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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014991 ID=TCONS_00014991|Name=TCONS_00014991|organism=Clytia hemisphaerica|type=transcript|length=1760bp
ATCAGACTCGATCGGTTATCACCCTGAGGAGTTCCATGATGAAAATTGTG
GCGAACGACCAAGGTAACAATTTCCTTGGCATCGTTGAAACGAGCTGTCG
ACCAAAATTTGGGAAGGTGAACAAGCAGTTCATCACGTTGACGAGTCATT
TAGTAAAGGATGAGGACTGGATGGCAATACAGAGGGATTACCTTACATCA
ATAACAAAATGTAGACACGACGCATCAGAAGCATTCAGATGTTCCATCTT
GAACCGTAAAGAatcaactttcaaaatattactcAGGAAATATGGATTCA
AGTATGTCATCCCCTCAGCCTATACAAACCTTATTCAAAATGTTGAAGGT
AGTTTCATACAGTCGCTGCGGAAAGACAAAAGGGATATCAAAGATCGCAT
ACAAATCCCATTGGCTTCCTCCCGACTTGTGTTTGGTGCAGTGATTCCAA
AATACCTAAACCAGTATCTTGAAGAGGGGCAATGCATCATGCTGACTGAG
AAAGGTGCTCATATCGGCAATGTCATCGTGAGCAGAAGTCCTTCGTATTC
ACCAGGAGATATTCAAATACTGGAAGCAGTCAGACCACCAAAAGGATTTC
CCAAAGAGATGAAGAATGTGATTTTGTTCTCAACACAAGGTGTTCGACCA
GTTGCCGATAAGATGAGTGGAGGTGATTTGGACGGTGATATGTATCTTGT
GGTTTGGCATGAAAATCTCCTCCAGTATGTTGATGTCATCAAGAAAGAAA
AGCCAATGATATTTGACGATGCTTCTTCGACTGTTGTCAGATCAGACAAA
CATTGGATAACATATGTAGCACATTGGGATAATACAATTCTTGGGCAAAT
TGACAGCTGCTTTTATGAGGTTGCCGAAGAGTTTGGCGTCAACTCATCCG
AATGCCAAGAGCTTTGCAAAATCTTTTCCAGAGCTGTAGATAATGTCCAA
GATGATTTGAAAAGacttaaagaaatttcaaacagATGTTTCAAgcgaaa
aagtgaaagaaatcgTTCTCAATTAAATCTTCCAATTTGGGAGAAGATGA
GTCATCAAGCATTAACCgttttggaaaatttaagaGAAAAACGAAACGGG
TATCCTATACTTGACGACTGGGCGAAATTCAGTGACAGCCTGGTATATAC
AAGCAGGGAAGATCTTGACAAGTTGTTTAGTTCACCAAGGATTTTGGCGG
TTGGAGATGACATAGACGTGTACCAAAAAAATTGGGTGAAGATCTTACAA
CAACGTCCTAAGGAGGTTGTTATGGAAACAATCATTAACTGTACTTTTGA
CTGTAAAGAGAAAACATGTCAAAAAGAGCACAGCAAAGATCCCACGTATT
ATAAAGTTCAATGGTTGAAAAGACTTCATGGAGAGCTTGGAGAGTTTGTT
CAAACGTTCAGAGACGAACAAAAAGCGATTGAAGAGCAGCTGGAACAACA
TGAAAGATTGAGGGAGGAGATTtccaaagaagaagaaaagaatgaaGCTG
ACTTCCAAGCGAAAGTGGAGAAGCACATCAATGTACTCGACAATTTGATG
CAACATGATCAACTGATCAAGGGAAGTGTTGCGCAACTCAAACACCAAAT
CAAGGAGCTGGAGAATGGTTTTTCCGAATATGAAAGTTGGTTTTGTAAAA
ACTCAAGGAGAGATGAATTGAAGAATGAAATTCTCATAATTATCGACCAA
TTATTCTTACTGTACAAGAAGATCACCATGGAGCTGAACGAGGTTGCCAT
GCTATTCAAC Run BLAST on NCBI protein sequence of TCONS_00014991-protein >TCONS_00014991-protein ID=TCONS_00014991-protein|Name=TCONS_00014991-protein|organism=Clytia hemisphaerica|type=polypeptide|length=586bp
QTRSVITLRSSMMKIVANDQGNNFLGIVETSCRPKFGKVNKQFITLTSHL
VKDEDWMAIQRDYLTSITKCRHDASEAFRCSILNRKESTFKILLRKYGFK
YVIPSAYTNLIQNVEGSFIQSLRKDKRDIKDRIQIPLASSRLVFGAVIPK
YLNQYLEEGQCIMLTEKGAHIGNVIVSRSPSYSPGDIQILEAVRPPKGFP
KEMKNVILFSTQGVRPVADKMSGGDLDGDMYLVVWHENLLQYVDVIKKEK
PMIFDDASSTVVRSDKHWITYVAHWDNTILGQIDSCFYEVAEEFGVNSSE
CQELCKIFSRAVDNVQDDLKRLKEISNRCFKRKSERNRSQLNLPIWEKMS
HQALTVLENLREKRNGYPILDDWAKFSDSLVYTSREDLDKLFSSPRILAV
GDDIDVYQKNWVKILQQRPKEVVMETIINCTFDCKEKTCQKEHSKDPTYY
