TCONS_00014988 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014988
Unique NameTCONS_00014988
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1045

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014988 ID=TCONS_00014988|Name=TCONS_00014988|organism=Clytia hemisphaerica|type=transcript|length=1045bp
AAAGATGATGATGGGATTTCAGATTCAGACTATGATAGTTCTTGGGAGAG
TGACGACGACGACACTGAATCAAAGAAGAAGAGAAGGGAAGCAAAAAGAA
AGGTAGCAAACAAAtggagaaagaaagaaatggaCTGTCTTATTCACCAT
GTTGTAAAAATCATTTTCGACAAAATATTGATGGAGAAAGATTTACTCAA
TGGGGATGTTTTGGTTTTTCTTCCCGGCCAAGGCGAGATTACCGAGTGTG
TTGACCTGATCAATAAACGTGCACAAGAAGAATCATCAAGAACTGGACAA
CAAAGAGGCAGATTCCTAACAACTAAGGTGGTCTGTTGCACAAATATCGC
AGAAACGTCTTTGACTATCCCTGGTGTTACCTATGTCATAGATGCTGGCA
AAGCTAAGAAAATGAGATATGATAATAAACTGAGAGTATCGGCTCTTAAA
TTAAATGACATTTCTCAAGCATCTGCACAACAGAGAACAGGACGTGCTGG
TCGAGTACAACCAGGGAAATGTTATCGTTTGTATAGCAAAGCACACCATG
ATAAAGTTATGGCTCCGTTTGATGAGCCAGAAATGAAATATAAGGCTATT
GATGAACTGTATTTGTATGCCATAGATGTTTCCAAGGGCTTAGAGAAAAT
CCATTTAATGGAAGATGCTTGTCCAACTCTTGACTCTATTCAATATGCAA
AAACAAGATTGCTAAACTTGGAATATCTTGAGCCCCATGAATCTCAAGAT
ATAGAGGTGAATATTTCAACAGAAGGAAAATTTGCTCTAACTGTTATGGG
TCAAGTCTCTTTAGAAGGTGCCAAGATGATCCTAGCGTCCAAGAAGTATG
GATTAGTGTACGAAAGTATCAAATTAGCAGTGCTTCTTCAACAGAATATC
TACTCAGATAAGAATGTCAATGTTGAACGATCAAAATATGCAAACCATCT
GGGTGATCATTTAACTTTATTAAATCTTTACAAACATTTCGAGAAGAGGG
TGAAATCATCCGAGACAGCTGCTGAAATATGGTGCAATGAGTTAG
Run BLAST on NCBI

protein sequence of TCONS_00014988-protein

>TCONS_00014988-protein ID=TCONS_00014988-protein|Name=TCONS_00014988-protein|organism=Clytia hemisphaerica|type=polypeptide|length=348bp
KDDDGISDSDYDSSWESDDDDTESKKKRREAKRKVANKWRKKEMDCLIHH
VVKIIFDKILMEKDLLNGDVLVFLPGQGEITECVDLINKRAQEESSRTGQ
QRGRFLTTKVVCCTNIAETSLTIPGVTYVIDAGKAKKMRYDNKLRVSALK
LNDISQASAQQRTGRAGRVQPGKCYRLYSKAHHDKVMAPFDEPEMKYKAI
DELYLYAIDVSKGLEKIHLMEDACPTLDSIQYAKTRLLNLEYLEPHESQD
IEVNISTEGKFALTVMGQVSLEGAKMILASKKYGLVYESIKLAVLLQQNI
YSDKNVNVERSKYANHLGDHLTLLNLYKHFEKRVKSSETAAEIWCNEL
Run BLAST on NCBI

