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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015032 ID=TCONS_00015032|Name=TCONS_00015032|organism=Clytia hemisphaerica|type=transcript|length=1544bp
ACCCTCCCTTTAAACATTTCCCATCATGTTGCACGTATTTAAAACAGATG
TTTATCGATTTTAAgctccacaagtaatgaacaaGAATTTCAAATGGTAA
CAAATTAAAAAGTGATCAACATCTTGTCTAAACTGGTTAGTTAAAATTAC
AAGCAAATTAAGTAATTTCCTATTTGCAAAAATGTAATCAAGAAATAACT
AAATTGGAAATTGGACGGCAATTTCCGAACTTCCTGATGGGTGTATAAAA
AGGGAGACGAATTCTGCAGAAAGTAGGACATATAATCAAAGGGCTGGGAA
TTTTGATCAGAGGTAGCAACAATGATGGGCAAACACTTCACGCTGACTAT
TTTTGCGTGTCTTATTTTTTACGCATGCGCTGTATCAGAACCGAGAAGAT
GCGATTTCTTTGGTAAAGGAGTCGTTTGTGAGGAACAAAATCTGATTGGA
TATTACGAATGTGACGGAACTGACTCTTTCGGTGCTTTCAGCGCATGCGG
ACCCAAACAAATCTGTTCATGTGGGTTTGATCGAAAATGTTCTGATGGTA
AGCCATTTTGTGTGGACCGGTCTCATTTCACGTCGCAGCAGGTGCCGTCN
TGATGGTAAGCTGTTTTGTGTGGACCGACCCCATTTTACGTCGCAGCAGG
TGCCACAAGACTTTACAGTCAGTTTCAATGGAGTTGTAAACACTTCATTC
CCGCAAGGATTCAACCGGGAGATTCTCTCCGGTGCTATTTGGATGGACTC
CACAGAAGGTGATGAGAAACAAAGAGTTTTAGTGTCACGTAAACGAATGA
ATGGGAAAGAATTCGAAAGACAATCACGAATCACGATCAGGAAGGATGGC
ATCTTCGTTCTGTACACTTTCACTCAACGCTTCAACGAGAGTTCACCTCA
AGAACAAGTAATCAATCAATTTTGCACACAATCCACTGTCACCATAAACG
AAGCAATCACATTCTACGATTTACGACGCTTCGCCGTAAAAGATTCTTCA
CGTAAAGACGAATACGTTCTACGTAACGGCCCTAGTTTCCCGCAAGGCGG
TTTCACTGAGAAACGATGGCGCTTTGGAAAGACACATTTCACACAACCCT
ATGTTCCAGTCTCCTTTCGAAGGTTCCAACAAGGAAGTCCGATTTCCAAA
ACAACAACAAGTTTAGAGTTGCGATATCATTATTTTTATACTGGCAAACC
TGATGTTAATCAATTCCGTATTCCGGAAATctgcaaaaagtatgcaaata
aCGGTAGACCAGCTGATGGtggtaaataaaaacaaaagtacaaatacaaa
tttttcaaaattataatttAAGGATAGCTTTTTAGAAAGttttatttcaa
tgatcttaagttatcaaaaatagcaacaacaaaattttccggccggtcac
atgagagcttttttccttcaccagcattccggaaacactaaatcttttta
tttttgcctaattttatttttttactttacatCTTTTTGTATAAATACAA
TTTCATTATCATTTCACTcattttgaattcaattttacttttta Run BLAST on NCBI protein sequence of TCONS_00015032-protein >TCONS_00015032-protein ID=TCONS_00015032-protein|Name=TCONS_00015032-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MVSHFVWTGLISRRSRCRXDGKLFCVDRPHFTSQQVPQDFTVSFNGVVNT
SFPQGFNREILSGAIWMDSTEGDEKQRVLVSRKRMNGKEFERQSRITIRK
DGIFVLYTFTQRFNESSPQEQVINQFCTQSTVTINEAITFYDLRRFAVKD
SSRKDEYVLRNGPSFPQGGFTEKRWRFGKTHFTQPYVPVSFRRFQQGSPI
SKTTTSLELRYHYFYTGKPDVNQFRIPEICKKYANNGRPADGGK Run BLAST on NCBI transcript from alignment at sc0000203:139580..142433+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015032 ID=TCONS_00015032|Name=TCONS_00015032|organism=Clytia hemisphaerica|type=transcript|length=2854bp|location=Sequence derived from alignment at sc0000203:139580..142433+ (Clytia hemisphaerica)
ACCCTCCCTTTAAACATTTCCCATCATGTTGCACGTATTTAAAACAGATG
TTTATCGATTTTAAgctccacaagtaatgaacaaGAATTTCAAATGGTAA
CAAATTAAAAAGTGATCAACATCTTGTCTAAACTGGTTAGTTAAAATTAC
