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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014966 ID=TCONS_00014966|Name=TCONS_00014966|organism=Clytia hemisphaerica|type=transcript|length=2278bp
ttgaaatcacattaagaatttttttcctcTACTCCACTTGTAATGGTCGG
TGAATTCTTTGATGAAATAAGTGAGTGTTGTAAATGCTAGTTTTGTGAGC
AAAGATGGCGGTAGAAGGAAGGAGACGTCTTGGTAAatatggaatcaatg
gtgttgagAATTCACCAgaacattttcatttcatttggaAGACAAGTGAC
ATAAGGAAATCAATAGTAATGGAATCAAGGTGTTCATCTTCCTCAACGGA
AACTTCAGGAGGCTTCTTCAACTGGCGTGAAAACCGACAACGTCTTTTCA
TCTATTGGTGCTTCACTCATTTCATACACGGCATGATCCATTCCATCCGC
TACTCCTCACAATACCTCTATTTCAAAGACGTTCTTCAAGTTTCAAACCC
AGACTTTTTATACGGTCTATCCGTATCATTCATCGGTGCGACCGGTGTTA
TATTTCCGCTGTTGATCAGTCCGTATATTGATAAAACGCGGAACATCAAG
CAAGCAGTAATAACGGTCAATGTGTTAGGGTTGATTGGTAATCTGTTGTA
CGCGTTACCTTTTTCACCAGCTTTCCCACTAATTGGACAATTACTTGCCG
GAACAACGCCGGCTTTCGGTGTGATTGCAATGGGAGAAATCTCACGGTGC
TACTCCAGTGagaaaatcacgaaaaaagTTTCGGGACTCTCGTTGATTTA
CAGCATTGGAACTTTCACCAGCATTGGTTTggtgttttgttttttatacg
TCGACTTCGATATCGGTGCATGGAACATCAATTTTGCGAACATGCCAGGA
TTGTTCCTTGCGTTGGCGTTCGCTGTTTCAACAGTACTCGCATGTTTCTT
AGTGTCTGACGTCTCCAAGGAATTCGACATGAAGCTTGAGGAACGCATCA
AACGATCATCTTGTGGCTCTACGCCCAACCGCCTATCATCCACCATCACA
ACGCCCGATTTGAGTTCCAATCGAAGTTCACCTAACCTTCAAACGAACGA
CGCGTCATCCAGTTTGAACACTTCAAATCTGCAGATCAGTTTGAACAAAC
AAATCCCTCTTATTATCGAACCCACTGATGAAGATTTGAATCTGTCAGAA
GAAGAGCGTCGTTTTAAGGTCATTCGTGAAGTGGGCGAGCCTTTCTTCTT
CAACATAAATGCTGACGATGCAGATAATGCAGAGGGCGAGGAACAGCCGA
AGAGTAGATCCACCTCTGCCCCTTTCTCATTCCCGCGAATTAAGAAGAAT
GGGTACGAACGACTGACCACTTCTGACCCTGATGACACGGAAAGCTCATC
TTCTTTCTCTGCAAGAAACAAACTTGCTGACACATCAAAATGTGAAACAG
TTCGTATTACGTTGGAGtctatttggaaaattttacgTTTCAAAACCACC
GCCATTTTGATGGGCGTCACATTCATGGAGGCGTTTGTGTATAGTATCAT
TGTGACGTCATTACCTGTCCTTGCTACGAAATTCTTAGGTTGGGGGAAAT
TGGAATTGGCTTTACTGAGTATGGTCAATAAATTTCTGTCGGTCATCATC
TCAGGGTCAGTGTACTTTCTAACAGACTATTTACACGACTACCTTTTATT
GTGTTATGGTATCGGACTTTCTATTCTTGCTTTATTGACATTATCAGTAT
TGCAATTGATAGACACTAACACGACGGCTTTGATCGCATTAATGTTCGCA
GTGGCCACTCTCTCCATCTCAGGAGTGCCTCTCATCATCACATCAACCCG
ATCCATGCTTGCCAAGATGGTCCCTACTGAAATCCAATCATTGACAGAAG
CCGTCAGGATGTCGATTTTTGAAGCTTCCTTTGTACCAGCTGGCTTCTTG
GTGCCCTTAGTGACTTTAAATGTAACGGCAACGGCCCTCATTTTGTTGCT
ATTGATGGCAAGTATGCTGATGATCGCTTTAAGACACATGAGGATTCTAG
TTGAACTAAAAGAGGACGATGCTTATTGGAGTGATGGCAAAGAGACTCCT
TCAAACGCTAGTAGTAGTGGTGAACCATAACTGACGGATTCTAAACTATT
ATTAAAAAATGGCCAACCCCTAGGATCCGTATTGAATCTTTTGTGATTGG
