|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014955 ID=TCONS_00014955|Name=TCONS_00014955|organism=Clytia hemisphaerica|type=transcript|length=1631bp
GGGAAATGTGTTAGGATTGAATCTGAAGCTTTACCAGGTTTTAAAGTACA
AAAATGGCTCATTTAATCAAAACCTCTGTTTTGGAGGTCGTCTCCGTTTt
aggggccgtctccgttttagGGGCCATCTCCGTTTTGGTGGCCGTTTCTG
TTTTAGTGGACGTCTCCGTGTTGGGGGCTGTCTCCGTTTTTGGGGCCGTC
TCCGTCTTGGGGGCCGTCTTTGTTTTTGGGGCCGTCTCTGTTTTGGGAAC
CATATACTGTAAGCTTTtttgcattaattttttcatGCAAGCTTCATTCT
TCACAGGGTGCATAGTAATAGTTCCACTTTTATAATGATCACAAATTGCC
ACAGTGTAATCCAGCACGAATTCTCTTCCTTTGGATGGCCTCACTCCAAT
ATTTGGTacttttgcaacaaaaacataGAAGCCAATATTGACATCTTCAA
GTGGGAAGACATTTTTCCATTCGAAATACGGTTCAATACGCTCAGCAACA
TTTCTCGATAATATGATAGCCATCCCAGTAGCAAATGGAGCGTATACTGT
TTGTCCCCATCTCTTTTTGTCAATATACCATTTAGATCTTTTGTCTCGAA
TTGGACCACCACGCATATGTATAAAACCAGCATATAAAGAAGTCTTGTGC
TCAACAGCAAAAGTATcttgataaaaaagtttgtaGGTATTTGGAATACT
TACAAAGACGTCATCATCAGTTTTAAAGAAATAGTCAAATTTGCAATTTC
TGATTGTCCAATGTATACCAAATTGTGTTCTTCGTGAAATATCGAAATAA
TTTTCAGTTCGGTTGGTAATCAACATGTCTCTGTGTGTTTTTGACTCtat
tttggcttttttaatCTTGTCCACTACAAAACCAGTTATGAAGAGCACTT
TGTATGTTGCATTCTTAAACATTGCTCTTTGTTTAGGAAAATGATCAGGA
TTTCCCCAAGTACGCCTGATGGTAGTACGCCTTACCACATTTCCAATATG
AGAGAAAACAAGGAATAAAATTTGACTGCTAGATGGTTTCAAATCTTCCT
CGTTTAGTAATCTAACGTCTGGCTCATTAACCTGAGATTGGTGTGAGGGC
TTGGGTGTGTTCAGTTTTGGGCTTTGGTTTTCGATCGTGCCAATCTTTTC
CTGTCTGACTTTGTTGCCGGATGAAATATTCAAAGACTTTGCAATTTGGT
CGAGTGACAGTGAATTCTTTCCCACCATTTCTCTTAATTCTTGGACATTA
TGAAGTTCTTCTTCGTGTATTATTTTGACATTATTTAAATCATTTGATTT
CATCTTTTCCTGTCTGATTTTGTTGCCGAATGAATCATTCAAAGATTTTG
CAATTTGATCGAGTGACAGTGAATTCTTTCCCACCATTTCTCTCAATTCT
TGGACATGACGAAGTTCTTCTTCGTGTATTATTTTGACATCATTTGATTG
GGTGTTAATTGGTGATtggattttgaatttaatgtgagaTCCATCCTTGT
AGTTAAACACACTCAAAAGTACAATAAGTCCAAGGACTAGGATGATTATC
AGTTTAGAGCTTTGTCCGCGAAACATTCGGTTAAAACTTTAACTAATGTT
tctacaaatattttttaatgtttgacacatt Run BLAST on NCBI transcript from alignment at sc0000201:458980..460610+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014955 ID=TCONS_00014955|Name=TCONS_00014955|organism=Clytia hemisphaerica|type=transcript|length=1631bp|location=Sequence derived from alignment at sc0000201:458980..460610+ (Clytia hemisphaerica)
GGGAAATGTGTTAGGATTGAATCTGAAGCTTTACCAGGTTTTAAAGTACA
AAAATGGCTCATTTAATCAAAACCTCTGTTTTGGAGGTCGTCTCCGTTTt
aggggccgtctccgttttagGGGCCATCTCCGTTTTGGTGGCCGTTTCTG
TTTTAGTGGACGTCTCCGTGTTGGGGGCTGTCTCCGTTTTTGGGGCCGTC
TCCGTCTTGGGGGCCGTCTTTGTTTTTGGGGCCGTCTCTGTTTTGGGAAC
CATATACTGTAAGCTTTtttgcattaattttttcatGCAAGCTTCATTCT
TCACAGGGTGCATAGTAATAGTTCCACTTTTATAATGATCACAAATTGCC
ACAGTGTAATCCAGCACGAATTCTCTTCCTTTGGATGGCCTCACTCCAAT
ATTTGGTacttttgcaacaaaaacataGAAGCCAATATTGACATCTTCAA
GTGGGAAGACATTTTTCCATTCGAAATACGGTTCAATACGCTCAGCAACA
TTTCTCGATAATATGATAGCCATCCCAGTAGCAAATGGAGCGTATACTGT
