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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014959 ID=TCONS_00014959|Name=TCONS_00014959|organism=Clytia hemisphaerica|type=transcript|length=3353bpRun BLAST on NCBI protein sequence of TCONS_00014959-protein >TCONS_00014959-protein ID=TCONS_00014959-protein|Name=TCONS_00014959-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1044bp WTPEHHNESIITNMAERKGSGKSHKSRNGSAKSLTDTVSKLTVRALQSLNRun BLAST on NCBI transcript from alignment at sc0000201:101727..121722- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014959 ID=TCONS_00014959|Name=TCONS_00014959|organism=Clytia hemisphaerica|type=transcript|length=19996bp|location=Sequence derived from alignment at sc0000201:101727..121722- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000201:101727..121722- >TCONS_00014959 ID=TCONS_00014959|Name=TCONS_00014959|organism=Clytia hemisphaerica|type=CDS|length=56430bp|location=Sequence derived from alignment at sc0000201:101727..121722- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00014959 vs. Swiss-Prot (Human)
Match: CCD40 (Coiled-coil domain-containing protein 40 OS=Homo sapiens GN=CCDC40 PE=2 SV=2) HSP 1 Score: 519.235 bits (1336), Expect = 7.210e-164 Identity = 316/862 (36.66%), Postives = 544/862 (63.11%), Query Frame = 2
Query: 491 LVVLDPDHPLMKRFQNAYKDHLTKQDQKVSXXXXXXXXXXXSYMKQREEIGVELYGVQQELARQQLALDKLHDRYNEKTQVKLHWEMKLGETKTLHKQVQNDLTLQRKKANELQSEVEDIASKLLYMEAAKEDVRSDISVLKRAADKSDAEGMKAQIEKKRQDLLVNKLVTKVDRLRSDIAMYDAQIDAQKEEMKXXXXXXXXXXXXXXXXXXXKKQLLQQWNNSLIGMRRRDEAHSAIQEAVSMQSQQIQAIETELEGYKRQILKAQEQNEQLTYMSNRIESDITSVKKQVIICQNKHEAIKIEYSTYSRALNETESQLGRVQTDVNIRESELNNVRKLIEKEFLEKVKLEDQLLSKMQGQLTADKASQYTKKMREKIXXXXXXXXXXXXXXXXXISKDVLEIVNATTRVRALQDILNNINKVIYQKNETISKIENEIVKRNAVIEKKQGTIDQMNKRIDSMINKNGDDAYVGPLELQIKTLQRQIESTSGECLELQQYWLRQQSDLVKIIRSVNEQHSEIESKKKQSTIMMQKKLRIEGDVGSQKNEINDIERNIRSMQNDMTKLNVLIHRNRDKHQSLQQDNILMEHDFITALKDAELESVKIQTHIQGLNEEKERLLNAVVESERQILLWEKKTKLAREARDTVNSEVGQGEIHAMKAEIHRMEVRYAQLMRQQEKMMQDMEKSVFKRECIIVRGDALAKMERKKMGQPKMNAGTFHKKLSEMKKKIKQTNLEASQVEHEMKEVRDVQQELGTSLETKQSNTQRLQQSVDLQHDDIERMQELKQKNLADIISKQQRGKYYTSLKAGKYTRLCKTVDGLQNEREKQEDRLQNISTLVDRAVVDYPELQTAFRDMSLSIG 3076
LVVLDPDHPLM RFQ A K++L +Q +K+ L+L+EL QR+E+GV LY VQQ L Q L+K HDR+ + + E +L + L+ + +RKK LQ+E+E++A L YM+ +D+R DI V+ + K++ E ++A+IEKK+QDL V++L T+ +L DIA+++AQ AQ E+ + + ++EA TE++AI +EK++++QQW +SL+GM+ RDEAH A+ EA+ Q ++ + E+E YK+ I+K +E+NE+L + NR E++ T ++K C K A++ +++TY L +TE L + Q + I EL +R+ I+ E + K + + K+Q +T++K ++Y ++ +++++ T ++++ +I++ L+I + ++R+ A Q L +++ + + NE I+ ++EI +R +IE+KQG I+ +NK+++ M+++ G + VGPLEL+IK L + I+ G+ ++ Q WLR Q ++VK+ + EQ + +++ KK+ IM QKKLR+E + +K E +IE +++ + ND+ KLN+L+++NR + L+Q+N + E++F+ +LK +E E++K+Q + L+EEK LLN +VE+E QI+LWEKK +LA+E R +V+SE+GQ EI AMK EIHRM+VR QL++QQEKM++ ME +V +RE + + + KM+RK + + FH K E+++KI+ + + E+ + Q+ + +SL KQ +Q D D+ R+ LK++NL++I++ Q R K+ ++K G+Y L ++ L ER++ + RL I+T++DR +YP+ Q A +S I
Sbjct: 278 LVVLDPDHPLMVRFQAALKNYLNRQIEKLKLDLQELVVATKQSRAQRQELGVNLYEVQQHLVHLQKLLEKSHDRHAMASSERRQKEEELQAARALYTKTCAAANEERKKLAALQTEMENLALHLFYMQNIDQDMRDDIRVMTQVVKKAETERIRAEIEKKKQDLYVDQLTTRAQQLEEDIALFEAQYLAQAEDTRILRKAVSEACTEIDAISVEKRRIMQQWASSLVGMKHRDEAHRAVLEALRGCQHQAKSTDGEIEAYKKSIMKEEEKNEKLASILNRTETEATLLQKLTTQCLTKQVALQSQFNTYRLTLQDTEDALSQDQLEQMILTEELQAIRQAIQGELELRRKTDAAIREKLQEHMTSNKTTKYFNQLILRLQKEKTNMMTHLSKINGDIAQTTLDITHTSSRLDAHQKTLVELDQDVKKVNELITNSQSEISRRTILIERKQGLINFLNKQLERMVSELGGEE-VGPLELEIKRLSKLIDEHDGKAVQAQVTWLRLQQEMVKVTQEQEEQLASLDASKKELHIMEQKKLRVESKIEQEKKEQKEIEHHMKDLDNDLKKLNMLMNKNRCSSEELEQNNRVTENEFVRSLKASERETIKMQDKLNQLSEEKATLLNQLVEAEHQIMLWEKKIQLAKEMRSSVDSEIGQTEIRAMKGEIHRMKVRLGQLLKQQEKMIRAMELAVARRETVTTQAEGQRKMDRKALTRTD-----FHHKQLELRRKIRDVRKATDECTKTVLELEETQRNVSSSLLEKQEKLSVIQADFDTLEADLTRLGALKRQNLSEIVALQTRLKHLQAVKEGRYVFLFRSKQSLVLERQRLDKRLALIATILDRVRDEYPQFQEALHKVSQMIA 1133 The following BLAST results are available for this feature:
BLAST of TCONS_00014959 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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