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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015023 ID=TCONS_00015023|Name=TCONS_00015023|organism=Clytia hemisphaerica|type=transcript|length=3149bpRun BLAST on NCBI transcript from alignment at sc0000203:61268..81951+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015023 ID=TCONS_00015023|Name=TCONS_00015023|organism=Clytia hemisphaerica|type=transcript|length=20684bp|location=Sequence derived from alignment at sc0000203:61268..81951+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00015023 vs. Swiss-Prot (Human)
Match: MDR1 (Multidrug resistance protein 1 OS=Homo sapiens GN=ABCB1 PE=1 SV=3) HSP 1 Score: 743.036 bits (1917), Expect = 0.000e+0 Identity = 406/926 (43.84%), Postives = 599/926 (64.69%), Query Frame = 2
Query: 407 SVTLRQLFQFSDKLDVLYMVFGSLGAIFHGLSLPGQLIIFGQLVNNFIDFTQQRELIRKNATAVAPEDV---IDIESEMLFYAQIYAYVAVASWIVGYMQCAFWSISAXXXXXXXXMLFFNSILRQDVGWFDVNEAGGLTTRMFEDLQQIQSGIGDKVGNTLQAVSTLXXXXXXXXXXXWKLALVMLAVCPLIVMAGALTGKVMASLTSKEXXXXXXXXXXXXXXISSIRTVVAFGGEKEELDSYNAKLVLAEEAGIKKAITGAFSMGVFFIVMAGAEALAFWYGSTLVADEDFPPGSLLTVFFSILIGSAQIGQAGPNMEALATAKGAAYYVYQVIKRKSPIDTMNEEGKKPDFYSADQIQFQNIHFHYPSRTDIPVLQGFDLTVNKGQTVALVGESGCGKSTTIKLLQRFYDVIGGSVIIGKDNIKDINVKWLRQHIGIVSQEPVLFDMTIADNIRMGKDNATQQEIEQAAINANAHDFITNLPKGYDTNVGEGGAQLSGGQKQRIAIARALIKDPQILLLDEATSALDTESESIVQTALDNASMGRTTIIIAHRLSTVKNADLIVAVQDGRVAEKGTHDELMARKGVYYQLVMLQTLAEQEEHE--LSETGSLI------TEEEREALLQVRMMRSLSQMSGEQGASIEDISFARALXXXXXXXXXXXXXXXXXXXXXXEALIEEAVDPAPISRVLSYNKPEWHLMGMGLIFSAMHGCIPIFFAFIIGQVLGALA-LPDKEQIKEESKKWSLVFLAMGAANCIGYGMGNYLFGKSGERLTRRLRSKAFECILKQDIAYFDDPYHGTGQLTARLATDASKVKGATSSRISVLVQVSFTALSALFVAFYYSWKLTLLVIAFVPFLVFGGVMRASRFKNFAAKEGKRLLEASAVSQQALMNIRTVASLGKEDYFYERFSCLLQEPY 3148
+V++ +F++S+ LD LYMV G+L AI HG LP +++FG++ + F + +L+ D +++E +M YA Y+ + + Y+Q +FW ++A RQI +IR FF++I+RQ++GWFDV++ G L TR+ +D+ +I GIGDK+G Q+++T GF V F GWKL LV+LA+ P++ ++ A+ K+++S T KE AYA+AGA+AE+ +++IRTV+AFGG+K+EL+ YN L A+ GIKKAIT S+G F+++ + ALAFWYG+TLV ++ G +LTVFFS+LIG+ +GQA P++EA A A+GAAY ++++I K ID+ ++ G KPD + ++F+N+HF YPSR ++ +L+G +L V GQTVALVG SGCGKSTT++L+QR YD G V + +I+ INV++LR+ IG+VSQEPVLF TIA+NIR G++N T EIE+A ANA+DFI LP +DT VGE GAQLSGGQKQRIAIARAL+++P+ILLLDEATSALDTESE++VQ ALD A GRTTI+IAHRLSTV+NAD+I DG + EKG HDELM KG+Y++LV +QT + E E E+ S I + + R +L++ R R +G+ +D + KEAL +E++ P R++ N EW +G+ + ++G + FA I +++G + D E ++ S +SL+FLA+G + I + + + FGK+GE LT+RLR F +L+QD+++FDDP + TG LT RLA DA++VKGA SR++V+ Q + + ++F Y W+LTLL++A VP + GV+ A K+ K L + ++ +A+ N RTV SL +E F ++ LQ PY