CTTAAAAGTAGAAAAATATTTAGTAGCTTTTTTGAAAGGTGCCCGCTAAA
TAAGCCTGGTAAAAGTTTTTATCCATTATGCCGTTACATACAAAATATGC
TATCTATAtatgtttttaattgattttatttttattttttgtgttttttc
tcagaaatcaaATGCAGGCTCATTTGGT Run BLAST on NCBI transcript from alignment at sc0000201:275112..280411- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014966 ID=TCONS_00014966|Name=TCONS_00014966|organism=Clytia hemisphaerica|type=transcript|length=5300bp|location=Sequence derived from alignment at sc0000201:275112..280411- (Clytia hemisphaerica)
TTGAAATCACATTAAGAATTTTTTTCCTCTACTCCACTTGTAATGGTCGG
TGAATTCTTTGATGAAATAAGTGAGTGTTGTAAATGCTAGTTTTGTGAGC
AAAGATGGCGGTAGAAGGAAGGAGACGTCTTGGTAAATATGGAATCAATG
GTGTTGAGAATTCACCAGAACATTTTCATTTCATTTGGAAGGTCAGTTTT
TTTGCTTCTTTTTGAACGTTTATCATTCAAATGCGTCAATCTTGTTTCAC
GTGAATGTAGTTTAGGTGTGGGGTAAATCCCTCTGCAAAATATTATTTCT
TGTTCAAATGAAACATGTGGCCAAAAAAACGTGCCTTAAGGAGAGAAGCT
AAAATACTCGTCCTTGTTAGGTAACGTTTTTGAGAAGGAAAACCTCATGT
TTCTAGCATAGCGTAGTTAGAAGATTAAATTTCAGCAAAAAATATATATT
TTCGTATTATAGACGATAAGTTAACTTCAATCGAAAATGATACACCATGT
GCATGGGGTCTGGACACGAGTTATGCATTATGACATAGTTTTGAAATTTT
CCTCACGTCTCTCGTTATATTTTTGTAACGAAATTCCGTCTTGTAAAGTC
CTTCTCGTCGTGTTTTGTCCGTGCGTAAACAAATGGTTCCTCTGATATTG
AGTTAAAGTTGTTGATGGCCAACGAGAGATTCTTATTTTGTGTACTTAAC
AAACTGTCGTGAAACCGAAGAGCTTATCCTTCTCTTCAAAGAAACAGAAT
AGCTGAAGTGTCTTGACATATTCAAGAATTTAATTTACGTATTTTTGGTA
AAAACACTTTAAACTTTTTTTAGCTTGGATGGGTTAAGTCTTCCATAGTT
ACTAAGAAGCTAAAAGACCGAATGAAATTATGGAATTAAAAAATGGAAAC
TTCCTTGGATAGCCAGACATTGTTTCATTACGGTAAAGGACAAAGTGTAA
TGGAGTGACATACAGACTCTCGCTTATTCGACCTTCCATTACTTGAATAA
TTCTATAATTCGAACTCGTCAAGGAGAAACCCTCCGGAAATATTTTCTAT
AAATCGAATTTCGCTGTAATTCGAACAAATAAGTTTTTCCGTCCGAATTC
GAATTAGGGAGAGTCAATTGTATTAATACATAAGGATAAGCGCAACACCT
TCCTTTTAAAGCTTTACACCTCGTGTTGCACCACTAGTTTACCTTACTCC
TTGTTATACGTTCATCCTGAAAAAAGTTGTTGCATTAGGATTAACGCTAA
GAAAAACAAACAAATTAAACAGAGAACTTTCGTTGAAGCTCATATCTATT
GACCTGTGAAAAATATGACGCGTTGTGTGAGTGTCGCTTATAGACGGTTT
GTTGACAAATCTTTATGAGTTTGATGATTTGAGTACTCTGTGTTTACATG
ACAGTGGTTATGAGGTGCTTCAATAAATCCCTGAAAACGTGGAGAGGGCT
TTCAAGAGAACGTAGTTAAGTTAGTGAGGGCTCTTTGATTTAGTGCTTGT
GTTTTTGAGAAAATGTCGGAGAAGTTTCTCAATATTATTCGGTGAAGTAA
GTCACCGGGTTTGCAGATGGAATAGGAATGGTTGTAGTTTTTTATCTCTA
CCGTAATTGTTATCTCTGAATAACTTATTTGTAAAAGAGCAAGACCCACA
TAGAGTAAGATCTGATCAGGGCGCTTTTCAAACGTTTTTAGGCAAGGTTT
ATCAAAAAATGAATAGTTCGATTAGGGTACTGATTATTTACCACACTGAG
TAGGGAGTGACTGATGTCATCTCCTTATCTAAAAATTGAAATTTTAGATA
