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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014939 ID=TCONS_00014939|Name=TCONS_00014939|organism=Clytia hemisphaerica|type=transcript|length=2249bp
gtgaattttgactttaaaagctcataagtagagaacaagttggtcaaatt
taaaaagtggtagctcaaattttaagttaggatatctactttctaaatat
caaaactccaagcactttgggacatttgttcggcctcaggatgtcgggaa
acgtctgaactttttcgtgggtcacccggtataattagtaatattctaaa
aatagcTAATAAAACTCTACTTTAATAAAACtatatgaaaaatacaaaat
aatgtGTAAAAGTGTAtgaaaaacgctaaaaaattaaataactcGAGGAG
TAATAAAATAGTCTAAAGGTTTGGACTTATTGAACGAATGATAATTCATT
CAATCGTTTCATTTCTTctaaacacaaaaaatgtcaataCACATGTCGAT
ACCAtgagagaaaaataaatttctcgCGCATAACTCTATACCAGCCCATC
CGTACGTCGGCCGTAAAAGACACACAATACCAAGTACGCTTGATCCTTTT
TAATCAATCCTCCTACataaatgcaaagtttttttgtcGTTATCCTTCTT
ATTCCTGGCAAACAGgtggattgatattcccaatgATATCATATTCAATC
AACACCACAATAGTAGTGAACAAACAATACAAAAACAAATAGACCAATCC
GAGCACGCGATTCAAGCGCCATCTTGTGAACTGTAACAACAACGGTGTCA
ACACGATGATCAGTTGACACAGATTGACGTAAACAATGGAGCCACTGTTT
AACTCGTACGGGTCATGCACAATACTACCGATCAACCAAACCAAACCAAG
GTTGATGGTGATGTTAAAGACGTTGCTTCCGTAAATACTGTATACAGCTT
TTGTTCCGTGACCAGCAATGGTTTGCAAAAATGTAGCCATTATCTCAGAG
ATGGACAAACCAGTAGCTAAGAAAGCAAATCCCATAACAGCATCGGGAAC
TTTCCAGGAATAACCGATCTCAGCAGCAATCCACACAAGAATATAGGTAA
GACCAGCTACCCATACAGTAGCAGAAAGCAGGGTTAGCGGGTAGTACTTT
CTCCAACTTGGCTTTCGACAATCAGGGATGGTAATGTAGAAAATACAAAC
TGCCGGCACACTGAAAGCCCATAGGATTTTAAAGTACCATTTATCTGGGA
TCTCAAAGGGCGATAAAGGTCCATCTATATACTGATCCATATCAAGGGTA
GTGTAATAAGAGCCTTGAACCAGTTTTCTCTTAAGACGATGGGTCATTCG
CTGAGTGTGTTGTGCAAATTTTGAAACATGACGTTGACTGTAGTCCTGTC
GAGGGGTGTTGACCAGACAATCTCCTTCCGATGCATAACCTTCCTTGGCA
TCAGACAGGTAGGCTGGGTTGATGCTGCCATACCCACGTTCTGAATGATA
ACCTCTTTCAGAAAGGTAACCACCATCTGACGCATAGCCATACCCTCCAG
CGGAAATGTAACCATCCTCAGTGCACAGTGATATACCATCTATTAAATAA
GGAAAACCCaaattaaaacatcaaaaatttgagTTAACCCTTCGAGTATC
TTCCTATCTTTTTAATAGGAGGGGGCCCAAAAATCCCAAGATTGTCAAGT
GCTATTTTAACCAGTGGTAGATATAGATAATTGGGATATGGATAATAATT
GGTTCGGCCACTTGTCTGGcttatattttacagaccagaaagtaAACTTG
ACTAAAATCATGTATTGACTGTTTGAGTTGtttgatttgactgaaatttg
ttcctGAAGGCTAATTTGTTAAATGAAAGAGACTAGtaacagaaaaaatt
cgttccCATGAACATTTGGCACTTTGCAAACCGGTCTGTATAATTCAATC
ATGTTGAACACCAGCAGGAACCACTggagcttttgacttgaaactttcac
CAGTGATAGACATTGACAATGTAAGacaatgtgcaaaatttcaatttaat
cacGAGCGGTGgcaattttacagaccggtccatATTTTATACCCGAAATG
CTCACTTTTAGTATAACCACTTTGtctgattttgctgaaattttggctgC
AAGCTTGGATTATCAATACATAGcacaaaatttgacgtcaatagCATTTT
CAACAATCACTAGATACAGTATCCTAGGACCTCTTTGCCTCCCTCTCCAA
GATTCTCGAAGGGTTAagaaaattcaacttttaaacattttcGAGTGCTT