Sbjct: 33 TVSVFSMFRYSNWLDKLYMVVGTLAAIIHGAGLPLMMLVFGEMTDIFANAGNLEDLMSNITNRSDINDTGFFMNLEEDMTRYAYYYSGIGAGVLVAAYIQVSFWCLAAGRQIHKIRKQFFHAIMRQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQSMATFFTGFIVGFTRGWKLTLVILAISPVLGLSAAVWAKILSSFTDKELLAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNKNLEEAKRIGIKKAITANISIGAAFLLIYASYALAFWYGTTLVLSGEYSIGQVLTVFFSVLIGAFSVGQASPSIEAFANARGAAYEIFKIIDNKPSIDSYSKSGHKPDNIKGN-LEFRNVHFSYPSRKEVKILKGLNLKVQSGQTVALVGNSGCGKSTTVQLMQRLYDPTEGMVSVDGQDIRTINVRFLREIIGVVSQEPVLFATTIAENIRYGRENVTMDEIEKAVKEANAYDFIMKLPHKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQVALDKARKGRTTIVIAHRLSTVRNADVIAGFDDGVIVEKGNHDELMKEKGIYFKLVTMQTAGNEVELENAADESKSEIDALEMSSNDSRSSLIRKRSTR-----RSVRGSQAQDRKLS-----------------------TKEAL-DESIPPVSFWRIMKLNLTEWPYFVVGVFCAIINGGLQPAFAIIFSKIIGVFTRIDDPETKRQNSNLFSLLFLALGIISFITFFLQGFTFGKAGEILTKRLRYMVFRSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGAIGSRLAVITQNIANLGTGIIISFIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTQEQKFEHMYAQSLQVPY 928 HSP 2 Score: 414.461 bits (1064), Expect = 1.535e-124 Identity = 243/586 (41.47%), Postives = 357/586 (60.92%), Query Frame = 2
Query: 458 YMVFGSLGAIFHGLSLPGQLIIFGQLVNNFIDFTQQRELIRKNATAVAPEDVIDIESEMLFYAQIYAYVAVASWIVGYMQCAFWSISAXXXXXXXXMLFFNSILRQDVGWFD--VNEAGGLTTRMFEDLQQIQSGIGDKVGNTLQAVSTLXXXXXXXXXXXWKLALVMLAVCPLIVMAGALTGKVMASLTSKEXXXXXXXXXXXXXXISSIRTVVAFGGEKEELDSYNAKLVLAEEAGIKKA----ITGAFSMGVFFIVMAGAEALAFWYGSTLVADEDFPPGSLLTVFFSILIGSAQIGQAGPNMEALATAKGAAYYVYQVIKRKSPIDTMNEEGKKPDFYSADQIQFQNIHFHYPSRTDIPVLQGFDLTVNKGQTVALVGESGCGKSTTIKLLQRFYDVIGGSVIIGKDNIKDINVKWLRQHIGIVSQEPVLFDMTIADNIRMGKDN--ATQQEIEQAAINANAHDFITNLPKGYDTNVGEGGAQLSGGQKQRIAIARALIKDPQILLLDEATSALDTESESIVQTALDNASMGRTTIIIAHRLSTVKNADLIVAVQDGRVAEKGTHDELMARKGVYYQLVMLQ 2191
Y V G AI +G P IIF +++ F E R+N+ ++ ++ + + S+I ++Q + + +R+R + F S+LRQDV WFD N G LTTR+ D Q++ IG ++ Q ++ L G ++F++GW+L L++LA+ P+I +AG + K+++ K++ +G IA +AI + RTVV+ E++ Y L + ++KA IT +F+ + + AG F +G+ LVA + +L VF +++ G+ +GQ A AK +A ++ +I++ ID+ + EG P+ + + F + F+YP+R DIPVLQG L V KGQT+ALVG SGCGKST ++LL+RFYD + G V++ IK +NV+WLR H+GIVSQEP+LFD +IA+NI G ++ +Q+EI +AA AN H FI +LP Y T VG+ G QLSGGQKQRIAIARAL++ P ILLLDEATSALDTESE +VQ ALD A GRT I+IAHRLST++NADLIV Q+GRV E GTH +L+A+KG+Y+ +V +Q
Sbjct: 710 YFVVGVFCAIINGGLQPAFAIIFSKIIGVFTRIDDP-ETKRQNSN---------------LFSLLFLALGIISFITFFLQGFTFGKAGEILTKRLRYMVFRSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGAIGSRLAVITQNIANLGTGIIISFIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTQEQKFEHMYAQSLQVPYRNSLRKAHIFGITFSFTQAMMYFSYAGC----FRFGAYLVAHKLMSFEDVLLVFSAVVFGAMAVGQVSSFAPDYAKAKISAAHIIMIIEKTPLIDSYSTEGLMPNTLEGN-VTFGEVVFNYPTRPDIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPLAGKVLLDGKEIKRLNVQWLRAHLGIVSQEPILFDCSIAENIAYGDNSRVVSQEEIVRAAKEANIHAFIESLPNKYSTKVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVFQNGRVKEHGTHQQLLAQKGIYFSMVSVQ 1274 The following BLAST results are available for this feature:
BLAST of TCONS_00015023 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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