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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015016 ID=TCONS_00015016|Name=TCONS_00015016|organism=Clytia hemisphaerica|type=transcript|length=1358bp
CTTGTCGAAAAATGCACTTTCTTGTCACCTTTCAAACTTGATTAGAATGA
TATGAAGCTTGTAGCATTTTTCTCATTCGTTATTCTCATTTTTGTAAAGG
CTAACATTCTAAAGTTACCAGAATGCGGTAAATATGACGCTGAATTTTCA
AAGATAACGTATCATCAACGGTTATTGGGTGATATTCTCAAAACTTTAGA
TTTTATCTCACTGCGAAAATGTTTAACGAAATGTATGTTACATCCAACCT
GTCAATCAGTGAATTTCATGAGACAAAATGAGACTTGTGAATTATTAGGT
AATTCTGCACGAAGAAATTCGTCAGGAAATTCTCTATTTTCACCAGCAAA
TGGATGGAACCATTTTGAAACGGATTATGACAAGAAAACGTTGGGTTCAT
GGTGCAGTAATGGAAATAACAACCCTTGTAATGCAATCACAGAACGTTGT
GAAGACAGATGCGTTGGCAATTATCAATGTGTCGCAGTCGCACAATCTCT
TCATGAACACGTGAATCACTCATCAATTTCAACACTATACGGTACATATT
ATGCATCTCTTGCATTTGATGGCAACGAAGATACATGGGCATGTACACAT
AACTTAGGTACTGAACCAAATTGGATTAAAGCTGTCTTTAAAAGCCGTGT
CTTCGTCAATTACATCATCTTTGTGAACCGACAAGACACCGTTAATACAG
TACACGAAAACCGTTGCGATAATGTTGATCTCAAGACCATTTTGTATACA
AACAATAATCAAAATCTTATAACAACTTTTGGAAACACGGGAGATTTAGG
TATTCGCACGACAATCTCTTGTATGAAATTTGCAGATGAAATTATAGCAA
CTCAAAATCCTCCACACCAGACAATGAATCTTGCTGAAATATGGATTCAT
GGCAGAATTATATAACATTCtcattttcgaccgtagccgccaattgacgc
gcgcaggcatttttttgtccgctttatcccactagaaccgtcccagtcct
tttttcggaTCTATAGACAGTAGAagaatgtgtcaaaaaaggattggatc
gagtttagtgggataaagtgaACAAAGAAATAAACGCACGGCAATTTATG
GCTACGGAAATAAACTCCATAATAACATTTGCTGCGACAAATTCACGGCA
ACTTCTTTTCGTGAAAACCTGGATATTTAAGACTTACGACAagatttatt
attattaaccCTATTCGTGCTAAGCTaaggaggggggggggcttttcctg
tttGGAGGTTAAACTGATGCTAaaagctcctgaaataatagagcttttga
cataaaattttctgcaaattcctaacttttatttagcttcaaaataagtT
AATTTTTG Run BLAST on NCBI transcript from alignment at sc0000203:10596..13502+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015016 ID=TCONS_00015016|Name=TCONS_00015016|organism=Clytia hemisphaerica|type=transcript|length=2907bp|location=Sequence derived from alignment at sc0000203:10596..13502+ (Clytia hemisphaerica)
CTTGTCGAAAAATGCACTTTCTTGTCACCTTTCAAACTTGATTAGAATGA
TATGAAGCTTGTAGCATTTTTCTCATTCGTTATTCTCATTTTTGTAAAGG
CTAACATTCTAAAGTTACCAGAATGCGGTAAATATGACGCTGAATTTTCA
AAGATAACGTATCATCAACGGTTATTGGGTGATATTCTCAAAACTTTAGA
TTTTATCTCACTGCGAAAATGTTTAACGAAATGTATGTTACATCCAACCT
GTCAATCAGTGAATTTCATGAGACAAAATGAGACTTGTGAATTATTAGGT
AATTCTGCACGAAGAAATTCGTCAGGAAATTCTCTATTTTCACCAGCAAA
TGGATGGAACCATTTTGAAACGGATTATGACAAGAAAACGGTGagctttt
gttgttctttttttaataaCAAGTTACGGTAAGAAAATCCCCTAAATCTT
GAATGAACGCCATTAAACGAAACAAATTGGGCCGGTACTAATCCTTTCCG
ATAAAGTGTGTACCACGCCCAACAAATGGACGATAGGTGGGGCAAACAAT
CGGGGACAAAAAAGGTCTGTAATCTCCCCCAAAATGTCTTCTTGAAAATC
CGTAAGGTGAAAACTCATTGAACTTTCAATCTCAAACCAATAAAGGCCTG
AagacttttcaaaagtttatttCCTCCCTTCAATGGGTTCATGAGCTTAT
TTGGAAGCTGTCCATACACATcgttctcacagacccactgggatcccttt
tccactgggaccccttttccactgggaccccttttccactggaaaaattg
gccaaaatttatTCTCCAATTTTCGTTCCAACTGAAAAAACCCAAATAAA
CGAATCAAAACTGCAAAATATTAACTTTTTTTCCCATccacactgaattt
tctgacttgaaaacaaaagaatcgaaATACCCAGCCATTAAAGAGAtaaa
tccccattgagttttcacccgttatttttatccccagtgGGTGAAAAATT
CTactgggtttgtgagaaggtaGCGTGTTCAAagatttttggaacttttt
gtCCAGGATTGCATTAAAAAAGATTTGCCTAAATTTGCGAATAGAAAGGT
CTGGTGAAAAGTTGAGTATTTAAGAAACGTAGCCCTAATGAATATTCACT
TGCTCGCATTGATaagttttactttctttttccttttctagTTGGGTTCA
TGGTGCAGTAATGGAAATAACAACCCTTGTAATGCAATCACAGAACGTTG