transcript from alignment at sc0000201:197069..198113

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014988 ID=TCONS_00014988|Name=TCONS_00014988|organism=Clytia hemisphaerica|type=transcript|length=1045bp|location=Sequence derived from alignment at sc0000201:197069..198113 (Clytia hemisphaerica)
CTAACTCATTGCACCATATTTCAGCAGCTGTCTCGGATGATTTCACCCTC
TTCTCGAAATGTTTGTAAAGATTTAATAAAGTTAAATGATCACCCAGATG
GTTTGCATATTTTGATCGTTCAACATTGACATTCTTATCTGAGTAGATAT
TCTGTTGAAGAAGCACTGCTAATTTGATACTTTCGTACACTAATCCATAC
TTCTTGGACGCTAGGATCATCTTGGCACCTTCTAAAGAGACTTGACCCAT
AACAGTTAGAGCAAATTTTCCTTCTGTTGAAATATTCACCTCTATATCTT
GAGATTCATGGGGCTCAAGATATTCCAAGTTTAGCAATCTTGTTTTTGCA
TATTGAATAGAGTCAAGAGTTGGACAAGCATCTTCCATTAAATGGATTTT
CTCTAAGCCCTTGGAAACATCTATGGCATACAAATACAGTTCATCAATAG
CCTTATATTTCATTTCTGGCTCATCAAACGGAGCCATAACTTTATCATGG
TGTGCTTTGCTATACAAACGATAACATTTCCCTGGTTGTACTCGACCAGC
ACGTCCTGTTCTCTGTTGTGCAGATGCTTGAGAAATGTCATTTAATTTAA
GAGCCGATACTCTCAGTTTATTATCATATCTCATTTTCTTAGCTTTGCCA
GCATCTATGACATAGGTAACACCAGGGATAGTCAAAGACGTTTCTGCGAT
ATTTGTGCAACAGACCACCTTAGTTGTTAGGAATCTGCCTCTTTGTTGTC
CAGTTCTTGATGATTCTTCTTGTGCACGTTTATTGATCAGGTCAACACAC
TCGGTAATCTCGCCTTGGCCGGGAAGAAAAACCAAAACATCCCCATTGAG
TAAATCTTTCTCCATCAATATTTTGTCGAAAATGATTTTTACAACATGGT
GAATAAGACAGtccatttctttctttctccaTTTGTTTGCTACCTTTCTT
TTTGCTTCCCTTCTCTTCTTCTTTGATTCAGTGTCGTCGTCGTCACTCTC
CCAAGAACTATCATAGTCTGAATCTGAAATCCCATCATCATCTTT

