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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014977 ID=TCONS_00014977|Name=TCONS_00014977|organism=Clytia hemisphaerica|type=transcript|length=1874bp
cttctaaacaatgaattactcagtggggctgaaattccaagGTCGTATCT
GTCGAACAAATAAAATTAACACAAACATCGACTGATTCAGAATGTTTCGA
GGacaaaaccctttgttgttgaTCATTCCAGTACTTGGAGTCATTGTACT
TTtgagtttgtttacattcaagGATAGCTCTTACGTAAAATTCACTCCGA
CCAACACCCAATCAAATGATTTGAGTGATGTCAAAATAATACACGAAGAA
GAACTTCGTCATGTTCAAGAATTGAGAGAAATGGTCGGTAGAATTGCAAG
TTCATTGAATGTCTCATTCAACCACAAAGTCGCGCAAAACAAAAAGATAG
ATAAACCTAACATGGGTAACATGAAAACAAGTGAGTCATTCTCACAGCGT
TCACAGCAAACTCAGATTAAAGAACCCAACGTTAGATTACTAAACGAGGA
AGATTTGAAACCATCAAGCAGTCAAATCTTATTCCTTGTTTTCTCTCATA
TTGGAAATTATGAAAGGCGTACAACCATCAGGCGTACTTGGGGAAATCCT
GATAATTTTCCTAAACAAAGAGCAATGTTTAAGAATGCAACATACAAAGT
GCTCTTCATAACTGGTTTTGCAGCTGACAAGATTAAAAAGGCGAAAGAAG
AATCAAAGAAACACGGGGATATGTTGATTACTAACCGAACTGAAAATTAT
TTCGATATTTCACGAAGAACACAATTTGGTATACATTGGACAATCAGAAA
TTGCAAATTTGACTACTTCTTTAAAACTGATGATGATGTCTTTGTAAGTA
TTCCGAATACCtacaaacttttttatcaagATGCTTTTGCTGTTGAGCAC
AAGACTTCTTTATATGCTGGTTTAATGCATATGCGTGGTGGTCCAATTCG
AGACAAGAGATCTAAATGGtatattgacaaaaaactgTGGGGACAAACAA
TTTACGCTCCGTTTGCTACTGGGATGGCTATCATATTATCGAGAAATGTT
GCTGAGCGTATTGAACCATATTTCGAAtggaaaaatgttttcccaCTTGA
AGATGTCAATATTGGCTTTTATGTTTTCGTTGCAAAAGTACCAAATATTG
GAGTGAGGCCGTCCAAAGGAGCAGAATTTGTGCTTGATTACACTGTGGCA
GTTTGTAGTCATTATAAAAGGGAAACTATAACTATGCACCCTGTGAAGAA
TGAAGCGTGTATGAGAAAACTGGTGCAAGCAAGCCAGCAATAATTTCATA
GACTGATGTTAAAGAATCCTGAACGCCTCTAGTATCGGCAACGTTTGGTT
ACACCGATATCCCAAAAACATACTATTCTTAACTGGTAATCTACATAATC
CCCTGTCTCAGTAATCTGACGAAACCTCTTGTGGCCAGTTGAGTATATTT
ATCGAGGGCTTCTACAAGCTAAgaattttatagttttttaaatgttttta
tacaTGTTTTATATAGTTTTTATAGTTGCttgaaactttgagtatcaagc
aattcttatctcaacttcaatttattgtgTACATGTTTATATACAATATG
GTGGTGTTCCACAAGGTTCTTTACTATACTAGGGAGGTTGACCATAGCCA
AAAGATCGGTTACGCAAATTTGGAgataaacttttgttttgagttccttg
atacttttaacaaaaaattgtctttataagttgtttctgaattgtctgaa
tttattctatcaagagtaatttagcaattaaattacaaaaatatgacgtt
atgaaccttaaaaagacgttaataaaatattatattaccctcttttacaa
aaaatgccaagttttaatgggtaattaacctttttgttttgaattttttt
ttaatattctgcaaaagattgaac Run BLAST on NCBI transcript from alignment at sc0000201:413299..417974- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014977 ID=TCONS_00014977|Name=TCONS_00014977|organism=Clytia hemisphaerica|type=transcript|length=4676bp|location=Sequence derived from alignment at sc0000201:413299..417974- (Clytia hemisphaerica)
