TCONS_00014958 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014958
Unique NameTCONS_00014958
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1288

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014958 ID=TCONS_00014958|Name=TCONS_00014958|organism=Clytia hemisphaerica|type=transcript|length=1288bp
AAAAAACAAAGTACTATCATGATGCAAAAGAAGTTGCGGATCGAAGGTGA
TGTTGGCTCTCAGAAGAATGAGATCAATGATATTGAGCGCAACATTCGAA
GCATGCAGAACGACATGACCAAACTCAATGTTTTGATCCATCGAAATCGT
GACAAACATCAATCTCTACAACAAGACAATATATTGATGGAACACGATTT
TATTACTGCTCTCAAGGACGCAGAGCTGGAATCGGTGAAAATACAAACAC
ATATCCAAGGGttgaatgaagaaaaagaacGACTCCTGAATGCCGTTGTC
GAATCAGAGCGGCAGATCTTGTTATGGGAGAAGAAAACAAAGCTTGCTCG
TGAAGCGCGTGATACGGTCAATTCGGAAGTTGGTCAGGGTGAAATCCACG
CCATGAAGGCGGAAATCCATCGGATGGAAGTGCGTTATGCACAGTTGATG
CGACAACAAGAGAAAATGATGCAAGACATGGAGAAAAGTGTCTTCAAAAG
AGAATGCATCATTGTCAGGGGGGATGCGTTGGCCAAGATGGAGCGCAAGA
AAATGGGCCAGCCCAAAATGAATGCTGGAACCTTCCATAAGAAGTTGAGc
gagatgaaaaagaaaatcaaacagACAAACTTAGAGGCGAGCCAAGTTGA
ACACGAAATGAAAGAAGTACGAGACGTGCAGCAAGAGTTGGGCACCTCAT
TGGAGACGAAACAAAGCAACACACAACGTCTTCAACAATCAGTTGATTTA
CAACACGATGACATCGAACGTATGCAAGAACTCAAACAAAAGaaTCTGGC
AGATATTATCAGCAAACAACAACGTGGAAAGTATTACACGTCATTGAAAG
CTGGAAAGTACACAAGGTTGTGTAAGACTGTGGATGGTCTGCAAAATGAA
CGAGAGAAGCAAGAAGATCGGTTGCAAAATATCAGCACATTAGTGGATCG
TGCAGTGGTGGACTACCCCGAACTGCAAACCGCTTTCCGAGATATGTCGC
TTTCTATTGGTTATCGGGAGGAAGTGAACACTGAGAGAAGCTCTCTCCAT
CGCCAAGTAGATGTTGTTTAAACTTTTGATGTGTTGTTTCTATTTGTGAG
TGTGTATAGTAGGGCTGGGCCAGGTTCGTTTTATTTATtcttcagatttt
atgattttgaaatatttttttgactttaatttatgttttttatgaagaat
gtaaatatttttgatcgCTAATTcaaaagataaattttaaacTGATAAAT
AGTTTTTCTCAGTGCTTTCTTTGACATTTCAAGAGAAC
Run BLAST on NCBI

transcript from alignment at sc0000201:101727..107019-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014958 ID=TCONS_00014958|Name=TCONS_00014958|organism=Clytia hemisphaerica|type=transcript|length=5293bp|location=Sequence derived from alignment at sc0000201:101727..107019- (Clytia hemisphaerica)
AAAAAACAAAGTACTATCATGATGCAAAAGAAGTTGCGGATCGAAGGTAA
GCACACTCGTGGAGTATTTTGGCCTCTACTTGGTGTAATTTAAATTTTTA
AATCTATAAGTCACGGAATGTTGAAGAAGTTAAATGGTTTACTTATGTTC
ATTTGTACTATGTGTCCGAGACATTGAAAGAGTTGAGCTTCCTTTGTTTT
GAAAGGTTCAATGAAGGTTAAAGCAATCCTTCCAGGGGGTCTGAATTTTT
AAAACAGCAAATCACTTTCGAATTGACAGGTGATGTTGGCTCTCAGAAGA
ATGAGATCAATGATATTGAGCGCAACATTCGAAGCATGCAGAACGACATG