KVQWLKRLHGELGEFVQTFRDEQKAIEEQLEQHERLREEISKEEEKNEAD
FQAKVEKHINVLDNLMQHDQLIKGSVAQLKHQIKELENGFSEYESWFCKN
SRRDELKNEILIIIDQLFLLYKKITMELNEVAMLFN Run BLAST on NCBI transcript from alignment at sc0000201:201481..203240 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014991 ID=TCONS_00014991|Name=TCONS_00014991|organism=Clytia hemisphaerica|type=transcript|length=1760bp|location=Sequence derived from alignment at sc0000201:201481..203240 (Clytia hemisphaerica)
GTTGAATAGCATGGCAACCTCGTTCAGCTCCATGGTGATCTTCTTGTACA
GTAAGAATAATTGGTCGATAATTATGAGAATTTCATTCTTCAATTCATCT
CTCCTTGAGTTTTTACAAAACCAACTTTCATATTCGGAAAAACCATTCTC
CAGCTCCTTGATTTGGTGTTTGAGTTGCGCAACACTTCCCTTGATCAGTT
GATCATGTTGCATCAAATTGTCGAGTACATTGATGTGCTTCTCCACTTTC
GCTTGGAAGTCAGCttcattcttttcttcttctttggaAATCTCCTCCCT
CAATCTTTCATGTTGTTCCAGCTGCTCTTCAATCGCTTTTTGTTCGTCTC
TGAACGTTTGAACAAACTCTCCAAGCTCTCCATGAAGTCTTTTCAACCAT
TGAACTTTATAATACGTGGGATCTTTGCTGTGCTCTTTTTGACATGTTTT
CTCTTTACAGTCAAAAGTACAGTTAATGATTGTTTCCATAACAACCTCCT
TAGGACGTTGTTGTAAGATCTTCACCCAATTTTTTTGGTACACGTCTATG
TCATCTCCAACCGCCAAAATCCTTGGTGAACTAAACAACTTGTCAAGATC
TTCCCTGCTTGTATATACCAGGCTGTCACTGAATTTCGCCCAGTCGTCAA
GTATAGGATACCCGTTTCGTTTTTCtcttaaattttccaaaacGGTTAAT
GCTTGATGACTCATCTTCTCCCAAATTGGAAGATTTAATTGAGAAcgatt
tctttcactttttcgcTTGAAACATctgtttgaaatttctttaagtCTTT
TCAAATCATCTTGGACATTATCTACAGCTCTGGAAAAGATTTTGCAAAGC
TCTTGGCATTCGGATGAGTTGACGCCAAACTCTTCGGCAACCTCATAAAA
GCAGCTGTCAATTTGCCCAAGAATTGTATTATCCCAATGTGCTACATATG
TTATCCAATGTTTGTCTGATCTGACAACAGTCGAAGAAGCATCGTCAAAT
ATCATTGGCTTTTCTTTCTTGATGACATCAACATACTGGAGGAGATTTTC
ATGCCAAACCACAAGATACATATCACCGTCCAAATCACCTCCACTCATCT
TATCGGCAACTGGTCGAACACCTTGTGTTGAGAACAAAATCACATTCTTC
ATCTCTTTGGGAAATCCTTTTGGTGGTCTGACTGCTTCCAGTATTTGAAT
ATCTCCTGGTGAATACGAAGGACTTCTGCTCACGATGACATTGCCGATAT
GAGCACCTTTCTCAGTCAGCATGATGCATTGCCCCTCTTCAAGATACTGG
TTTAGGTATTTTGGAATCACTGCACCAAACACAAGTCGGGAGGAAGCCAA
TGGGATTTGTATGCGATCTTTGATATCCCTTTTGTCTTTCCGCAGCGACT
GTATGAAACTACCTTCAACATTTTGAATAAGGTTTGTATAGGCTGAGGGG
ATGACATACTTGAATCCATATTTCCTgagtaatattttgaaagttgatTC
TTTACGGTTCAAGATGGAACATCTGAATGCTTCTGATGCGTCGTGTCTAC
ATTTTGTTATTGATGTAAGGTAATCCCTCTGTATTGCCATCCAGTCCTCA
TCCTTTACTAAATGACTCGTCAACGTGATGAACTGCTTGTTCACCTTCCC
AAATTTTGGTCGACAGCTCGTTTCAACGATGCCAAGGAAATTGTTACCTT
GGTCGTTCGCCACAATTTTCATCATGGAACTCCTCAGGGTGATAACCGAT
CGAGTCTGAT Coding sequence (CDS) from alignment at sc0000201:201481..203240 >TCONS_00014991 ID=TCONS_00014991|Name=TCONS_00014991|organism=Clytia hemisphaerica|type=CDS|length=1758bp|location=Sequence derived from alignment at sc0000201:201481..203240 (Clytia hemisphaerica)
GTTGAATAGCATGGCAACCTCGTTCAGCTCCATGGTGATCTTCTTGTACA
GTAAGAATAATTGGTCGATAATTATGAGAATTTCATTCTTCAATTCATCT
CTCCTTGAGTTTTTACAAAACCAACTTTCATATTCGGAAAAACCATTCTC