TTGTCCCCATCTCTTTTTGTCAATATACCATTTAGATCTTTTGTCTCGAA
TTGGACCACCACGCATATGTATAAAACCAGCATATAAAGAAGTCTTGTGC
TCAACAGCAAAAGTATcttgataaaaaagtttgtaGGTATTTGGAATACT
TACAAAGACGTCATCATCAGTTTTAAAGAAATAGTCAAATTTGCAATTTC
TGATTGTCCAATGTATACCAAATTGTGTTCTTCGTGAAATATCGAAATAA
TTTTCAGTTCGGTTGGTAATCAACATGTCTCTGTGTGTTTTTGACTCtat
tttggcttttttaatCTTGTCCACTACAAAACCAGTTATGAAGAGCACTT
TGTATGTTGCATTCTTAAACATTGCTCTTTGTTTAGGAAAATGATCAGGA
TTTCCCCAAGTACGCCTGATGGTAGTACGCCTTACCACATTTCCAATATG
AGAGAAAACAAGGAATAAAATTTGACTGCTAGATGGTTTCAAATCTTCCT
CGTTTAGTAATCTAACGTCTGGCTCATTAACCTGAGATTGGTGTGAGGGC
TTGGGTGTGTTCAGTTTTGGGCTTTGGTTTTCGATCGTGCCAATCTTTTC
CTGTCTGACTTTGTTGCCGGATGAAATATTCAAAGACTTTGCAATTTGGT
CGAGTGACAGTGAATTCTTTCCCACCATTTCTCTTAATTCTTGGACATTA
TGAAGTTCTTCTTCGTGTATTATTTTGACATTATTTAAATCATTTGATTT
CATCTTTTCCTGTCTGATTTTGTTGCCGAATGAATCATTCAAAGATTTTG
CAATTTGATCGAGTGACAGTGAATTCTTTCCCACCATTTCTCTCAATTCT
TGGACATGACGAAGTTCTTCTTCGTGTATTATTTTGACATCATTTGATTG
GGTGTTAATTGGTGATtggattttgaatttaatgtgagaTCCATCCTTGT
AGTTAAACACACTCAAAAGTACAATAAGTCCAAGGACTAGGATGATTATC
AGTTTAGAGCTTTGTCCGCGAAACATTCGGTTAAAACTTTAACTAATGTT
tctacaaatattttttaatgtttgacacatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014955-exon-sc0000201-1491911889:458980..460610 | TCONS_00014955-exon-sc0000201-1491911889:458980..460610 | Clytia hemisphaerica | exon |
| TCONS_00014955-exon-sc0000201-1510915933:458980..460610 | TCONS_00014955-exon-sc0000201-1510915933:458980..460610 | Clytia hemisphaerica | exon |
| TCONS_00014955-exon-sc0000201-1575043694:458980..460610 | TCONS_00014955-exon-sc0000201-1575043694:458980..460610 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000201 | supercontig | sc0000201:458980..460610 + |
Blast
BLAST of TCONS_00014955 vs. Swiss-Prot (Human)
Match: B3GT1 (Beta-1,3-galactosyltransferase 1 OS=Homo sapiens GN=B3GALT1 PE=1 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 7.367e-21 Identity = 68/234 (29.06%), Postives = 113/234 (48.29%), Query Frame = -2
Query: 293 RTTIRRTWGNPDHFPKQRAMFKNATYKVLFITGFVVDKIKKAKIE--SKTHRDMLITNRTENYFDISRRTQFGIHWTIRNC-KFDYFFKTDDDVFVSIPN-TYKLFYQDTFAVEHKTSLYAGFIHMRGGPIRDKRSKWYIDKKRWGQTVYAPFATGMAIILSRNVAERIEPYFEWKNVFPLEDVNIGFYVFVAKVPNIGVRPSKGREF-VLDYTVAICDHYKSGTITMHPVKNE 979
R IR TWG+ ++F K LF+ G D + +E S+ D+++ + ++Y +++ +T G+ W C K Y KTD D+FV++ N YKL T + + + G++ + GGPIRD RSKWY+ + + + Y PF +G I S +VAE I + LEDV +G + +G+ P + F ++C + + IT+H + E
Sbjct: 94 RQAIRETWGDENNF-------KGIKIATLFLLGKNADPVLNQMVEQESQIFHDIIVEDFIDSYHNLTLKTLMGMRWVATFCSKAKYVMKTDSDIFVNMDNLIYKLLKPST---KPRRRYFTGYV-INGGPIRDVRSKWYMPRDLYPDSNYPPFCSGTGYIFSADVAELIYKTSLHTRLLHLEDVYVGL-----CLRKLGIHPFQNSGFNHWKMAYSLCRYRR--VITVHQISPE 309
The following BLAST results are available for this feature:
|