ACCAAACTCAATGTTTTGATCCATCGAAATCGTGACAAACATCAATCTCT
ACAACAAGACAATATATTGATGGAACACGATTTTATTACTGCTCTCAAGG
TAATACGCCATTGCAGTTTCAGCGCAATACTTCAAAGGAACTAATTTTAG
TGAATTTTGGAAAAATTTCTCCATAAATTAACTGTCGTCAAATTTTTTTA
TAATGTTCTGAAATAACCCCTATTTTTGTCCAAAACGCTGCGACCCGCGA
AATTCCATAGCTCACCAAAATTAGATTAACTCGCTGATAAAAGATAATAA
ATACGAGCATCAATCCTATGATTCTTTTCTCTCGCTCGTCAGGACGCAGA
GCTGGAATCGGTGAAAATACAAACACATATCCAAGGGTTGAATGAAGAAA
AAGAACGACTCCTGAATGCCGTTGTCGAATCAGAGTAAGTCTATTCATCA
AAAGAATTATACTATTAGTTACTGCAGAGGAATGTAAAGAGATTGGAAAA
CAGCTTTTCTGATTACTCAAAGTTCNAAGAATTATACTATTAGTTTCCGC
AGAGGAATGTAAAAAGATTGAAAAACAGCTTTTCTGATTACTCAAAGTTC
AACGATCACTTCTAATGAAAATTCTATTGTAAAAACGTTGATTAGGTTAT
TAAATAAAAGTGCAGAAAAGACGACTCGCCATACACATCGGACGGTTTCT
ACATGACGGTTTCTACTTCAAAAATTGTTCGATTTGGCTGAAATTTTGCA
CACTTGTTCCTTGGGTGAATATCTGGGGGCTTTTTTTTCATTTTTCAAAA
ATTTTGATTTTTGGGGCCTGGGGACAAGTTTTTCGCCAAAACGAGGCTAA
AACTTTAGAACAGCCTACAGGCCTCAAAAATGGTCGGATTTGGCTGAAAT
TTGGCACACTTGTTCATTGGGTGAACATCTGGCGGTCTGCAACTGGGCCT
ATGAATAATTTGAAGACACTGAAGTTGAGCCCAGTGCGTTGTGCACGTTC
GACTATTTTTAAAAATAAGGAGCAATTTTTATACCAATCTATAGCAAAAG
AAATTCTTAACGCAATGATATCAAATTGATTCTTGTAAAACTATCAGAAA
TCAAGTAAAACCAAGATGAAGTTATAATTTCCTCGAGCTCTAGCTTTCCA
TATAATGGTGCGGTCATGATGCCGTTATATTAGTAGAATTGCTAGGAAAT
TCTGAGTAAGAAGATATAGTTACCTTTTCGTATAGGAGAGGTGTACCCAA
AATATAAGCCCTAAAAGTTTGCATAATCAGGCTTGAAACAAAAGAATTTT
GTCACAACACGCTAGAGACCTGGTATATGGCGAGCCGTCTTTTCATTGTT
TTCAAGAAGCTGTTTTTCCATCTCTTTACATTCCTCTGGTTACTGAAAGA
ATTATTATGTGTTTCTTTGTAATATATTCTTCTTCTGAACTCAACTTTCG
ATCTATTTTTTGCCTGTGGCGAGTAAACGAAATCATTAGCCAATGCTTTT
CATAATTTGTAACCATTTGCTATTTTTCTTCTCCACAAGGCGGCAGATCT
TGTTATGGGAGAAGAAAACAAAGCTTGCTCGTGAAGCGCGTGATACGGTC
AATTCGGAAGTTGGTCAGGGTGAAATCCACGCCATGAAGGCGGAAATCCA
TCGGATGGAAGTGCGTTATGCACAGTTGATGCGACAACAAGAGAAAATGA
TGCAAGACATGGAGAAAAGTGTCTTCAAAAGAGAATGCATCATTGTCAGG
TTCGTACATAAGTGCCTACTCTCTTGTGCTTGTGCTTGCGCTTGCGCTTG
CTCCCTTATAAGTTTTTCTCTTGAAATTTTANTTACTCTCTTGTGCTTGC
GCTTGCTCCCTTATAAGTTTTTCTCTTGAAATTTTAATGATGGGATTGCG
ACCATGGTCATACATGTATGCTGATAGATGTAATCCCACAACACAGTTTG
CAATGAATAGTCCAATATGAATGTCGTGCACCAGCTTAAAGCTTTATTGG
AAGCAAATACTTTAATTATTTACAATCACCTTTTTAGGGGGGATGCGTTG
GCCAAGATGGAGCGCAAGAAAATGGGCCAGCCCAAAATGAATGCTGGAAC
CTTCCATAAGAAGTTGAGCGAGATGAAAAAGAAAATCAAACAGACAAACT
TAGAGGCGAGCCAAGTTGAACACGGTAAGACTTATTAGAAATATTTTTTT
GATTTCAATGAAAATACTCTCGTTTGTTGGTTTTCAGTAATTTTCTTTGT
AATACTTAAATAGGATTTAATTTCACGGATTCAATTTCTCGAACTAAAAA