CTTCTAAACAATGAATTACTCAGTGGGGCTGAAATTCCAAGGTATTTTCC
CCAACGGGGACGAAATTTTGTCAAATTTTCCAGCGGGGCTGAGGGTCTGT
GATACAGGGGTGTTCCGACGTAATCGTCTTGTTTCGACGTTACTTATTCA
GATCTAAGGGAGCGGTCATTAAGTATAGCATATACCGGGGTGGAAGGGAT
TTTGGTAGGGCATGAAATTTTTTTCCCTTATTTTGGGTAGGGTATGAAAA
AAACTCGAGGGCTTTGAGTAGGGCACGAAAATATTTTTAGCAGAATCTTA
TTTCAACAAAAATTTCAATTTTGTCAATTCTAAAACTCCATTATTCTTGC
GAACCCTGAAATCTGAGAAATTTTAAAGCGCCATAAAGCTGCCATCTGGT
AAGGGGTAGGGTAAGAAAATTTTCATCCAATTTTTGGTAGGGTATGAAAT
TTATTTGAGAACTTTTGGTAGGGTATGAAAATAAGAAGTCTGCCAAAAAA
ACCCTTCCACCCAGGTATATATTATACTTAATGACCACTTCCTAAGCAAC
AGCAAAAGGTCCGCATCGTACATTTTTGTTATAAAGATTTGTTAACCGTT
AGGAAAAACTTGTTAAGGTGAAAATTCTTGAATACTACAGAAAGTTCTGT
ACTTTTTGAAGCGATCGCCAAAAGTGCGTTTGAAACACGCTGATCTAGTA
TGTTAAGAACATTCGTATTGTATTAGTTTATTTGATGTGCTTAAAAAAAA
GACAATTACCATTTTTCATAAAGCATTTCTCATTAAATTTGTTCAAAATC
AGATTAGCTCAGAGAAAAATGACAGATTAAATCAGTCAACTTTTGTTCGG
TTATGTTATGATACAATTATATATAATCTTTCTATCTTGTATCTGCATGT
GGGTTTCATACAAAATGAAAGAAAGTTTTTAATGATATTATATATAGATT
TATTTCGTTTGGTATTAACGTAGCCCGGGGTCCACTTAGAGCTTTTTTAT
GTTTTTTTTTGGCGCTGATAAGTGGCCCGGTAGTATATGGTAATATGCTT
TTGCCTAGGCGGACTGTAAAACAGTCCGCCAGATTTTAGTTGTATTTGGA
AGGTAAAAACAGTATGAAGCAATATTTTTATTTGAGAATAAGGGATTGCA
AATCTGTTAATCGTGTTTGTTTCTCATTTTTGATTATATCCTTCAACTCC
AAGTAGTTTTATTGTTATTTTGATTTTAATTTTTTTTTATTCAAAATGGC
GACCTCGCCAAATGCTCCTAGTCTACTTCACTGGACTCAGCGTCATAAAA
AATTATCAAAAAGCAAAGTTCAGCCAGAAGTAGGCTCTAGTCTAGTATTA
ACGTAGCATAGTTATAACGATAGCATGCAATGTTGTTTGGTTTGATATAT
TTTGAAATAAGAGAGGTTATTGGGATCGTCGACTGGGGGTGGGTGTTATG
TTCCCTCCTTAGGGCGGGGGTGATTTTCCTAATCTCTAAACAGGAGAATC
TTCTGTAGCTTGCATATGCAAGCTCTAAGGTTTCATCTGTCTTTTATGTT
ACCTACCGCTTGGTCATCATAGATGTTTGTTATTTAAAAGGTCGGCTAAT
TTTAGTTGTGAACAACTGAATTGACAAACATGCGTGCAATGTCTTGCGAT
CTTGGACAGCAAATTTATTTATCAAAACCAGGCGATTGACCAGAAACACA
AAACGAAAATAACACCTTAAAGATCGGATATCAAGGTTTAAATTTTTAGT
TCAAAATTATGATTTGGGCTAAAAGTTTAAATAAATAAGGAAAGGAATGT
TATGATTCTTGACTTACAATAAATTCATATAGAAATGATATGATTTGGAG
GATATGAATGTTAATTTATTACTTTCAGGAAATATGGCGCGTTTCATAGA
CTTTCAGCTGTTTTTTTTGGGGGGCTTGGTGGTAAATATGATTTCTAAAA
TCACTAGCAACCTTTTGAGCTGCTTTAGCGAACAAATTTACACCGCAAAC
CATCGAACCACCATTCACGCCCTATTACTGGGACCTTATTTCGGGTTTTC
TTTGAGCACCCCTGTCTCGCAGCCCCGGTATGGAACTTCTTTCCACAGCA
GGGATAAAGATTTATATCGAAATCTCAATGGGGTTGGAAATTCTATTATT
CCAAGCTTAAAAAATCCATTGGGAATTGGTTTTGGAATGCAATATTTGTT
