TCONS_00014968 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014968
Unique NameTCONS_00014968
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1023

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014968 ID=TCONS_00014968|Name=TCONS_00014968|organism=Clytia hemisphaerica|type=transcript|length=1023bp
TTCAGACCTCGAGGGACGAGACAGATTGGTCATATTATCAAGCATTCCAC
ATGTTTTTGGGTTAACCTTATTCAAAGACGATCTTTATTGGACTGATTGG
ACAGAAAGATGGGTGGCACTTGCCAATAAAAACGGGCAAGATCCTCAAGT
TGTATTGGTTGATAACCTTGATCAAAACCCCATGGCCATCAAAGTTTTTG
CTAAACGCAATGGAACTTGTTGGAGTCAATGGAGCGTGTGGTCAGATTGT
GATCGACCGTGTGGTGTTGGCTTTCACAAGAGATCAAGAATGTGTTACAA
TACTGCTTCAGATACTGAATGTATTGGCAACGATGTGGAATTGTTGAAAT
GTAATGAGCACCTCTGTCCAGACATATGCAATGCTACACAGAAAGCATGT
AGCTGTTCGAACGTTCCAGTGATATACGATATGACCAAATTGCAAACCAA
TGACACTTTCTATGGGATCAATGAAACGGCTGTGAATAACTCGCTCGCTA
CAATTGCAAAGTGGAATGCACAAGAAATCACTTTGCTTTGTAAAGCTCGA
TGCAGAGAGAGTGACCTTGAAGCAACAATTAATGAACTACAAGTTGAAGA
AGACACGGTTCAAACATCTCTAAATACTGTTATGGATTCACAAATCCTCA
TTCGTAAGATGATCGATTGTCACGCCAATGTTTGGTcaagaaaaggaaaa
ttatttgatCATTATGAACAGCTTTGTCAACGCAAAGTGATCATTCAACA
AGTTTTGAgtgatttgaaaatcaaaaagataatcttggaaaatgaaaaga
agAGATGTGCTGATAGAAGTTGGCTACGAACTGTACTTGAAGAGACTTGG
CATCGTACCATTTCTTAGTCGAGGGAAGAATCTTTGAAGTGATTCACCTC
TAGTCTATTTTGTCTGGTCGACAATCAATTGAtggttttttaaatgaaat
tttgtgtaaTTCTATATTTCTAATTCAAGTAAATATTATCGTACAAAGAT
AACTTTTCCATTATCCTCAATAA
Run BLAST on NCBI

transcript from alignment at sc0000201:293016..295562-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014968 ID=TCONS_00014968|Name=TCONS_00014968|organism=Clytia hemisphaerica|type=transcript|length=2547bp|location=Sequence derived from alignment at sc0000201:293016..295562- (Clytia hemisphaerica)
TTCAGACCTCGAGGGACGAGACAGATTGGTCATATTATCAAGCATTCCAC
ATGTTTTTGGGTTAACCTTATTCAAAGACGATCTTTATTGGACTGATTGG
ACAGAAAGATGGGTGGCACTTGCCAATAAAAACGGGCAAGATCCTCAAGT
TGTATTGGTTGATAACCTTGATCAAAACCCCATGGCCATCAAAGTTTTTG
CTAAACGCAATGGTAAACTTATTATTAAGTCAAAAAATTAAACGTGATCA
AAATTGACTGACAGTTGGAAATATTTTCCCATCGATAGAACATGGTTCGT
TATTGATATTTGACTTGTGGGGCCTGGTTAAGATTTTCGTCGAGAAGACG
TTAAAATTTGATTCTTTCTATTTAATGATAAAAAAAGCTTTTAATGGGTT
TTTAATGAATAAATCACTCAGAGCTAGAATCAACATCATATATTACCTCA
TTTTGCAGGAACTTGTTGGAGTCAATGGAGCGTGTGGTCAGATTGTGATC
GACCGTGTGGTGTTGGCTTTCACAAGAGATCAAGAATGTGTTACAATACT
GCTTCAGATACTGAATGTATTGGCAACGATGTGGAATTGTTGAAATGTAA
TGAGCACCTCTGTCCAGGTTAGTTATTTTCTCTGCTTACAAATTCGTGAT
GTCTGGACATTCCTTCCTGAGTCCCTAATTATCGTAGTCGAAAAACTTCT
TATTCAGTCAGAATTTTAGTTTATTTACAGGTCTATTTTCGAAGGTATTT
TCCAAGTCTTTTTTCTTTCGGTTCAGTCAGTAAAAGGTTTGAGCGAAAAT
TAGCTTAAGGTATCCTGAAGTTTGTTGTTACCTAAAATGGAACGGGTTGT
AAATATCTCGAACATCCAGAACCTACATCAAACTTAGGAATTATTCTTTC
CACGACCTCGATTGTCATAGGTCAGCTAGCCACGTGATGGGTGGGGCACC
ACACAAAAATTCTCCACTCGGAGGTGCTCGAGCTACCACACGACTACGCC
TATCTTAGACTCTAAAACACCCGATCTGATAGAAAAATGAGCAAAAATGC
CCAGAAAATGTTAGAAATAAGAACATGTCAAGAACCTTTCTAGGCTTAAA
ACTCAAAAAAAATAAGAACATCCAAAGGCTTCAAAAATTAAGAAAAAACG
TGTTGTCCCTACTCGTTAAATACCAACACTATAACAATTATAAGATTCAC
TTTTCTATCTTCAGACATATGCAATGCTACACAGAAAGCATGTAGCTGTT
CGAACGTTCCAGTGATATACGATATGACCAAATTGCAAACCAATGACACT
TTCTATGGGATCAATGAAACGGCTGTGAATAACTCGCTCGCTACAATTGC
AAAGTGGAATGCACAAGAAATCACTTTGCTTTGTAAAGGTTGGTCTCTTA
AAAACCTCTTTTACTGACTGGCCTAAAACAACTTTTGAAATAATCAAGGG
TTCCTATAACACTCCTCTCGAAATACATGAAATCATGACATTGCGGGCTT
CAATTGCCAATCGAATAGAATTTTTAAGACAGTTGATATGCATTCCCAAA
AGACCATCCATCCATTATATTATTTTGGGACAAATGTGAGGACCGGAAGA
AGAGTGTCTTTACATTTATTTCCNGGGGGCAAATGCGAGCACCGGAAAAT
ATCTCGTGAAGAGTGTCTTTTCATTTATTTTTCTAATTTTAGAAGCTCGA
TGCAGAGAGAGTGACCTTGAAGCAACAATTAATGAACTACAAGTTGAAGA