AAGCAAATTAAGTAATTTCCTATTTGCAAAAATGTAATCAAGAAATAACT
AAATTGGAAATTGGACGGCAATTTCCGAACTTCCTGATGGGTGTATAAAA
AGGGAGACGAATTCTGCAGAAAGTAGGACATATAATCAAAGGGCTGGGAA
TTTTGATCAGAGGTAGCAACAATGATGGGCAAACACTTCACGCTGACTAT
TTTTGCGTGTCTTATTTTTTACGCATGCGCTGTATCAGAACCGAGAAGAT
GCGATTTCTTTGGTAAAGGAGTCGTTTGTGAGGAACAAAATCTGATTGGA
TATTACGAATGTGACGGAACTGACTCTTTCGGTGCTTTCAGCGCATGCGG
ACCCAAACAAATCTGTTCATGTGGGTTTGATCGAAAATGTTCTGATGGTA
AGCCATTTTGTGTGGACCGGTCTCATTTCACGTCGCAGCAGGTGCCGTCN
TGATGGTAAGCTGTTTTGTGTGGACCGACCCCATTTTACGTCGCAGCAGG
TGCCACAAGACTTTACAGTCAGTTTCAATGGAGTTGTAAACACTTCATTC
CCGCAAGGATTCAACCGGGAGATTCTCTCCGGTGCTATTTGGATGGACTC
CACAGAAGGTGATGAGAAACAAAGAGTTTTAGTGTCACGTAAACGAATGA
ATGGGAAAGAATTCGAAAGACAATCACGAATCACGATCAGGAAGGATGGC
ATCTTCGTTCTGGTAAGATTTGACGTATTTTCGCCGACTGTTTTTTATCA
TGCAGTAAGCTGGCTACCATTCAGTGTTCAAAACCACTTATTCACAATAG
TCACtcacctttatataccctggaccaaatttctcaatcccggcgaagca
aaatctttgattggagttttttgaaaagtggtatccttatcaatagcggt
gtaatcaaatgcatcgagagcacactagatctacttttcctcgaaaaatt
ttgatgatgtagcgccgttagacgcacagatatctgtaaagcccgaaggg
ctagatttgcagctttgttcaaaaagtgaagctcatctgtggaaggattt
cctaccaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNgcacgaaatttaaaaagtcaaattttagcttcacttt
tttttgctggagaaagcttaaagctgcaaatctagcccttcgggcttaga
tatctgtggttagacgttaatttttaacactgcaatggcttctttacggg
taccaattcaaaaaaaacttcgatcaaagatagcggatatagcttggtcc
agggatatataaaggtcagtgacaaTAGTCAAGATATTGAAGCACAGAAA
AGCTTTTAAGATACTCAAACGAGAATGCTCAGAACGTATTTATGAACTAT
ACTGAAGTATTCCAGGTTGTACTAGGTTCCCTGGGTTTTACTACTGTAGC
CTATACTCGGCGTCAAAGCTATATTTCTTCATTGTGACGTCTGTTTCATT
TTGCgtctttttcgaatgtttgtaGCAAAGGTTTTCCAAagatttttgac
gtcacttcaAACTTCCGAAGCCTTCCAAACTGGTGAAATATCCAGGTTTT
AtttagccagtaccttcccacaaaccaaattttttctctgTTAAATcacg
ataaaaaagcggttttcgtctaacaggctagatTTTATTAGGACTCCCTC
GTTTATCACTATTAAACGAGGTTGCGTTTGTCGAGAAAGGTATATAAAGA
TTATCCGTGTTCTTTGAGAAGTAAAAATCATCCATCTACAAAACCTCTTA
TGCTTAGTCAATAATTTTTCAGTACACTTTCACTCAACGCTTCAACGAGA
GTTCACCTCAAGAACAAGTAATCAATCAATTTTGCACACAATCCACTGTC
ACCATAAACGAAGCAATCACATTCTACGATTTACGACGCTTCGCCGTAAA
AGATTCTTCACGTAAAGACGAATACGTTCTACGTAACGGCCCTAGTTTCC
CGCAAGGCGGTTTCACTGAGAAACGATGGCGCTTTGGAAAGACACATTTC
ACACAACCCTATGTTCCAGTCTCCTTTCGAAGGTTCCAACAAGGAAGTCC
GATTTCCAAAACAACAACAAGTTTAGAGTTGCGATATCATTATTTTTATA
CTGGCAAACCTGATGTTAATCAATTCCGTATTCCGGAAATctgcaaaaag
tatgcaaataaCGGTAGACCAGCTGATGGtggtaaataaaaacaaaagta
caaatacaaatttttcaaaattataatttAAGGATAGCTTTTTAGAAAGt
tttatttcaatgatcttaagttatcaaaaatagcaacaacaaaattttcc
ggccggtcacatgagagcttttttccttcaccagcattccggaaacacta
aatctttttatttttgcctaattttatttttttactttacatCTTTTTGT
ATAAATACAATTTCATTATCATTTCACTcattttgaattcaattttactt
ttta Coding sequence (CDS) from alignment at sc0000203:139580..142433+ >TCONS_00015032 ID=TCONS_00015032|Name=TCONS_00015032|organism=Clytia hemisphaerica|type=CDS|length=1470bp|location=Sequence derived from alignment at sc0000203:139580..142433+ (Clytia hemisphaerica)