GAGTTGAAAGTGGCAGGCCCTAAAACGCCAAAAAATAGNTTTTTGGTTTT
CAGTAAGTTCTTTGTAATACTTAAATCGGATTTAATTTCACGGATTCAAT
TTCTCGAACCATGGATTTATCATAGAACTCTGGATAAACATCAAATAAAA
CGGTGGAGAGCGAACTATTGTCTTTCCATTGTTTTAGAAAACAATTGATG
TTCTAGCTTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTAACGAATACATTTATGAAATTAAATGTGAAAAAAACTTCATCA
AACAAGAAAAATTGAGTAAAAAGCCTAGAATGACGCTGAAAATAAGGTTG
GCAATATCTATCTTTCCAATTTTTTCCTGGGAAGAGCTAGGATTGACATA
TGTTAGACTGGAGTATCTTGGCTTCATAGTGATATGAAAATCTTTTGGAA
GCACGCGGTGGCACGGTGGTTTTGGCGAGGTGGAAGTTTGAAATTTTCTG
GTGTCAACATTCAATTTCTTATACAAAGCATGTTTGTCGCATCTTTCTCA
CAGCTTGAAACGTCATAACGACATATCATTAGCAATCAATTTGATGCATT
TGACTCTCTTGAGAGATCTTTAAGTCTCATTTGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTGTGTTTTGATGAAAAAT
GCAATAACAAAATTTACGAAAGATTATTAGTGAATGGAGGAGGGTGAACA
ATAATGTGTCATTACTGCGGACAAGGCTAGAACATGAGAAATCGATGAAA
AACCAGCTCGTTGTGTATCCAGAATTCTATGATAAATCCATGCTCGAACT
AAAAAGAGTTGAAAGTGGGCCCTAAAACGCCAAAAAATAGCAAATGAAAG
TTTATTTTACGCCGACAATCTGATTTTGAAAATTTTGCGTGGATTTAATA
TCACGAATCAGTAAGCTCGCGTGATTTTTTTGCTAAAACAGAAAAAATTC
TTGAATCTTATTTGGATTGAAGGATTTTAAAGGATTTTAAAGGAAAACTT
TATCTTTCTTGTTTGTGTTAGAAATGAAAGAAGTACGAGACGTGCAGCAA
GAGTTGGGCACCTCATTGGAGACGAAACAAAGCAACACACAACGTCTTCA
ACAATCAGTTGATTTACAACACGATGACATCGAACGTATGCAAGAACTCA
AACAAAAGGTATACACTCAAAAGTTTCAGCGCAAAACTTCGTTTTGAAAA
GCTTCAAGTGGAAGCCGATACTCCAGTATACATTAAGTGAAAGGAGAAAA
AACTCGTTGACTAATGGAAGAAAGTTTGGCAGAATGGTTCTTGGAACTGC
TCGAATGCGAATCGTCCTTGAAGTTTGTCTTTGCTAAAGAAAAATCTCTT
TTGAGACTTTGGAGGGCAGTTAGGTAAAATATTTTATTGGAATTAAGTAT
GTAAACATCGTCTTGGAAAGTCAAACTCAAAAAGCATGAAATAGGGCAAA
AGTACTTTAATGAGTCCTTTGTGTCTTAAAAAAATTTCTTTTTGTAGAAT
CTGGCAGATATTATCAGCAAACAACAACGTGGAAAGTATTACACGTCATT
GAAAGCTGGAAAGTACACAAGGTTGTGTAAGACTGTGGATGGTCTGCAAA
ATGAACGAGAGAAGCAAGAAGATCGGTTGCAAAATATCAGCACATTAGTG
GATCGTGCAGTGGTGGACTACCCCGAACTGCAAACCGCTTTCCGAGATAT
GTCGCTTTCTATTGGTTATCGGGAGGAAGTGAACACTGAGAGAAGCTCTC
TCCATCGCCAAGTAGATGTTGTTTAAACTTTTGATGTGTTGTTTCTATTT
GTGAGTGTGTATAGTAGGGCTGGGCCAGGTTCGTTTTATTTATTCTTCAG
ATTTTATGATTTTGAAATATTTTTTTGACTTTAATTTATGTTTTTTATGA
AGAATGTAAATATTTTTGATCGCTAATTCAAAAGATAAATTTTAAACTGA
TAAATAGTTTTTCTCAGTGCTTTCTTTGACATTTCAAGAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008363XLOC_008363Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014958-exon-sc0000201-1575043694:106974..107019TCONS_00014958-exon-sc0000201-1575043694:106974..107019Clytia hemisphaericaexon