CAGCTCCTTGATTTGGTGTTTGAGTTGCGCAACACTTCCCTTGATCAGTT
GATCATGTTGCATCAAATTGTCGAGTACATTGATGTGCTTCTCCACTTTC
GCTTGGAAGTCAGCttcattcttttcttcttctttggaAATCTCCTCCCT
CAATCTTTCATGTTGTTCCAGCTGCTCTTCAATCGCTTTTTGTTCGTCTC
TGAACGTTTGAACAAACTCTCCAAGCTCTCCATGAAGTCTTTTCAACCAT
TGAACTTTATAATACGTGGGATCTTTGCTGTGCTCTTTTTGACATGTTTT
CTCTTTACAGTCAAAAGTACAGTTAATGATTGTTTCCATAACAACCTCCT
TAGGACGTTGTTGTAAGATCTTCACCCAATTTTTTTGGTACACGTCTATG
TCATCTCCAACCGCCAAAATCCTTGGTGAACTAAACAACTTGTCAAGATC
TTCCCTGCTTGTATATACCAGGCTGTCACTGAATTTCGCCCAGTCGTCAA
GTATAGGATACCCGTTTCGTTTTTCtcttaaattttccaaaacGGTTAAT
GCTTGATGACTCATCTTCTCCCAAATTGGAAGATTTAATTGAGAAcgatt
tctttcactttttcgcTTGAAACATctgtttgaaatttctttaagtCTTT
TCAAATCATCTTGGACATTATCTACAGCTCTGGAAAAGATTTTGCAAAGC
TCTTGGCATTCGGATGAGTTGACGCCAAACTCTTCGGCAACCTCATAAAA
GCAGCTGTCAATTTGCCCAAGAATTGTATTATCCCAATGTGCTACATATG
TTATCCAATGTTTGTCTGATCTGACAACAGTCGAAGAAGCATCGTCAAAT
ATCATTGGCTTTTCTTTCTTGATGACATCAACATACTGGAGGAGATTTTC
ATGCCAAACCACAAGATACATATCACCGTCCAAATCACCTCCACTCATCT
TATCGGCAACTGGTCGAACACCTTGTGTTGAGAACAAAATCACATTCTTC
ATCTCTTTGGGAAATCCTTTTGGTGGTCTGACTGCTTCCAGTATTTGAAT
ATCTCCTGGTGAATACGAAGGACTTCTGCTCACGATGACATTGCCGATAT
GAGCACCTTTCTCAGTCAGCATGATGCATTGCCCCTCTTCAAGATACTGG
TTTAGGTATTTTGGAATCACTGCACCAAACACAAGTCGGGAGGAAGCCAA
TGGGATTTGTATGCGATCTTTGATATCCCTTTTGTCTTTCCGCAGCGACT
GTATGAAACTACCTTCAACATTTTGAATAAGGTTTGTATAGGCTGAGGGG
ATGACATACTTGAATCCATATTTCCTgagtaatattttgaaagttgatTC
TTTACGGTTCAAGATGGAACATCTGAATGCTTCTGATGCGTCGTGTCTAC
ATTTTGTTATTGATGTAAGGTAATCCCTCTGTATTGCCATCCAGTCCTCA
TCCTTTACTAAATGACTCGTCAACGTGATGAACTGCTTGTTCACCTTCCC
AAATTTTGGTCGACAGCTCGTTTCAACGATGCCAAGGAAATTGTTACCTT
GGTCGTTCGCCACAATTTTCATCATGGAACTCCTCAGGGTGATAACCGAT
CGAGTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00014991-exon-sc0000201-1491911889:201481..203240 | TCONS_00014991-exon-sc0000201-1491911889:201481..203240 | Clytia hemisphaerica | exon |
| TCONS_00014991-exon-sc0000201-1510915933:201481..203240 | TCONS_00014991-exon-sc0000201-1510915933:201481..203240 | Clytia hemisphaerica | exon |
| TCONS_00014991-exon-sc0000201-1575043694:201481..203240 | TCONS_00014991-exon-sc0000201-1575043694:201481..203240 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000201 | supercontig | sc0000201:201481..203240 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007855 | RNA-dep_RNA_pol_euk-typ |
Vocabulary: Molecular Function
| Term | Definition |
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| GO:0003968 | RNA-directed 5'-3' RNA polymerase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003968 |
RNA-directed 5'-3' RNA polymerase activity |
Blast
The following BLAST results are available for this feature:
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