Coding sequence (CDS) from alignment at sc0000201:197069..198113

>TCONS_00014988 ID=TCONS_00014988|Name=TCONS_00014988|organism=Clytia hemisphaerica|type=CDS|length=1044bp|location=Sequence derived from alignment at sc0000201:197069..198113 (Clytia hemisphaerica)
TAACTCATTGCACCATATTTCAGCAGCTGTCTCGGATGATTTCACCCTCT
TCTCGAAATGTTTGTAAAGATTTAATAAAGTTAAATGATCACCCAGATGG
TTTGCATATTTTGATCGTTCAACATTGACATTCTTATCTGAGTAGATATT
CTGTTGAAGAAGCACTGCTAATTTGATACTTTCGTACACTAATCCATACT
TCTTGGACGCTAGGATCATCTTGGCACCTTCTAAAGAGACTTGACCCATA
ACAGTTAGAGCAAATTTTCCTTCTGTTGAAATATTCACCTCTATATCTTG
AGATTCATGGGGCTCAAGATATTCCAAGTTTAGCAATCTTGTTTTTGCAT
ATTGAATAGAGTCAAGAGTTGGACAAGCATCTTCCATTAAATGGATTTTC
TCTAAGCCCTTGGAAACATCTATGGCATACAAATACAGTTCATCAATAGC
CTTATATTTCATTTCTGGCTCATCAAACGGAGCCATAACTTTATCATGGT
GTGCTTTGCTATACAAACGATAACATTTCCCTGGTTGTACTCGACCAGCA
CGTCCTGTTCTCTGTTGTGCAGATGCTTGAGAAATGTCATTTAATTTAAG
AGCCGATACTCTCAGTTTATTATCATATCTCATTTTCTTAGCTTTGCCAG
CATCTATGACATAGGTAACACCAGGGATAGTCAAAGACGTTTCTGCGATA
TTTGTGCAACAGACCACCTTAGTTGTTAGGAATCTGCCTCTTTGTTGTCC
AGTTCTTGATGATTCTTCTTGTGCACGTTTATTGATCAGGTCAACACACT
CGGTAATCTCGCCTTGGCCGGGAAGAAAAACCAAAACATCCCCATTGAGT
AAATCTTTCTCCATCAATATTTTGTCGAAAATGATTTTTACAACATGGTG
AATAAGACAGtccatttctttctttctccaTTTGTTTGCTACCTTTCTTT
TTGCTTCCCTTCTCTTCTTCTTTGATTCAGTGTCGTCGTCGTCACTCTCC
CAAGAACTATCATAGTCTGAATCTGAAATCCCATCATCATCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008381XLOC_008381Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014988-exon-sc0000201-1491911889:197069..198113TCONS_00014988-exon-sc0000201-1491911889:197069..198113Clytia hemisphaericaexon
TCONS_00014988-exon-sc0000201-1510915933:197069..198113TCONS_00014988-exon-sc0000201-1510915933:197069..198113Clytia hemisphaericaexon
TCONS_00014988-exon-sc0000201-1575043694:197069..198113TCONS_00014988-exon-sc0000201-1575043694:197069..198113Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014988-proteinTCONS_00014988-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000201supercontigsc0000201:197069..198113 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.084875	0.165533	0.14415	0.141028	0.85844	0.497457	0.2728	0.817256	0.214568	0.885922	0.300964	0.508736	0.479805	0.322418	0.626533	0.672366	0.0637153	0.195918	0.766904	1.13295	0.369279	0.360242	0.389264	0.752032	1.41246	1.21992	1.51295	1.49045	0.188409	0.143969
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR027417P-loop_NTPase
Blast
[Close]
BLAST of TCONS_00014988 vs. Swiss-Prot (Human)
Match: DHX35 (Probable ATP-dependent RNA helicase DHX35 OS=Homo sapiens GN=DHX35 PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.280e-31
Identity = 106/314 (33.76%), Postives = 155/314 (49.36%), Query Frame = 1 
Query:  199 NGDVLVFLPGQGEITECVDLINKRAQEESSRTGQQRG-RFLTT---------------------KVVCCTNIAETSLTIPGVTYVIDAGKAKKMRYDNKLRVSALKLNDISQASAQQRTGRAGRVQPGKCYRLYSKAHHDKVMAPFDEPEMKYKAIDE--LYLYAIDVSKGLEKIHLMEDACPTLDSIQYAKTRLLNLEYLEP--HESQDIEVNISTEGKFALTVMGQVSLEGAKMILASKKYGLVYESIKLAVLLQ-QNIY------SDKNVNVERSKYANHLGDHLTLLNLYKHFEKRVKSSETAAEIWCNE 1041
            +GDVL FL GQ E+   V ++ ++A+   +RTG +R  R L                       KV+  TN+AETS+TI G+ YVID G  K   Y+ +  +  L +  +SQASA QR GR GR + GKCYRLY++   DK +     PEM+   +    L L A+ +   L + H M  + P   S+  A   L  L  L+     ++ + + I+   +F L  M       AKM+L S  +G   E + +A ++Q QNI+          + V R K+A   GDHLT+LN+Y+ F K  K S+     WC E
Sbjct:  274 DGDVLAFLTGQEEVETVVSMLIEQARA-LARTGMKRHLRVLPMYAGLPSFEQMKVFERVSRSVRKVIVATNVAETSITISGIVYVIDCGFVKLRAYNPRTAIECLVVVPVSQASANQRAGRGGRSRSGKCYRLYTEEAFDK-LPQSTVPEMQRSNLAPVILQLKALGIDNVL-RFHFM--SPPPAQSMVQALELLYALGGLDKDCRLTEPLGMRIA---EFPLNPM------FAKMLLESGNFGCSQEILSIAAMMQIQNIFVVPPNQKSHAIRVHR-KFAVEEGDHLTMLNIYEAFIKHNKDSK-----WCQE 567
The following BLAST results are available for this feature:
BLAST of TCONS_00014988 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DHX351.280e-3133.76Probable ATP-dependent RNA helicase DHX35 OS=Homo ... [more]
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