TTTTTGAATTTCTTTTCGAGAAATCATATCTTTCATTTAGTTTAGAATTA
CATTGGTAATTGGTAATGTTACATTTTCATGAAAATAACTTTTCTCACCA
TTATCTTGTTGAAATCTTTGTACGCGAGTTATTAATGAACTTTTGAGAAA
TTGAGGAGTATATTTGGTGTCAGGTTTACACGGATGCACACAGATGTTTA
TGATTAGAGAGCCTGTGTAGTGAGTAAAAAGAGACGACGGAACGCTCAAC
TTCAAAGCACCGTCAACCTTCTGACATCTTCACTTTAATATTTTACATGG
CTTTCAAAATTTAATCGGAAATTTGTAATGAGAATAAAAGATTTTCATTA
CTCCTTTTAATTCCTTTGCATCAGAATAAGTTTATCAGTTAAATAAGTTT
AGGTGAAAGAGAGGACTGATATTGGATTCTCTTTGACATGCGCAGTGTGT
TGACGCATATAAAGAGTGGAGGTCTGCGCATTCACTGACAGCTTACATCA
TTTCCACCCCAAAGAAAAATCATCACTTTCAAAAACAGTTTGTTGTATAT
AAGAGGTGCTTCTTTCGTGACTTGCATGTCGAGGGATCAACTTGTGAAAG
TATTTACATCTGTTGATAATATTTTGTTTGTTAGTTCTTAACAGTCAGGA
CTAAGACTTTGAAAGGATAATAAACTTTAGAAATTTTACGAAATATTTAT
TTTTGCTTTCACTATATTCCAATATTTGAATAAATTATTTTCAAAATTCA
AGTCGATGATCCTAAGTGTTCTGATTTCTCAAGCATGTTTGAAGTTGATT
TTTTCTAACTTAAAGCTTACTTTTGATCTATGGCTGAAAGTAATGTTGAT
CAAGATTGTTCTAAGTGTAACAAGCTTCTCACTCACTGTACCAATATGAC
GATAGTTTTCTTCCTCCAATGACGACTTTAACGAATGAGAAGGAAATTCC
TTAAAAGGTGAAAGGAAGTGTTTGATAATCAAATGCCGATACTTTTGTAC
CGTCATTGAAAAGATGGATGAGGTGTGAAAGAGGTGTCTTAATCACTCTG
TTTCCAATCATCACTCTCTAAGTCATTCTGTCTTTCGGTGTCTGATGTTG
GCTGTGTGTGAAGATTTACGCGCTCTTTTGAGTGATTTAAGGACTTTAAG
AACTTTATGAGAAATGTTTGGCTTGTAGTTTAACATTTTGATATTTGCGT
AACGTTCCTGAATCTTGTTATAGACTTGTGTTATGCATAAAATTATTCAA
AGCTCAATCAAAGAAACTCTATGCACCCTAGAGGTTTTCAAAATTTTGGA
TGAGAATCTGTAATATAAAATAAGTAACTCGTCTATTTCCTCTATCTCTT
GAACCATGATATATCGATAAAGAATCGTTTTGCCAATAAATATTCCTTTT
TCTTTCGTTTCAGACAAGTGACATAAGGAAATCAATAGTAATGGAATCAA
GGTGTTCATCTTCCTCAACGGAAACTTCAGGAGGCTTCTTCAACTGGCGT
GAAAACCGACAACGTCTTTTCATCTATTGGTGCTTCACTCATTTCATACA
CGGCATGATCCATTCCATCCGCTACTCCTCACAATACCTCTATTTCAAAG
ACGTTCTTCAAGTTTCAAACCCAGACTTTTTATACGGTCTATCCGTATCA
TTCATCGGTGCGACCGGTGTTATATTTCCGCTGTTGATCAGTCCGTATAT
TGATAAAACGCGGAACATCAAGCAAGCAGTAATAACGGTCAATGTGTTAG
GGTTGATTGGTAATCTGTTGTACGCGTTACCTTTTTCACCAGCTTTCCCA
CTAATTGGACAATTACTTGCCGGAACAACGCCGGCTTTCGGTGTGATTGC
AATGGGAGAAATCTCACGGTGCTACTCCAGTGAGAAAATCACGAAAAAAG
TTTCGGGACTCTCGTTGATTTACAGCATTGGAACTTTCACCAGCATTGGT
TTGGTGTTTTGTTTTTTATACGTCGACTTCGATATCGGTGCATGGAACAT
CAATTTTGCGAACATGCCAGGATTGTTCCTTGCGTTGGCGTTCGCTGTTT
CAACAGTACTCGCATGTTTCTTAGTGTCTGACGTCTCCAAGGAATTCGAC
ATGAAGCTTGAGGAACGCATCAAACGATCATCTTGTGGCTCTACGCCCAA
CCGCCTATCATCCACCATCACAACGCCCGATTTGAGTTCCAATCGAAGTT
CACCTAACCTTCAAACGAACGACGCGTCATCCAGTTTGAACACTTCAAAT
CTGCAGATCAGTTTGAACAAACAAATCCCTCTTATTATCGAACCCACTGA