CCATCGAATTTCGAATGAGGATGAAATCAAAGTCAATTTCCCAGTGGGGC
TGAAATTGTATGGTATTTTTTCCTTCGGGGACCAAATTTTGGCAAGATTT
TCAAGCGGGTCTCTGGGATGTCTTTGAAAATCCAATACATTAGACTTATA
AAACTTGATCAGGTTCCAGATTTTCAGTTCTATCAGGAACTGAAGTTATA
AAATTGTAAAAAAGATCAAAGAAAAAGTAGATACCGGTATTCCAAATTCT
CTCGGGTAAATTAATGCGTGTCCAAATTTTCATTAATTTCTCGGAGGCAA
TTCCACCCCTCCTAGCATAAAAAATTATACATTTAAAAGAAGCGCATTAT
GTAGAACATGAAAATCGGTGTTACTTAAATTTAGGTTTTGCCAATTTTGC
GAAAAACCGCAAAAACCAAAAAATGCTGACGTCAGCAAAATTTGTTTTTT
AGATAACTCCAGTTTGGCTAATGGTATAAACATGAAATTCGGACCAAAGT
TGCATATCATTGATAAAAATATTTTTGCATAATCCTTTTTTTCAAATTTT
GCTGACGTCAGCAGAAATCATTTGATGTAAACGTCATAGACAAGAAAAGC
ATCTCACATATATAAAATATTTTCCAAATCTTTCCATTTTTAGGTCGTAT
CTGTCGAACAAATAAAATTAACACAAACATCGACTGATTCAGAATGTTTC
GAGGACAAAACCCTTTGTTGTTGATCATTCCAGTACTTGGAGTCATTGTA
CTTTTGAGTTTGTTTACATTCAAGGATAGCTCTTACGTAAAATTCACTCC
GACCAACACCCAATCAAATGATTTGAGTGATGTCAAAATAATACACGAAG
AAGAACTTCGTCATGTTCAAGAATTGAGAGAAATGGTCGGTAGAATTGCA
AGTTCATTGAATGTCTCATTCAACCACAAAGTCGCGCAAAACAAAAAGAT
AGATAAACCTAACATGGGTAACATGAAAACAAGTGAGTCATTCTCACAGC
GTTCACAGCAAACTCAGATTAAAGAACCCAACGTTAGATTACTAAACGAG
GAAGATTTGAAACCATCAAGCAGTCAAATCTTATTCCTTGTTTTCTCTCA
TATTGGAAATTATGAAAGGCGTACAACCATCAGGCGTACTTGGGGAAATC
CTGATAATTTTCCTAAACAAAGAGCAATGTTTAAGAATGCAACATACAAA
GTGCTCTTCATAACTGGTTTTGCAGCTGACAAGATTAAAAAGGCGAAAGA
AGAATCAAAGAAACACGGGGATATGTTGATTACTAACCGAACTGAAAATT
ATTTCGATATTTCACGAAGAACACAATTTGGTATACATTGGACAATCAGA
AATTGCAAATTTGACTACTTCTTTAAAACTGATGATGATGTCTTTGTAAG
TATTCCGAATACCTACAAACTTTTTTATCAAGATGCTTTTGCTGTTGAGC
ACAAGACTTCTTTATATGCTGGTTTAATGCATATGCGTGGTGGTCCAATT
CGAGACAAGAGATCTAAATGGTATATTGACAAAAAACTGTGGGGACAAAC
AATTTACGCTCCGTTTGCTACTGGGATGGCTATCATATTATCGAGAAATG
TTGCTGAGCGTATTGAACCATATTTCGAATGGAAAAATGTTTTCCCACTT
GAAGATGTCAATATTGGCTTTTATGTTTTCGTTGCAAAAGTACCAAATAT
TGGAGTGAGGCCGTCCAAAGGAGCAGAATTTGTGCTTGATTACACTGTGG
CAGTTTGTAGTCATTATAAAAGGGAAACTATAACTATGCACCCTGTGAAG
AATGAAGCGTGTATGAGAAAACTGGTGCAAGCAAGCCAGCAATAATTTCA
TAGACTGATGTTAAAGAATCCTGAACGCCTCTAGTATCGGCAACGTTTGG
TTACACCGATATCCCAAAAACATACTATTCTTAACTGGTAATCTACATAA
TCCCCTGTCTCAGTAATCTGACGAAACCTCTTGTGGCCAGTTGAGTATAT
TTATCGAGGGCTTCTACAAGCTAAGAATTTTATAGTTTTTTAAATGTTTT
TATACATGTTTTATATAGTTTTTATAGTTGCTTGAAACTTTGAGTATCAA
GCAATTCTTATCTCAACTTCAATTTATTGTGTACATGTTTATATACAATA
TGGTGGTGTTCCACAAGGTTCTTTACTATACTAGGGAGGTTGACCATAGC
CAAAAGATCGGTTACGCAAATTTGGAGATAAACTTTTGTTTTGAGTTCCT
TGATACTTTTAACAAAAAATTGTCTTTATAAGTTGTTTCTGAATTGTCTG
