TCONS_00014989 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014989
Unique NameTCONS_00014989
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length833

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014989 ID=TCONS_00014989|Name=TCONS_00014989|organism=Clytia hemisphaerica|type=transcript|length=833bp
GTAAACACCAACGCTTGCTGAAGTCTTATGAAGAAAACATCGACAAAGAG
CAGATCGCTGCATTTGATTTAGCATTCAGTTCAATAGAACACGAAATTGA
AGTTTATTTTGATCTTGATGAAGTCAGACGTGAAGATCAAATTTCAATAA
CCAAGCAGCTTACACTATCTTTGCGACGCGAGGCCATCCGATGCCGACGT
GACCAAACAGAGCATAACTATCCTGTATTTCGCAAGCGGCACGAGATTTT
GTCATCGTTACAGAAACATGACGCAGTAGTTATTGTGGCTCACACTGGAA
GTGGTAAAAGCACCCAAGTTCCACAATATCTCGCTGATGATCTGCATCAC
GTGTTAAACCTTGGTAAACACTTTCCAAAGATCGCTTGTACTCAACCAAG
ACGTGTCGCCTGTAGGAGAATAGCTGAACGTGTTTCGAAAGAATACGCTG
GAGCTGTTCCTATTCCCACACAAACAGAATCAAAAGATGAAAAGCCAACT
TATGGCGGCGAGAGACGTGTGGCAGCATACCCGTTGTACGCAAGCCTTAC
TAAACAAGACCAAGATCGTGCCTTGGCTACAGAAGATCGAGTCGGGTGTG
atcaaaaaattaatcaaagctGTACATATCGAAAGAAGAACAGTTTAGAG
TATGACACAGGAGATTTGGAACTAAAAGGTACTGTTGGAGAATTAGGACA
ATGGATCGGATGTCAAATCGGAACAACAGGGAAATCATTTGTGGAGGCAC
AACAATGTAGAAATTTCAGTAAATATACAAGAGTTTGCTTTGTCACGGAA
GGTCTATTGTTGCAGAAGTTGAAAAATTCATCG
Run BLAST on NCBI

protein sequence of TCONS_00014989-protein

>TCONS_00014989-protein ID=TCONS_00014989-protein|Name=TCONS_00014989-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
KHQRLLKSYEENIDKEQIAAFDLAFSSIEHEIEVYFDLDEVRREDQISIT
KQLTLSLRREAIRCRRDQTEHNYPVFRKRHEILSSLQKHDAVVIVAHTGS
GKSTQVPQYLADDLHHVLNLGKHFPKIACTQPRRVACRRIAERVSKEYAG
AVPIPTQTESKDEKPTYGGERRVAAYPLYASLTKQDQDRALATEDRVGCD
QKINQSCTYRKKNSLEYDTGDLELKGTVGELGQWIGCQIGTTGKSFVEAQ
QCRNFSKYTRVCFVTEGLLLQKLKNSS
Run BLAST on NCBI

transcript from alignment at sc0000201:198736..199568

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014989 ID=TCONS_00014989|Name=TCONS_00014989|organism=Clytia hemisphaerica|type=transcript|length=833bp|location=Sequence derived from alignment at sc0000201:198736..199568 (Clytia hemisphaerica)
CGATGAATTTTTCAACTTCTGCAACAATAGACCTTCCGTGACAAAGCAAA
CTCTTGTATATTTACTGAAATTTCTACATTGTTGTGCCTCCACAAATGAT
TTCCCTGTTGTTCCGATTTGACATCCGATCCATTGTCCTAATTCTCCAAC
AGTACCTTTTAGTTCCAAATCTCCTGTGTCATACTCTAAACTGTTCTTCT
TTCGATATGTACagctttgattaattttttgatCACACCCGACTCGATCT
TCTGTAGCCAAGGCACGATCTTGGTCTTGTTTAGTAAGGCTTGCGTACAA
CGGGTATGCTGCCACACGTCTCTCGCCGCCATAAGTTGGCTTTTCATCTT
TTGATTCTGTTTGTGTGGGAATAGGAACAGCTCCAGCGTATTCTTTCGAA
ACACGTTCAGCTATTCTCCTACAGGCGACACGTCTTGGTTGAGTACAAGC
GATCTTTGGAAAGTGTTTACCAAGGTTTAACACGTGATGCAGATCATCAG
CGAGATATTGTGGAACTTGGGTGCTTTTACCACTTCCAGTGTGAGCCACA
ATAACTACTGCGTCATGTTTCTGTAACGATGACAAAATCTCGTGCCGCTT
GCGAAATACAGGATAGTTATGCTCTGTTTGGTCACGTCGGCATCGGATGG
CCTCGCGTCGCAAAGATAGTGTAAGCTGCTTGGTTATTGAAATTTGATCT
TCACGTCTGACTTCATCAAGATCAAAATAAACTTCAATTTCGTGTTCTAT
TGAACTGAATGCTAAATCAAATGCAGCGATCTGCTCTTTGTCGATGTTTT
CTTCATAAGACTTCAGCAAGCGTTGGTGTTTAC