TGAAGATTTGAATCTGTCAGAAGAAGAGCGTCGTTTTAAGGTCATTCGTG
AAGTGGGCGAGCCTTTCTTCTTCAACATAAATGCTGACGATGCAGATAAT
GCAGAGGGCGAGGAACAGCCGAAGAGTAGATCCACCTCTGCCCCTTTCTC
ATTCCCGCGAATTAAGAAGAATGGGTACGAACGACTGACCACTTCTGACC
CTGATGACACGGAAAGCTCATCTTCTTTCTCTGCAAGAAACAAACTTGCT
GACACATCAAAATGTGAAACAGTTCGTATTACGTTGGAGTCTATTTGGAA
AATTTTACGTTTCAAAACCACCGCCATTTTGATGGGCGTCACATTCATGG
AGGCGTTTGTGTATAGTATCATTGTGACGTCATTACCTGTCCTTGCTACG
AAATTCTTAGGTTGGGGGAAATTGGAATTGGCTTTACTGAGTATGGTCAA
TAAATTTCTGTCGGTCATCATCTCAGGGTCAGTGTACTTTCTAACAGACT
ATTTACACGACTACCTTTTATTGTGTTATGGTATCGGACTTTCTATTCTT
GCTTTATTGACATTATCAGTATTGCAATTGATAGACACTAACACGACGGC
TTTGATCGCATTAATGTTCGCAGTGGCCACTCTCTCCATCTCAGGAGTGC
CTCTCATCATCACATCAACCCGATCCATGCTTGCCAAGATGGTCCCTACT
GAAATCCAATCATTGACAGAAGCCGTCAGGATGTCGATTTTTGAAGCTTC
CTTTGTACCAGCTGGCTTCTTGGTGCCCTTAGTGACTTTAAATGTAACGG
CAACGGCCCTCATTTTGTTGCTATTGATGGCAAGTATGCTGATGATCGCT
TTAAGACACATGAGGATTCTAGTTGAACTAAAAGAGGACGATGCTTATTG
GAGTGATGGCAAAGAGACTCCTTCAAACGCTAGTAGTAGTGGTGAACCAT
AACTGACGGATTCTAAACTATTATTAAAAAATGGCCAACCCCTAGGATCC
GTATTGAATCTTTTGTGATTGGCTTAAAAGTAGAAAAATATTTAGTAGCT
TTTTTGAAAGGTGCCCGCTAAATAAGCCTGGTAAAAGTTTTTATCCATTA
TGCCGTTACATACAAAATATGCTATCTATATATGTTTTTAATTGATTTTA
TTTTTATTTTTTGTGTTTTTTCTCAGAAATCAAATGCAGGCTCATTTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014966-exon-sc0000201-1575043694:280221..280411 | TCONS_00014966-exon-sc0000201-1575043694:280221..280411 | Clytia hemisphaerica | exon |
| TCONS_00014966-exon-sc0000201-1575043694:275112..277198 | TCONS_00014966-exon-sc0000201-1575043694:275112..277198 | Clytia hemisphaerica | exon |
| TCONS_00014966-exon-sc0000201-1510915933:280221..280411 | TCONS_00014966-exon-sc0000201-1510915933:280221..280411 | Clytia hemisphaerica | exon |
| TCONS_00014966-exon-sc0000201-1510915933:275112..277198 | TCONS_00014966-exon-sc0000201-1510915933:275112..277198 | Clytia hemisphaerica | exon |
| TCONS_00014966-exon-sc0000201-1491911889:280221..280411 | TCONS_00014966-exon-sc0000201-1491911889:280221..280411 | Clytia hemisphaerica | exon |
| TCONS_00014966-exon-sc0000201-1491911889:275112..277198 | TCONS_00014966-exon-sc0000201-1491911889:275112..277198 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000201 | supercontig | sc0000201:275112..280411 - |
Blast
The following BLAST results are available for this feature:
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