TCONS_00014958-exon-sc0000201-1575043694:106571..106740TCONS_00014958-exon-sc0000201-1575043694:106571..106740Clytia hemisphaericaexon
TCONS_00014958-exon-sc0000201-1575043694:106236..106327TCONS_00014958-exon-sc0000201-1575043694:106236..106327Clytia hemisphaericaexon
TCONS_00014958-exon-sc0000201-1575043694:104921..105130TCONS_00014958-exon-sc0000201-1575043694:104921..105130Clytia hemisphaericaexon
TCONS_00014958-exon-sc0000201-1575043694:104496..104632TCONS_00014958-exon-sc0000201-1575043694:104496..104632Clytia hemisphaericaexon
TCONS_00014958-exon-sc0000201-1575043694:102562..102698TCONS_00014958-exon-sc0000201-1575043694:102562..102698Clytia hemisphaericaexon
TCONS_00014958-exon-sc0000201-1575043694:101727..102222TCONS_00014958-exon-sc0000201-1575043694:101727..102222Clytia hemisphaericaexon
TCONS_00014958-exon-sc0000201-1510915933:106974..107019TCONS_00014958-exon-sc0000201-1510915933:106974..107019Clytia hemisphaericaexon
TCONS_00014958-exon-sc0000201-1510915933:106571..106740TCONS_00014958-exon-sc0000201-1510915933:106571..106740Clytia hemisphaericaexon
TCONS_00014958-exon-sc0000201-1510915933:106236..106327TCONS_00014958-exon-sc0000201-1510915933:106236..106327Clytia hemisphaericaexon
TCONS_00014958-exon-sc0000201-1510915933:104921..105130TCONS_00014958-exon-sc0000201-1510915933:104921..105130Clytia hemisphaericaexon
TCONS_00014958-exon-sc0000201-1510915933:104496..104632TCONS_00014958-exon-sc0000201-1510915933:104496..104632Clytia hemisphaericaexon
TCONS_00014958-exon-sc0000201-1510915933:102562..102698TCONS_00014958-exon-sc0000201-1510915933:102562..102698Clytia hemisphaericaexon
TCONS_00014958-exon-sc0000201-1510915933:101727..102222TCONS_00014958-exon-sc0000201-1510915933:101727..102222Clytia hemisphaericaexon
TCONS_00014958-exon-sc0000201-1491911889:106974..107019TCONS_00014958-exon-sc0000201-1491911889:106974..107019Clytia hemisphaericaexon
TCONS_00014958-exon-sc0000201-1491911889:106571..106740TCONS_00014958-exon-sc0000201-1491911889:106571..106740Clytia hemisphaericaexon
TCONS_00014958-exon-sc0000201-1491911889:106236..106327TCONS_00014958-exon-sc0000201-1491911889:106236..106327Clytia hemisphaericaexon
TCONS_00014958-exon-sc0000201-1491911889:104921..105130TCONS_00014958-exon-sc0000201-1491911889:104921..105130Clytia hemisphaericaexon
