggtattt
tgattgatttgagtGGAACAATCCATATAGGAGATAAACTCATTGGAAAA
AGCAAAGAAGCGATCCAAAAGCTAAACAATGCCCAACTACCATACATGTT
TGTCTCAAACACAACCAAAGAATCGAAAAACAGCTTACATACACGTCTCA
ACAAGCTTGGTTTAAACATTCCCAAAGAAAAGATCTTCACATCACTCACA
GCTACATATGATTACTTAGCACGGAATAGTTTACGTCCGTACAGCCTCTT
ATCGAAAGATGCTTTGCTTGATTTTGAAGACCTCCCGAAGGAGGATCCGA
ACTGTGTGGTGATTGGATTAGCTCCTGAAATGTTCTCGTATGAAGAAATG
AACAAAGCATTTCAGCATGTTTTAAATGGTTGTCAAATCATTGCAGCACA
CAAAGCACGTTATTATCCAGCTAAAGATGAAGTCCTACGACTAGGCCCTG
GACCCTTCGTATCAGCCTTAGAATATGCTTGCAGTAAAGAGGCTAAAGTC
ATTGGCAAACCATCTCCAAACTTCTTTCAATCAGCTCTGGATATTTTGGG
GAATCCAGATGTCAGTTACATGATTGGTGATtgtgcaaaagacGACATTG
AAGGTTCGCAAAGAATGGGTATCCATGGTATCCTTGTTAAAACAGgcAAA
TATCAAACAGGCGATGAAGACAGTTCGGAAAAGAAGCCACATTTCGTTGC
AGAGGATTTCAGTGAAGCTGTTGAATTTATATTAAATCAAAAGatgtaaA
TGCGGGTCGGAATGCCAAAGACTACTggtattttgattgatttgagtGGA
ACAATCCATATAGGAGATAAACTCATTGGAAAAAGCAAAGAAGCGATCCA
AAAGCTAAACAATGCCCAACTACCATACATGTTTGTCTCAAACACAACCA
AAGAATCGAAAAACAGCTTACATACACGTCTCAACAAGCTTGGTTTAAAC
ATTCCCAAAGAAAAGATCTTCACATCACTCACAGCTACATATGATTACTT
AGCACGGAATAGTTTACGTCCGTACAGCCTCTTATCGAAAGATGCTTTGC
TTGATTTTGAAGACCTCCCGAAGGAGGATCCGAACTGTGTGGTGATTGGA
TTAGCTCCTGAAATGTTCTCGTATGAAGAAATGAACAAAGCATTTCAGCA
TGTTTTAAATGGTTGTCAAATCATTGCAGCACACAAAGCACGTTATTATC
CAGCTAAAGATGAAGTCCTACGACTAGGCCCTGGACCCTTCGTATCAGCC
TTAGAATATGCTTGCAGTAAAGAGGCTAAAGTCATTGGCAAACCATCTCC
AAACTTCTTTCAATCAGCTCTGGATATTTTGGGGAATCCAGATGTCAGTT
ACATGATTGGTGATtgtgcaaaagacGACATTGAAGGTTCGCAAAGAATG
GGTATCCATGGTATCCTTGTTAAAACAGgcAAATATCAAACAGGCGATGA
AGACAGTTCGGAAAAGAAGCCACATTTCGTTGCAGAGGATTTCAGTGAAG
CTGTTGAATTTATATTAAATCAAAAGatgtaaATGCGGGTCGGAATGCCA
AAGACTACTggtattttgattgatttgagtGGAACAATCCATATAGGAGA
TAAACTCATTGGAAAAAGCAAAGAAGCGATCCAAAAGCTAAACAATGCCC
AACTACCATACATGTTTGTCTCAAACACAACCAAAGAATCGAAAAACAGC
TTACATACACGTCTCAACAAGCTTGGTTTAAACATTCCCAAAGAAAAGAT
CTTCACATCACTCACAGCTACATATGATTACTTAGCACGGAATAGTTTAC
GTCCGTACAGCCTCTTATCGAAAGATGCTTTGCTTGATTTTGAAGACCTC
CCGAAGGAGGATCCGAACTGTGTGGTGATTGGATTAGCTCCTGAAATGTT
CTCGTATGAAGAAATGAACAAAGCATTTCAGCATGTTTTAAATGGTTGTC
AAATCATTGCAGCACACAAAGCACGTTATTATCCAGCTAAAGATGAAGTC
CTACGACTAGGCCCTGGACCCTTCGTATCAGCCTTAGAATATGCTTGCAG
TAAAGAGGCTAAAGTCATTGGCAAACCATCTCCAAACTTCTTTCAATCAG
CTCTGGATATTTTGGGGAATCCAGATGTCAGTTACATGATTGGTGATtgt
gcaaaagacGACATTGAAGGTTCGCAAAGAATGGGTATCCATGGTATCCT
TGTTAAAACAGgcAAATATCAAACAGGCGATGAAGACAGTTCGGAAAAGA
AGCCACATTTCGTTGCAGAGGATTTCAGTGAAGCTGTTGAATTTATATTA
AATCAAAAGatgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008416XLOC_008416Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015040-exon-sc0000203-1491911889:294901..295080TCONS_00015040-exon-sc0000203-1491911889:294901..295080Clytia hemisphaericaexon
TCONS_00015040-exon-sc0000203-1510915933:294901..295080TCONS_00015040-exon-sc0000203-1510915933:294901..295080Clytia hemisphaericaexon
TCONS_00015040-exon-sc0000203-1575043694:294901..295080TCONS_00015040-exon-sc0000203-1575043694:294901..295080Clytia hemisphaericaexon
TCONS_00015040-exon-sc0000203-1491911889:300397..300690TCONS_00015040-exon-sc0000203-1491911889:300397..300690Clytia hemisphaericaexon
TCONS_00015040-exon-sc0000203-1510915933:300397..300690TCONS_00015040-exon-sc0000203-1510915933:300397..300690Clytia hemisphaericaexon
TCONS_00015040-exon-sc0000203-1575043694:300397..300690TCONS_00015040-exon-sc0000203-1575043694:300397..300690Clytia hemisphaericaexon