Coding sequence (CDS) from alignment at sc0000201:198736..199568

>TCONS_00014989 ID=TCONS_00014989|Name=TCONS_00014989|organism=Clytia hemisphaerica|type=CDS|length=831bp|location=Sequence derived from alignment at sc0000201:198736..199568 (Clytia hemisphaerica)
CGATGAATTTTTCAACTTCTGCAACAATAGACCTTCCGTGACAAAGCAAA
CTCTTGTATATTTACTGAAATTTCTACATTGTTGTGCCTCCACAAATGAT
TTCCCTGTTGTTCCGATTTGACATCCGATCCATTGTCCTAATTCTCCAAC
AGTACCTTTTAGTTCCAAATCTCCTGTGTCATACTCTAAACTGTTCTTCT
TTCGATATGTACagctttgattaattttttgatCACACCCGACTCGATCT
TCTGTAGCCAAGGCACGATCTTGGTCTTGTTTAGTAAGGCTTGCGTACAA
CGGGTATGCTGCCACACGTCTCTCGCCGCCATAAGTTGGCTTTTCATCTT
TTGATTCTGTTTGTGTGGGAATAGGAACAGCTCCAGCGTATTCTTTCGAA
ACACGTTCAGCTATTCTCCTACAGGCGACACGTCTTGGTTGAGTACAAGC
GATCTTTGGAAAGTGTTTACCAAGGTTTAACACGTGATGCAGATCATCAG
CGAGATATTGTGGAACTTGGGTGCTTTTACCACTTCCAGTGTGAGCCACA
ATAACTACTGCGTCATGTTTCTGTAACGATGACAAAATCTCGTGCCGCTT
GCGAAATACAGGATAGTTATGCTCTGTTTGGTCACGTCGGCATCGGATGG
CCTCGCGTCGCAAAGATAGTGTAAGCTGCTTGGTTATTGAAATTTGATCT
TCACGTCTGACTTCATCAAGATCAAAATAAACTTCAATTTCGTGTTCTAT
TGAACTGAATGCTAAATCAAATGCAGCGATCTGCTCTTTGTCGATGTTTT
CTTCATAAGACTTCAGCAAGCGTTGGTGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008382XLOC_008382Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014989-exon-sc0000201-1491911889:198736..199568TCONS_00014989-exon-sc0000201-1491911889:198736..199568Clytia hemisphaericaexon
TCONS_00014989-exon-sc0000201-1510915933:198736..199568TCONS_00014989-exon-sc0000201-1510915933:198736..199568Clytia hemisphaericaexon
TCONS_00014989-exon-sc0000201-1575043694:198736..199568TCONS_00014989-exon-sc0000201-1575043694:198736..199568Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014989-proteinTCONS_00014989-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000201supercontigsc0000201:198736..199568 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.113711	0.110886	0.193124	0.251922	0.306691	0.424114	0.730965	0.547457	0.622842	1.3056	0.518419	0.605846	0.491565	0.903184	0.129137	0.866151	0.469492	0.437468	1.08789	1.20165	0.219884	0.241316	0.456325	0.651931	0.976689	1.74334	2.3388	1.74722	0.12621	0.128588
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014989 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top