TCONS_00014958-exon-sc0000201-1491911889:104496..104632TCONS_00014958-exon-sc0000201-1491911889:104496..104632Clytia hemisphaericaexon
TCONS_00014958-exon-sc0000201-1491911889:102562..102698TCONS_00014958-exon-sc0000201-1491911889:102562..102698Clytia hemisphaericaexon
TCONS_00014958-exon-sc0000201-1491911889:101727..102222TCONS_00014958-exon-sc0000201-1491911889:101727..102222Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000201supercontigsc0000201:101727..107019 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.7875	8.68976	4.84804	8.3267	6.02278	0.00491139	3.6783	4.46002	1.76298	4.70577	3.14102	0.12764	1.30394	0.053918	0.530806	0.0941834	0.0179721	1.23323	1.4445	0.0377686	1.26946	0.439373	8.78222	1.50981	3.66298	3.32756	5.72229	9.29074	5.0381	5.69949
Blast
[Close]
BLAST of TCONS_00014958 vs. Swiss-Prot (Human)
Match: CCD40 (Coiled-coil domain-containing protein 40 OS=Homo sapiens GN=CCDC40 PE=2 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 4.580e-66
Identity = 130/337 (38.58%), Postives = 214/337 (63.50%), Query Frame = 1 
Query:    1 KKQSTIMMQKKLRIEGDVGSQKNEINDIERNIRSMQNDMTKLNVLIHRNRDKHQSLQQDNILMEHDFITALKDAELESVKIQTHIQGLNEEKERLLNAVVESERQILLWEKKTKLAREARDTVNSEVGQGEIHAMKAEIHRMEVRYAQLMRQQEKMMQDMEKSVFKRECIIVRGDALAKMERKKMGQPKMNAGTFHKKLSEMKKKIKQTNLEASQVEHEMKEVRDVQQELGTSLETKQSNTQRLQQSVDLQHDDIERMQELKQKNLADIISKQQRGKYYTSLKAGKYTRLCKTVDGLQNEREKQEDRLQNISTLVDRAVVDYPELQTAFRDMSLSIG 1011
            KK+  IM QKKLR+E  +  +K E  +IE +++ + ND+ KLN+L+++NR   + L+Q+N + E++F+ +LK +E E++K+Q  +  L+EEK  LLN +VE+E QI+LWEKK +LA+E R +V+SE+GQ EI AMK EIHRM+VR  QL++QQEKM++ ME +V +RE +  + +   KM+RK + +       FH K  E+++KI+       +    + E+ + Q+ + +SL  KQ     +Q   D    D+ R+  LK++NL++I++ Q R K+  ++K G+Y  L ++   L  ER++ + RL  I+T++DR   +YP+ Q A   +S  I 
Sbjct:  802 KKELHIMEQKKLRVESKIEQEKKEQKEIEHHMKDLDNDLKKLNMLMNKNRCSSEELEQNNRVTENEFVRSLKASERETIKMQDKLNQLSEEKATLLNQLVEAEHQIMLWEKKIQLAKEMRSSVDSEIGQTEIRAMKGEIHRMKVRLGQLLKQQEKMIRAMELAVARRETVTTQAEGQRKMDRKALTR-----TDFHHKQLELRRKIRDVRKATDECTKTVLELEETQRNVSSSLLEKQEKLSVIQADFDTLEADLTRLGALKRQNLSEIVALQTRLKHLQAVKEGRYVFLFRSKQSLVLERQRLDKRLALIATILDRVRDEYPQFQEALHKVSQMIA 1133
The following BLAST results are available for this feature:
BLAST of TCONS_00014958 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CCD404.580e-6638.58Coiled-coil domain-containing protein 40 OS=Homo s... [more]
back to top