TCONS_00015040-exon-sc0000203-1491911889:300918..301134TCONS_00015040-exon-sc0000203-1491911889:300918..301134Clytia hemisphaericaexon
TCONS_00015040-exon-sc0000203-1510915933:300918..301134TCONS_00015040-exon-sc0000203-1510915933:300918..301134Clytia hemisphaericaexon
TCONS_00015040-exon-sc0000203-1575043694:300918..301134TCONS_00015040-exon-sc0000203-1575043694:300918..301134Clytia hemisphaericaexon
TCONS_00015040-exon-sc0000203-1491911889:301729..301792TCONS_00015040-exon-sc0000203-1491911889:301729..301792Clytia hemisphaericaexon
TCONS_00015040-exon-sc0000203-1510915933:301729..301792TCONS_00015040-exon-sc0000203-1510915933:301729..301792Clytia hemisphaericaexon
TCONS_00015040-exon-sc0000203-1575043694:301729..301792TCONS_00015040-exon-sc0000203-1575043694:301729..301792Clytia hemisphaericaexon
TCONS_00015040-exon-sc0000203-1491911889:302345..302521TCONS_00015040-exon-sc0000203-1491911889:302345..302521Clytia hemisphaericaexon
TCONS_00015040-exon-sc0000203-1510915933:302345..302521TCONS_00015040-exon-sc0000203-1510915933:302345..302521Clytia hemisphaericaexon
TCONS_00015040-exon-sc0000203-1575043694:302345..302521TCONS_00015040-exon-sc0000203-1575043694:302345..302521Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015040-proteinTCONS_00015040-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000203supercontigsc0000203:294901..302521 +
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0490702	0	0.0555598	0	1.65435	1.15041	1.76645	1.18123	1.69537	2.97072	1.49144	2.54908	4.11201	2.84691	0.3065	0.059804	0.0368368	0.377565	0.260813	0.272922	0.806545	0.416546	0.112526	0.409209	3.42449	4.37283	0	0.287233	0.0544641	0.166471
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006357HAD-SF_hydro_IIA
IPR006355HAD-SF_hydro_IIA_hyp2
IPR023214HAD-like_dom
Blast
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BLAST of TCONS_00015040 vs. Swiss-Prot (Human)
Match: HDHD2 (Haloacid dehalogenase-like hydrolase domain-containing protein 2 OS=Homo sapiens GN=HDHD2 PE=1 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.621e-75
Identity = 122/250 (48.80%), Postives = 163/250 (65.20%), Query Frame = 2 
Query:  104 GILIDLSGTIHIGDKLIGKSKEAIQKLNNAQLPYMFVSNTTKESKNSLHTRLNKLGLNIPKEKIFTSLTATYDYLARNSLRPYSLLSKDALLDFEDLPKEDPNCVVIGLAPEMFSYEEMNKAFQHVLNGCQIIAAHKARYYPAKDEVLRLGPGPFVSALEYACSKEAKVIGKPSPNFFQSALDILG-NPDVSYMIGDCAKDDIEGSQRMGIHGILVKTGKYQTGDEDSSEKKPHFVAEDFSEAVEFILNQ 850
             +L+DLSGT+HI D  +  ++EA+++L  A +   FV+NTTKESK  L  RL KL  +I +++IFTSLTA    L R  +RP  L+   AL DF+ +   DPN VV+GLAPE F Y+ +N+AF+ +L+G  +IA HKARYY  KD  L LGPGPFV+ALEYA   +A V+GKP   FF  AL   G  P+ + MIGD  +DD+ G+Q +G+ GILVKTGKY+  DE+     P+   E F  AV+ IL  
Sbjct:    9 AVLVDLSGTLHIEDAAVPGAQEALKRLRGASVIIRFVTNTTKESKQDLLERLRKLEFDISEDEIFTSLTAARSLLERKQVRPMLLVDDRALPDFKGIQTSDPNAVVMGLAPEHFHYQILNQAFRLLLDGAPLIAIHKARYYKRKDG-LALGPGPFVTALEYATDTKATVVGKPEKTFFLEALRGTGCEPEEAVMIGDDCRDDVGGAQDVGMLGILVKTGKYRASDEEKINPPPYLTCESFPHAVDHILQH 257
The following BLAST results are available for this feature:
BLAST of TCONS_00015040 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HDHD25.621e-7548.80Haloacid dehalogenase-like hydrolase domain-contai... [more]
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