|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014994 ID=TCONS_00014994|Name=TCONS_00014994|organism=Clytia hemisphaerica|type=transcript|length=999bp
NNCTTTCAAACCTTTGTCCACTTTGATGCCTCATCTTTCTCATTTCTTTC
TCATCCAACTCCCTTTCAATCTGCTCAGCAATTTTCCTCTTTATTGTTTT
CTTCCATAATTCTTTCTTGTATTCCTTAGCAGTGTTCAAGTCTACCCCAA
TGTCTCTAGCAATTCTTCTTGTCTCTGATGCCCAATTAATGGTCTTTGCT
GTTTCACTGCATTCCTGGTCCTCTATCACCACTCTTCCTAATCTGCCTTT
GGCTGACGTTATAAGGTTTTGATAGAGCATCATTCTCTGATAGACCACCT
TCTTTTCAATCGGCCATACCCCAGTCTCTTTCAGGATGCCAAAGTAAGGT
GTTGATGATGGCATTCTTAGTATGGATTTGAGTATTCTCGCTTGGATTCT
TTCTAATTCTTCAATCTCTTTTTTGTCAATCCTTGTCCAGCATTCCAGGT
TGTATATCAGAGTTGGGACGACTGTTCTCTCATAAACTAGCAGTGCTGCA
TCTGTGGACATTGATCCCAACCATTCTTCCTTCACTGTTCCTTTCAGCTC
ATTTAACATAGCCCAACTCCGTTTTTCAATTTCCTTTAACTGCTCAGAAA
GTTTGCCATCTTCTGTGATCCAGTTGCCTAGGATTTTGTAGCTTGCAACT
CtttcaatttttcctcttttgacATTCATATACAGCTCTTGAACCTCCTC
TTTCCTCTTTCCGGCTTTTGTGTTTTCACCTTTTAGGCTAAAAAGGGGtg
gtcaggccaaaattttcccctcaaattttgaaaaccaaactaattttatt
tgaaagtccttacctttgtgagaaaaatgaggggtcatttgttaaaattg
gttaattagttccaaagttattccattttcaaaccacaaaaaaaccacct
tttcaaagaatcgcctccttgccagcaagaaataaatttcggaagcacca
aaatcgcgccaaaaatggcggatgaaatctagtcttccgtgtggcgggg Run BLAST on NCBI protein sequence of TCONS_00014994-protein >TCONS_00014994-protein ID=TCONS_00014994-protein|Name=TCONS_00014994-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
MNVKRGKIERVASYKILGNWITEDGKLSEQLKEIEKRSWAMLNELKGTVK
EEWLGSMSTDAALLVYERTVVPTLIYNLECWTRIDKKEIEELERIQARIL
KSILRMPSSTPYFGILKETGVWPIEKKVVYQRMMLYQNLITSAKGRLGRV
VIEDQECSETAKTINWASETRRIARDIGVDLNTAKEYKKELWKKTIKRKI
AEQIERELDEKEMRKMRHQSGQRFEX Run BLAST on NCBI transcript from alignment at sc0000201:230525..231523 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014994 ID=TCONS_00014994|Name=TCONS_00014994|organism=Clytia hemisphaerica|type=transcript|length=999bp|location=Sequence derived from alignment at sc0000201:230525..231523 (Clytia hemisphaerica)
ccccgccacacggaagactagatttcatccgccatttttggcgcgatttt
ggtgcttccgaaatttatttcttgctggcaaggaggcgattctttgaaaa
ggtggtttttttgtggtttgaaaatggaataactttggaactaattaacc
aattttaacaaatgacccctcatttttctcacaaaggtaaggactttcaa
ataaaattagtttggttttcaaaatttgaggggaaaattttggcctgacc
aCCCCTTTTTAGCCTAAAAGGTGAAAACACAAAAGCCGGAAAGAGGAAAG