AATTTATTCTATCAAGAGTAATTTAGCAATTAAATTACAAAAATATGACG
TTATGAACCTTAAAAAGACGTTAATAAAATATTATATTACCCTCTTTTAC
AAAAAATGCCAAGTTTTAATGGGTAATTAACCTTTTTGTTTTGAATTTTT
TTTTAATATTCTGCAAAAGATTGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014977-exon-sc0000201-1575043694:417934..417974 | TCONS_00014977-exon-sc0000201-1575043694:417934..417974 | Clytia hemisphaerica | exon |
| TCONS_00014977-exon-sc0000201-1575043694:413299..415131 | TCONS_00014977-exon-sc0000201-1575043694:413299..415131 | Clytia hemisphaerica | exon |
| TCONS_00014977-exon-sc0000201-1510915933:417934..417974 | TCONS_00014977-exon-sc0000201-1510915933:417934..417974 | Clytia hemisphaerica | exon |
| TCONS_00014977-exon-sc0000201-1510915933:413299..415131 | TCONS_00014977-exon-sc0000201-1510915933:413299..415131 | Clytia hemisphaerica | exon |
| TCONS_00014977-exon-sc0000201-1491911889:417934..417974 | TCONS_00014977-exon-sc0000201-1491911889:417934..417974 | Clytia hemisphaerica | exon |
| TCONS_00014977-exon-sc0000201-1491911889:413299..415131 | TCONS_00014977-exon-sc0000201-1491911889:413299..415131 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000201 | supercontig | sc0000201:413299..417974 - |
Blast
BLAST of TCONS_00014977 vs. Swiss-Prot (Human)
Match: B3GT1 (Beta-1,3-galactosyltransferase 1 OS=Homo sapiens GN=B3GALT1 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.047e-19 Identity = 80/289 (27.68%), Postives = 135/289 (46.71%), Query Frame = 2
Query: 365 GNMKTSESFSQRSQQTQIKEPNVRLLNEEDLKPSSSQILFLVFSHIGNYERRTTIRRTWGNPDNFPKQRAMFKNATYKVLFITGFXXXXXXXXXXXXXXH--GDMLITNRTENYFDISRRTQFGIHWTIRNC-KFDYFFKTDDDVFVSIPN-TYKLFYQDAFAVEHKTSLYAGLMHMRGGPIRDKRSKWYIDKKLWGQTIYAPFATGMAIILSRNVAERIEPYFEWKNVFPLEDVNIGFYVFVAKVPNIGVRPSKGAEF-VLDYTVAVCSHYKRETITMHPVKNEACMR 1216
GN++T + S + I EPN + + ++ L+ + ++ R IR TWG+ +NF K LF+ G AD + E + D+++ + ++Y +++ +T G+ W C K Y KTD D+FV++ N YKL + + + + G + + GGPIRD RSKWY+ + L+ + Y PF +G I S +VAE I + LEDV +G + +G+ P + + F ++C + R IT+H + E R
Sbjct: 51 GNIRT-RPINPHSFEFLINEPN-------KCEKNIPFLVILISTTHKEFDARQAIRETWGDENNF-------KGIKIATLFLLGKNADPVLNQMVEQESQIFHDIIVEDFIDSYHNLTLKTLMGMRWVATFCSKAKYVMKTDSDIFVNMDNLIYKLLKP---STKPRRRYFTGYV-INGGPIRDVRSKWYMPRDLYPDSNYPPFCSGTGYIFSADVAELIYKTSLHTRLLHLEDVYVGLC-----LRKLGIHPFQNSGFNHWKMAYSLCRY--RRVITVHQISPEEMHR 313
The following BLAST results are available for this feature:
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