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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015019 ID=TCONS_00015019|Name=TCONS_00015019|organism=Clytia hemisphaerica|type=transcript|length=945bp
CATTCGTTATTCTCATTTTTGTAAAGGCTAACATTTTAAAGTTACCAGAA
TGCGGTAAATATGACGCTGAATTTTCAAAGATAACATATCATCAACGGTT
ATTGGGTGCTATTCTTAAAACTTTAGGCTTTATCTCACTGCGAAAATGTT
TAACGAAATGTATGTTACATCCAACCTGTCAATCAGTGAATTTCATGAGA
CAAAATGAGACTTGTGAATTATTAGGTAATTCTGCACGAAGAAATTCGTC
AGGAAATTCTCTATTTTCACCAGCAAATGGATGGAACCATTTTGAAACGG
ATTATGACAAGAAAACGTTGGGTTCATGGTGCAGTAATGGAAATAACAAC
CCTTGTAATGTGATCACAGAACGTTGTGAAGACAGATGCGTTGGCAATCA
TCAATGTGTCGCAGTCGCACAATCTCTTCATGAACACATGAATCACTCAT
CAATTTCAACACTATACGGTACATATTATGCATCTCTTGCTTTTGATGGC
AACGAAGATACATGGGCATGTACAAATAACATAAATACAGGTGGTGAACC
AAATTGGATTAAAGCTGTCTTTAAAAGCCGTGTCTTCATCAATTACGTCA
TCTTTGTGAACCGACAAGACACCGTTAATACGGTACACGAAAATCGTTGC
GATAATGTTGATCTCAAGACCATTTTGCATACAAACAATAATCAAAATCT
TATAACAACTTTTGGAAACACGGGAGATTTAGGTAATCGCACGACAATCT
CTTGTATGCAATTTGCAGATGAAATTATAGCAACTCAAAATCCTCCACAC
CAGACAATGAATCTTGCTGAAATATGGATTCATGGCAGAATTATATAACA
TTCtcattttcgaccgtagccgccaattgacgcgcgcaggcatttttttg
tccgctttatcccactagaaccgtcccagtccttttttcggaTCT Run BLAST on NCBI transcript from alignment at sc0000203:32173..35260+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015019 ID=TCONS_00015019|Name=TCONS_00015019|organism=Clytia hemisphaerica|type=transcript|length=3088bp|location=Sequence derived from alignment at sc0000203:32173..35260+ (Clytia hemisphaerica)
CATTCGTTATTCTCATTTTTGTAAAGGCTAACATTTTAAAGTTACCAGAA
TGCGGTAAATATGACGCTGAATTTTCAAAGATAACATATCATCAACGGTT
ATTGGGTGCTATTCTTAAAACTTTAGGCTTTATCTCACTGCGAAAATGTT
TAACGAAATGTATGTTACATCCAACCTGTCAATCAGTGAATTTCATGAGA
CAAAATGAGACTTGTGAATTATTAGGTAATTCTGCACGAAGAAATTCGTC
AGGAAATTCTCTATTTTCACCAGCAAATGGATGGAACCATTTTGAAACGG
ATTATGACAAGAAAACGGTAagcttttgttgttctttttttaataaaaag
taaCGGTAGGAACATCCCCTAAATCTTGAATGAACGCCATTAAACGAAAA
AAATTGGGCCGGTACTAATCCTTTCCGATAAAGTGTGTAACACCCAAATG
GACAATAGGTGGGACACACAATCGGGGACAAAAGGTCTGTAGACATTTCT
AAATTCAGCAAAAACTTCTTCTTGAAAACGCTCAACGTGAAAACTCATTG
AACTTTCAATCTCAGACCAATAAAGGCCTGAAGACTTTGCAAGAATTCAT
TTCCTTCAATGTTGAGTGGATTCAGCTTCTGGACTTCATCCAATATATCT
TATTAAtccaataaaattaaaaacaacatAGGCTCTGGTAAAATGGGTTT
TCAGAGCTTATTTGGAAACTGTCCATACAGGCCGTTCTCACAGACCCATA
GATTataaagaagttaccaattaactttgttgcgagcgaagggagtgaga
aaaaaattgcaagtaatttaaaattatctcagtaaaattggtcctgggcg
caatttcAGGAgtataaagtatgatttttaagattggggcgtttaaaaaa
tcttttttggcgccccctgCTCTTCGgcaaaaattggccaaaattttttc
tccaatttctgTTCCAACTGAAAATAACCAAATAAAAGAATCaacactgc
aaaatatttactatttttcccatccacactgaattttctgacttgaaaac
aaaagaaataccccagccataaaaaagatGGAAATAttaatccccattga
gttttagCCAGTGTCTGAAAAATTCAactgggtttgtgagaaggccTGTT
CATTAGATTTTTAGAACCTTTTGTCCAAGATTGCATTTACAGAGATTTGG
CTAAAATATGCGAATAGAAAggacttttgaaaatttgtacatTTAAGAAA
CGTATCCCTAATGaatacactttttcgaccgtagccgctgATTGCCGCTC
GGGCATTTTCTTgcccgctttatcccactaaactcgatccaatccttttt
tgacacatttttctattgtatgTAGCAGTGAAAAAAGGGCTTGGGCGGTT
TTAGTGGGAttaagcggacaaaaaaatgcccacgcATCAATTGGTggtta
cggtcgaaaaggtgtatatttACTTTCTCGCACTGATaagttttactttc
tttttccttttctagTTGGGTTCATGGTGCAGTAATGGAAATAACAACCC