ATGGTAAGCCATTTTGTGTGGACCGGTCTCATTTCACGTCGCAGCAGGTG
CCGTCNTGATGGTAAGCTGTTTTGTGTGGACCGACCCCATTTTACGTCGC
AGCAGGTGCCACAAGACTTTACAGTCAGTTTCAATGGAGTTGTAAACACT
TCATTCCCGCAAGGATTCAACCGGGAGATTCTCTCCGGTGCTATTTGGAT
GGACTCCACAGAAGGTGATGAGAAACAAAGAGTTTTAGTGTCACGTAAAC
GAATGAATGGGAAAGAATTCGAAAGACAATCACGAATCACGATCAGGAAG
GATGGCATCTTCGTTCTGTACACTTTCACTCAACGCTTCAACGAGAGTTC
ACCTCAAGAACAAGTAATCAATCAATTTTGCACACAATCCACTGTCACCA
TAAACGAAGCAATCACATTCTACGATTTACGACGCTTCGCCGTAAAAGAT
TCTTCACGTAAAGACGAATACGTTCTACGTAACGGCCCTAGTTTCCCGCA
AGGCGGTTTCACTGAGAAACGATGGCGCTTTGGAAAGACACATTTCACAC
AACCCTATGTTCCAGTCTCCTTTCGAAGGTTCCAACAAGGAAGTCCGATT
TCCAAAACAACAACAAGTTTAGAGTTGCGATATCATTATTTTTATACTGG
CAAACCTGATGTTAATCAATTCCGTATTCCGGAAATctgcaaaaagtatg
caaataaCGGTAGACCAGCTGATGGtggtaaataaATGGTAAGCCATTTT
GTGTGGACCGGTCTCATTTCACGTCGCAGCAGGTGCCGTCNTGATGGTAA
GCTGTTTTGTGTGGACCGACCCCATTTTACGTCGCAGCAGGTGCCACAAG
ACTTTACAGTCAGTTTCAATGGAGTTGTAAACACTTCATTCCCGCAAGGA
TTCAACCGGGAGATTCTCTCCGGTGCTATTTGGATGGACTCCACAGAAGG
TGATGAGAAACAAAGAGTTTTAGTGTCACGTAAACGAATGAATGGGAAAG
AATTCGAAAGACAATCACGAATCACGATCAGGAAGGATGGCATCTTCGTT
CTGTACACTTTCACTCAACGCTTCAACGAGAGTTCACCTCAAGAACAAGT
AATCAATCAATTTTGCACACAATCCACTGTCACCATAAACGAAGCAATCA
CATTCTACGATTTACGACGCTTCGCCGTAAAAGATTCTTCACGTAAAGAC
GAATACGTTCTACGTAACGGCCCTAGTTTCCCGCAAGGCGGTTTCACTGA
GAAACGATGGCGCTTTGGAAAGACACATTTCACACAACCCTATGTTCCAG
TCTCCTTTCGAAGGTTCCAACAAGGAAGTCCGATTTCCAAAACAACAACA
AGTTTAGAGTTGCGATATCATTATTTTTATACTGGCAAACCTGATGTTAA
TCAATTCCGTATTCCGGAAATctgcaaaaagtatgcaaataaCGGTAGAC
CAGCTGATGGtggtaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015032-exon-sc0000203-1491911889:139580..140441 | TCONS_00015032-exon-sc0000203-1491911889:139580..140441 | Clytia hemisphaerica | exon |
| TCONS_00015032-exon-sc0000203-1510915933:139580..140441 | TCONS_00015032-exon-sc0000203-1510915933:139580..140441 | Clytia hemisphaerica | exon |
| TCONS_00015032-exon-sc0000203-1575043694:139580..140441 | TCONS_00015032-exon-sc0000203-1575043694:139580..140441 | Clytia hemisphaerica | exon |
| TCONS_00015032-exon-sc0000203-1491911889:141752..142433 | TCONS_00015032-exon-sc0000203-1491911889:141752..142433 | Clytia hemisphaerica | exon |
| TCONS_00015032-exon-sc0000203-1510915933:141752..142433 | TCONS_00015032-exon-sc0000203-1510915933:141752..142433 | Clytia hemisphaerica | exon |
| TCONS_00015032-exon-sc0000203-1575043694:141752..142433 | TCONS_00015032-exon-sc0000203-1575043694:141752..142433 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000203 | supercontig | sc0000203:139580..142433 + |
Blast
The following BLAST results are available for this feature:
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