TTTAATGATACGACCTTGCAAATTACACTCTTGGGAGATGTATTGTGTT Run BLAST on NCBI transcript from alignment at sc0000201:322789..325099+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014939 ID=TCONS_00014939|Name=TCONS_00014939|organism=Clytia hemisphaerica|type=transcript|length=2311bp|location=Sequence derived from alignment at sc0000201:322789..325099+ (Clytia hemisphaerica)
gtgaattttgactttaaaagctcataagtagagaacaagttggtcaaatt
taaaaagtggtagctcaaattttaagttaggatatctactttctaaatat
caaaactccaagcactttgggacatttgttcggcctcaggatgtcgggaa
acgtctgaactttttcgtgggtcacccggtataattagtaatattctaaa
aatagcTAATAAAACTCTACTTTAATAAAACtatatgaaaaatacaaaat
aatgtGTAAAAGTGTAtgaaaaacgctaaaaaattaaataactcGAGGAG
TAATAAAATAGTCTAAAGGTTTGGACTTATTGAACGAATGATAATTCATT
CAATCGTTTCATTTCTTctaaacacaaaaaatgtcaataCACATGTCGAT
ACCAtgagagaaaaataaatttctcgCGCATAACTCTATACCAGCCCATC
CGTACGTCGGCCGTAAAAGACACACAATACCAAGTACGCTTGATCCTTTT
TAATCAATCCTCCTACataaatgcaaagtttttttgtcGTTATCCTTCTT
ATTCCTGGCAAACAGgtggattgatattcccaatgATATCATATTCAATC
AACACCACAATAGTAGTGAACAAACAATACAAAAACAAATAGACCAATCC
GAGCACGCGATTCAAGCGCCATCTTGTGAACTGTAACAACAACGGTGTCA
ACACGATGATCAGTTGACACAGATTGACGTAAACAATGGAGCCACTGTTT
AACTCGTACGGGTCATGCACAATACTACCGATCAACCAAACCAAACCAAG
GTTGATGGTGATGTTAAAGACGTTGCTTCCGTAAATACTGTATACAGCTT
TTGTTCCGTGACCAGCAATGGTTTGCAAAAATGTAGCCATTATCTCAGAG
ATGGACAAACCAGTAGCTAAGAAAGCAAATCCCATAACAGCATCGGGAAC
TTTCCAGGAATAACCGATCTCAGCAGCAATCCACACAAGAATATAGGTAA
GACCAGCTACCCATACAGTAGCAGAAAGCAGGGTTAGCGGGTAGTACTTT
CTCCAACTTGGCTTTCGACAATCAGGGATGGTAATGTAGAAAATACAAAC
TGCCGGCACACTGAAAGCCCATAGGATTTTAAAGTACCATTTATCTGGGA
TCTCAAAGGGCGATAAAGGTCCATCTATATACTGATCCATATCAAGTGTA
GTGTAATAAGAGCCTTGGNGGGCGATAAAGGTCCATCTATATACTGATCC
ATATCAAGGGTAGTGTAATAAGAGCCTTGAACCAGTTTTCTCTTAAGACG
ATGGGTCATTCGCTGAGTGTGTTGTGCAAATTTTGAAACATGACGTTGAC
TGTAGTCCTGTCGAGGGGTGTTGACCAGACAATCTCCTTCCGATGCATAA
CCTTCCTTGGCATCAGACAGGTAGGCTGGGTTGATGCTGCCATACCCACG
TTCTGAATGATAACCTCTTTCAGAAAGGTAACCACCATCTGACGCATAGC
CATACCCTCCAGCGGAAATGTAACCATCCTCAGTGCACAGTGATATACCA
TCTATTAAATAAGGAAAACCCaaattaaaacatcaaaaatttgagTTAAC
CCTTCGAGTATCTTCCTATCTTTTTAATAGGAGGGGGCCCAAAAATCCCA
AGATTGTCAAGTGCTATTTTAACCAGTGGTAGATATAGATAATTGGGATA
TGGATAATAATTGGTTCGGCCACTTGTCTGGcttatattttacagaccag
aaagtaAACTTGACTAAAATCATGTATTGACTGTTTGAGTTGtttgattt
gactgaaatttgttcctGAAGGCTAATTTGTTAAATGAAAGAGACTAGta
acagaaaaaattcgttccCATGAACATTTGGCACTTTGCAAACCGGTCTG
TATAATTCAATCATGTTGAACACCAGCAGGAACCACTggagcttttgact
tgaaactttcacCAGTGATAGACATTGACAATGTAAGacaatgtgcaaaa