TTGTAATGTGATCACAGAACGTTGTGAAGACAGATGCGTTGGCAATCATC
AATGTGTCGCAGTCGGTAAGCTTTCTCAGAGAAAAATTCGGAGCAGCTAC
AGggccggcggaacaaccgtaaaagtggggagcTGAAGGCTCAGAATGAG
ATAACTTTTCTAGGATTTTGAGAAATAAATCTCATTTGTTCAAAGTTGGG
GAGCCTGAAGTCTCTCCGCTTCCACCGGGCCTGATTTGACACTCGAATTT
CTATACCCAACTTAAACAAGAGGTCGTACAACTATTCTATAAAATAGTTA
AGGTTGAAgttttctctaattcgactttcaaggggaattgtattttcatt
gaataagggGAGCATTCGAATAGTGGAGAGAATAATCGAATTAGCGTTAA
CTGCCGGGGGTACTAGCTTTGCGAGATGACAGGTATATCAGAGCCAAAGT
TCGAAATTCAACCCTTAgagattttttgacattttgccACCCATAGAGAG
ACTATTTCCACAAAACttcagccaaaatttccaaattttagtccaaattt
caagaattaaTGAGCCTTAAAAGAGTCCAATTTCGAACTTcataattttg
gaacccttactCAAGTGTTTTTTAACGatatttgtacccctttgatgGGC
TTTCGAGTTTGAAAATAGGACCCGGTttgcacatacccggcacccatttt
gcctactCTCGGTCATCAATTGTATGCGCACAGGCAAGTTCTCTAGGATA
TTAGGATCCATTCCGAATGTTTTGAAACGAGCACTTCTCCCTCGTGTAAT
CTAATGATGACCTACTGTAAAATTTTGCTTaatcaaaattctttcaatCA
AACCTTTCTACAATTCGAACTTGCTTCCCCGGCACGGAGAAACCTTCCTA
AagtactttctataattcgaatctctctgcaATTCTAACTGATAAGATTC
CCCGtttaagttcgaattagcgagggTATAAACTGTATAATTTGAACTCA
ACTCTTTCAGCACAATCTCTTCATGAACACATGAATCACTCATCAATTTC
AACACTATACGGTACATATTATGCATCTCTTGCTTTTGATGGCAACGAAG
ATACATGGGCATGTACAAATAACATAAATACAGGTGGTGAACCAAATTGG
ATTAAAGCTGTCTTTAAAAGCCGTGTCTTCATCAATTACGTCATCTTTGT
GAACCGACAAGACACCGTTAATACGGTACACGAAAATCGTTGCGATAATG
TTGATCTCAAGACCATTTTGCATACAAACAATAATCAAAATCTTATAACA
ACTTTTGGAAACACGGGAGATTTAGGTAATCGCACGACAATCTCTTGTAT
GCAATTTGCAGATGAAATTATAGCAACTCAAAATCCTCCACACCAGACAA
TGAATCTTGCTGAAATATGGATTCATGGCAGAATTATATAACATTCtcat
tttcgaccgtagccgccaattgacgcgcgcaggcatttttttgtccgctt
tatcccactagaaccgtcccagtccttttttcggaTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015019-exon-sc0000203-1491911889:32173..32489 | TCONS_00015019-exon-sc0000203-1491911889:32173..32489 | Clytia hemisphaerica | exon |
| TCONS_00015019-exon-sc0000203-1510915933:32173..32489 | TCONS_00015019-exon-sc0000203-1510915933:32173..32489 | Clytia hemisphaerica | exon |
| TCONS_00015019-exon-sc0000203-1575043694:32173..32489 | TCONS_00015019-exon-sc0000203-1575043694:32173..32489 | Clytia hemisphaerica | exon |
| TCONS_00015019-exon-sc0000203-1491911889:33688..33787 | TCONS_00015019-exon-sc0000203-1491911889:33688..33787 | Clytia hemisphaerica | exon |
| TCONS_00015019-exon-sc0000203-1510915933:33688..33787 | TCONS_00015019-exon-sc0000203-1510915933:33688..33787 | Clytia hemisphaerica | exon |
| TCONS_00015019-exon-sc0000203-1575043694:33688..33787 | TCONS_00015019-exon-sc0000203-1575043694:33688..33787 | Clytia hemisphaerica | exon |
| TCONS_00015019-exon-sc0000203-1491911889:34733..35260 | TCONS_00015019-exon-sc0000203-1491911889:34733..35260 | Clytia hemisphaerica | exon |
| TCONS_00015019-exon-sc0000203-1510915933:34733..35260 | TCONS_00015019-exon-sc0000203-1510915933:34733..35260 | Clytia hemisphaerica | exon |
| TCONS_00015019-exon-sc0000203-1575043694:34733..35260 | TCONS_00015019-exon-sc0000203-1575043694:34733..35260 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000203 | supercontig | sc0000203:32173..35260 + |
Blast
The following BLAST results are available for this feature:
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