AGGAGGTTCAAGAGCTGTATATGAATgtcaaaagaggaaaaattgaaaGA
GTTGCAAGCTACAAAATCCTAGGCAACTGGATCACAGAAGATGGCAAACT
TTCTGAGCAGTTAAAGGAAATTGAAAAACGGAGTTGGGCTATGTTAAATG
AGCTGAAAGGAACAGTGAAGGAAGAATGGTTGGGATCAATGTCCACAGAT
GCAGCACTGCTAGTTTATGAGAGAACAGTCGTCCCAACTCTGATATACAA
CCTGGAATGCTGGACAAGGATTGACAAAAAAGAGATTGAAGAATTAGAAA
GAATCCAAGCGAGAATACTCAAATCCATACTAAGAATGCCATCATCAACA
CCTTACTTTGGCATCCTGAAAGAGACTGGGGTATGGCCGATTGAAAAGAA
GGTGGTCTATCAGAGAATGATGCTCTATCAAAACCTTATAACGTCAGCCA
AAGGCAGATTAGGAAGAGTGGTGATAGAGGACCAGGAATGCAGTGAAACA
GCAAAGACCATTAATTGGGCATCAGAGACAAGAAGAATTGCTAGAGACAT
TGGGGTAGACTTGAACACTGCTAAGGAATACAAGAAAGAATTATGGAAGA
AAACAATAAAGAGGAAAATTGCTGAGCAGATTGAAAGGGAGTTGGATGAG
AAAGAAATGAGAAAGATGAGGCATCAAAGTGGACAAAGGTTTGAAAGNN Coding sequence (CDS) from alignment at sc0000201:230525..231523 >TCONS_00014994 ID=TCONS_00014994|Name=TCONS_00014994|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at sc0000201:230525..231523 (Clytia hemisphaerica)
ATGAATgtcaaaagaggaaaaattgaaaGAGTTGCAAGCTACAAAATCCT
AGGCAACTGGATCACAGAAGATGGCAAACTTTCTGAGCAGTTAAAGGAAA
TTGAAAAACGGAGTTGGGCTATGTTAAATGAGCTGAAAGGAACAGTGAAG
GAAGAATGGTTGGGATCAATGTCCACAGATGCAGCACTGCTAGTTTATGA
GAGAACAGTCGTCCCAACTCTGATATACAACCTGGAATGCTGGACAAGGA
TTGACAAAAAAGAGATTGAAGAATTAGAAAGAATCCAAGCGAGAATACTC
AAATCCATACTAAGAATGCCATCATCAACACCTTACTTTGGCATCCTGAA
AGAGACTGGGGTATGGCCGATTGAAAAGAAGGTGGTCTATCAGAGAATGA
TGCTCTATCAAAACCTTATAACGTCAGCCAAAGGCAGATTAGGAAGAGTG
GTGATAGAGGACCAGGAATGCAGTGAAACAGCAAAGACCATTAATTGGGC
ATCAGAGACAAGAAGAATTGCTAGAGACATTGGGGTAGACTTGAACACTG
CTAAGGAATACAAGAAAGAATTATGGAAGAAAACAATAAAGAGGAAAATT
GCTGAGCAGATTGAAAGGGAGTTGGATGAGAAAGAAATGAGAAAGATGAG
GCATCAAAGTGGACAAAGGTTTGAAAGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014994-exon-sc0000201-1491911889:230525..231523 | TCONS_00014994-exon-sc0000201-1491911889:230525..231523 | Clytia hemisphaerica | exon |
| TCONS_00014994-exon-sc0000201-1510915933:230525..231523 | TCONS_00014994-exon-sc0000201-1510915933:230525..231523 | Clytia hemisphaerica | exon |
| TCONS_00014994-exon-sc0000201-1575043694:230525..231523 | TCONS_00014994-exon-sc0000201-1575043694:230525..231523 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000201 | supercontig | sc0000201:230525..231523 . |
Blast
The following BLAST results are available for this feature:
|