tttcaatttaatcacGAGCGGTGgcaattttacagaccggtccatATTTT
ATACCCGAAATGCTCACTTTTAGTATAACCACTTTGtctgattttgctga
aattttggctgCAAGCTTGGATTATCAATACATAGcacaaaatttgacgt
caatagCATTTTCAACAATCACTAGATACAGTATCCTAGGACCTCTTTGC
CTCCCTCTCCAAGATTCTCGAAGGGTTAagaaaattcaacttttaaacat
tttcGAGTGCTTTTTAATGATACGACCTTGCAAATTACACTCTTGGGAGA
TGTATTGTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014939-exon-sc0000201-1491911889:322789..323956 | TCONS_00014939-exon-sc0000201-1491911889:322789..323956 | Clytia hemisphaerica | exon |
| TCONS_00014939-exon-sc0000201-1510915933:322789..323956 | TCONS_00014939-exon-sc0000201-1510915933:322789..323956 | Clytia hemisphaerica | exon |
| TCONS_00014939-exon-sc0000201-1575043694:322789..323956 | TCONS_00014939-exon-sc0000201-1575043694:322789..323956 | Clytia hemisphaerica | exon |
| TCONS_00014939-exon-sc0000201-1491911889:324019..325099 | TCONS_00014939-exon-sc0000201-1491911889:324019..325099 | Clytia hemisphaerica | exon |
| TCONS_00014939-exon-sc0000201-1510915933:324019..325099 | TCONS_00014939-exon-sc0000201-1510915933:324019..325099 | Clytia hemisphaerica | exon |
| TCONS_00014939-exon-sc0000201-1575043694:324019..325099 | TCONS_00014939-exon-sc0000201-1575043694:324019..325099 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000201 | supercontig | sc0000201:322789..325099 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004837 | NaCa_Exmemb |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
BLAST of TCONS_00014939 vs. Swiss-Prot (Human)
Match: NCKX4 (Sodium/potassium/calcium exchanger 4 OS=Homo sapiens GN=SLC24A4 PE=1 SV=2) HSP 1 Score: 159.073 bits (401), Expect = 5.965e-41 Identity = 79/209 (37.80%), Postives = 129/209 (61.72%), Query Frame = -1
Query: 552 LSPFEIPDKWYFKILWAFSVPAVCIFYITIPDCRKPSWRKYYPLTLLSATVWVAGLTYILVWIAAEIGYSWKVPDAVMGFAFLATGLSISEIMATFLQTIAGHGTKAVYSIYGSNVFNITINLGLVWLIGSIVHD---PYELNSGSIVY-VNLCQLIIVLTPLLLQFTRWRLNRVLGLVYLFLYCLFTTIVVLIEYDIIGNINPPVCQE 1166
LSPF +P+ K+ W F+ P + + +TIP+C KP W K++ +T ++AT+W+A +YI+VW+ IGY+ +PD +MG FLA G S+ + MA+ + G G AV + GSNVF+I + LG+ W + ++V + ++NS +VY V L + LT L + +WRL+R LG+ L LY +F ++IE+++ +N P+C+E
Sbjct: 412 LSPFSVPEARGDKVKWVFTWPLIFLLCVTIPNCSKPRWEKFFMVTFITATLWIAVFSYIMVWLVTIIGYTLGIPDVIMGITFLAAGTSVPDCMASLIVARQGLGDMAVSNTIGSNVFDILVGLGVPWGLQTMVVNYGSTVKINSRGLVYSVVLLLGSVALTVLGIHLNKWRLDRKLGVYVLVLYAIFLCFSIMIEFNVFTFVNLPMCRE 620
The following BLAST results are available for this feature:
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