TGAAGACAGATGCGTTGGCAATTATCAATGTGTCGCAGTCGGTAAGATTT
CTCAGAGAAAAATTCGGAGCAGCTACAGGGCCGGCGGAGccaccgtaaaa
gtggggaggctgaaggctcaaaatgagataagaCTCTCtaggatttttag
aaaaaactcATTTGTTTAAAGTTCTGAGGCTAAATtgatggagcgtatcg
aatagtggaAGGTCAAAACAGAGTTAActcccgggggagggggtattaGG
TTTGCGAGATGATAGGACCATATCAGAACTAAAGttcgaaaaccgaccct
tagagagactgaatttcgaaaattttggtatttttcagACGTTTTTGCCA
CCGTTAGAGAGAGTTTTGGGGGGCTATTTccacaaaatttcagccaagat
ttttagtccaaattttaAGAATTACCCTTAAGAGAGTCCAATttggaatt
ttggaattttggaacccttactCAAGTGTTTTCAACGATATTTGTACCTC
TTTGACGGATTTTCGAGTGTGAAAAAGGGATCCGACTTGCACACATCATC
TAAGCACCTCTCCCTCATGTAATCTAATAATGACCTACTGTAAACTCTTG
CTTAATCGAAATTCCTTAAATCGAATCTTTCTACAATTCGAACTTACTTC
CAGTCCCCGACGCGGAAAAACCGCTTTCCtaatatactttctataatccg
aatctctctgtaattccaACTGATAAGATTCCCTGTTTAAGTTCGAACTA
GCGAGGGTAAACTGTATAATTCGAACTCAACTCTTTCAGCACAATCTCTT
CATGAACACGTGAATCACTCATCAATTTCAACACTATACGGTACATATTA
TGCATCTCTTGCATTTGATGGCAACGAAGATACATGGGCATGTACACATA
ACTTAGGTACTGAACCAAATTGGATTAAAGCTGTCTTTAAAAGCCGTGTC
TTCGTCAATTACATCATCTTTGTGAACCGACAAGACACCGTTAATACAGT
ACACGAAAACCGTTGCGATAATGTTGATCTCAAGACCATTTTGTATACAA
ACAATAATCAAAATCTTATAACAACTTTTGGAAACACGGGAGATTTAGGT
ATTCGCACGACAATCTCTTGTATGAAATTTGCAGATGAAATTATAGCAAC
TCAAAATCCTCCACACCAGACAATGAATCTTGCTGAAATATGGATTCATG
GCAGAATTATATAACATTCtcattttcgaccgtagccgccaattgacgcg
cgcaggcatttttttgtccgctttatcccactagaaccgtcccagtcctt
ttttcggaTCTATAGACAGTAGAagaatgtgtcaaaaaaggattggatcg
agtttagtgggataaagtgaACAAAGAAATAAACGCACGGCAATTTATGG
CTACGGAAATAAACTCCATAATAACATTTGCTGCGACAAATTCACGGCAA
CTTCTTTTCGTGAAAACCTGGATATTTAAGACTTACGACAagatttatta
ttattaaccCTATTCGTGCTAAGCTaaggaggggggggggcttttcctgt
ttGGAGGTTAAACTGATGCTAaaagctcctgaaataatagagcttttgac
ataaaattttctgcaaattcctaacttttatttagcttcaaaataagtTA
ATTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015016-exon-sc0000203-1491911889:10596..10985 | TCONS_00015016-exon-sc0000203-1491911889:10596..10985 | Clytia hemisphaerica | exon |
| TCONS_00015016-exon-sc0000203-1510915933:10596..10985 | TCONS_00015016-exon-sc0000203-1510915933:10596..10985 | Clytia hemisphaerica | exon |
| TCONS_00015016-exon-sc0000203-1575043694:10596..10985 | TCONS_00015016-exon-sc0000203-1575043694:10596..10985 | Clytia hemisphaerica | exon |
| TCONS_00015016-exon-sc0000203-1491911889:11787..11886 | TCONS_00015016-exon-sc0000203-1491911889:11787..11886 | Clytia hemisphaerica | exon |
| TCONS_00015016-exon-sc0000203-1510915933:11787..11886 | TCONS_00015016-exon-sc0000203-1510915933:11787..11886 | Clytia hemisphaerica | exon |
| TCONS_00015016-exon-sc0000203-1575043694:11787..11886 | TCONS_00015016-exon-sc0000203-1575043694:11787..11886 | Clytia hemisphaerica | exon |
| TCONS_00015016-exon-sc0000203-1491911889:12635..13502 | TCONS_00015016-exon-sc0000203-1491911889:12635..13502 | Clytia hemisphaerica | exon |
| TCONS_00015016-exon-sc0000203-1510915933:12635..13502 | TCONS_00015016-exon-sc0000203-1510915933:12635..13502 | Clytia hemisphaerica | exon |
| TCONS_00015016-exon-sc0000203-1575043694:12635..13502 | TCONS_00015016-exon-sc0000203-1575043694:12635..13502 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000203 | supercontig | sc0000203:10596..13502 + |
Blast
The following BLAST results are available for this feature:
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