AGACACGGTTCAAACATCTCTAAATACTGTTATGGATTCACAAATCCTCA
TTCGTAAGATGATCGATTGTCACGCCAATGTTTGGTCAAGAAAAGGAAAA
TTATTTGATCATTATGAACAGCTTTGTCAACGCAAAGTGATCATTCAACA
AGTTTTGAGTGATTTGAAAATCAAAAAGATAATCTTGGAAAATGAAAAGA
AGAGATGTGCTGATAGAAGTGAGTGTTTATCATGTTACTCCATGCGATTC
TTCATTCTCTTGTACTTTTTATCGGAGTTTTTAATTCCTCAAAATAATTA
GTTTCATTTCATTGTTACAGCTACGATATACGAGGGTCTTGGTTCTATGG
ATACACCTTTTCGACCGTGGTCGCGCGGTCAGGCGCGTGCCACTTTTATC
CCACTAAGCTCAATCCATTTTCAACACATTTTCTATTGTCTATAGGTCCG
AAAAAAGGACTAGAACGATTTTAGTGGGATAAAGCGGACAAAAAAATTAC
CGCGCGACAATTGGCGGCTACGGTCGAAAAGGTGTATTGGAAAAGGACCT
TAGTATTTCGAAACTAAACTTGTTGCAATCATCTTTTCATAGGTTGGCTA
CGAACTGTACTTGAAGAGACTTGGCATCGTACCATTTCTTAGTCGAGGGA
AGAATCTTTGAAGTGATTCACCTCTAGTCTATTTTGTCTGGTCGACAATC
AATTGATGGTTTTTTAAATGAAATTTTGTGTAATTCTATATTTCTAATTC
AAGTAAATATTATCGTACAAAGATAACTTTTCCATTATCCTCAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008368XLOC_008368Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014968-exon-sc0000201-1575043694:295351..295562TCONS_00014968-exon-sc0000201-1575043694:295351..295562Clytia hemisphaericaexon
TCONS_00014968-exon-sc0000201-1575043694:294946..295104TCONS_00014968-exon-sc0000201-1575043694:294946..295104Clytia hemisphaericaexon
TCONS_00014968-exon-sc0000201-1575043694:294175..294348TCONS_00014968-exon-sc0000201-1575043694:294175..294348Clytia hemisphaericaexon
TCONS_00014968-exon-sc0000201-1575043694:293595..293867TCONS_00014968-exon-sc0000201-1575043694:293595..293867Clytia hemisphaericaexon
TCONS_00014968-exon-sc0000201-1575043694:293016..293220TCONS_00014968-exon-sc0000201-1575043694:293016..293220Clytia hemisphaericaexon
TCONS_00014968-exon-sc0000201-1510915933:295351..295562TCONS_00014968-exon-sc0000201-1510915933:295351..295562Clytia hemisphaericaexon
TCONS_00014968-exon-sc0000201-1510915933:294946..295104TCONS_00014968-exon-sc0000201-1510915933:294946..295104Clytia hemisphaericaexon
TCONS_00014968-exon-sc0000201-1510915933:294175..294348TCONS_00014968-exon-sc0000201-1510915933:294175..294348Clytia hemisphaericaexon
TCONS_00014968-exon-sc0000201-1510915933:293595..293867TCONS_00014968-exon-sc0000201-1510915933:293595..293867Clytia hemisphaericaexon
TCONS_00014968-exon-sc0000201-1510915933:293016..293220TCONS_00014968-exon-sc0000201-1510915933:293016..293220Clytia hemisphaericaexon
TCONS_00014968-exon-sc0000201-1491911889:295351..295562TCONS_00014968-exon-sc0000201-1491911889:295351..295562Clytia hemisphaericaexon
TCONS_00014968-exon-sc0000201-1491911889:294946..295104TCONS_00014968-exon-sc0000201-1491911889:294946..295104Clytia hemisphaericaexon
TCONS_00014968-exon-sc0000201-1491911889:294175..294348TCONS_00014968-exon-sc0000201-1491911889:294175..294348Clytia hemisphaericaexon
TCONS_00014968-exon-sc0000201-1491911889:293595..293867TCONS_00014968-exon-sc0000201-1491911889:293595..293867Clytia hemisphaericaexon
TCONS_00014968-exon-sc0000201-1491911889:293016..293220TCONS_00014968-exon-sc0000201-1491911889:293016..293220Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000201supercontigsc0000201:293016..295562 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.182385	0.116864	0.0526718	0	0	0.10981	0	0	0	0.268579	0	0.101276	0	1.13131	0	0	0	0.250722	0.251991	0.530717	0.316381	0.0637052	0.436146	0.370393	0.0419216	0.158488	0	0.192819	0.249785	0.201668
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014968 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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