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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014931 ID=TCONS_00014931|Name=TCONS_00014931|organism=Clytia hemisphaerica|type=transcript|length=2268bp
ctttgcatgaaaacataaaggtttagagaaattaaaaaccaacagttaag
aaaaatatttaggaagtgtTATCTAGCCCCAAGAGTCACATAAACTAATG
CAGGTCCCCCCAAGATAGAGCTCCCCCCGCCTGTTGGGAAAAACAAGTAG
CTCCCACCTCTTATATGGCAAATTTTAGGTGTAGCTAACCTAGTTTCTAA
TcatgatataggagtttaagtctaAACTGCCAGCCATGAGAATTCAGTAT
ACCTCACCATTTTGTCAGCGTTTGTCCTGGGTTTCCTAAAGTAACTCATG
TCACccattctgattggtcagagaaaacaaaagtgatttGTGTGCCTGAA
TCCCACTTTTTTATTGGGTGAGATAAACTCTGTTTCAAGTTCCGATGCGC
TGCATGCTTGAGAAAACTTATTAGATATAAttgaaggtattcaatatgat
cgaaagTAATCGAAATGATCGAACAAATTGAAAATGGTCAAAGAATGTCA
TAATTTGGAGTAAAGTGACTATTCAATCACCAACAAAATTGATAGGTGGT
CACCTTCGATTATTAttgatcattattgattacttccaTCACAATTGAAC
GtccgattagtaccgtctggattCGATGACGTTATCATTAAAAGAAATTA
TGCTGTTGTGATAATTATAGACTTTTTTGCTTGAATTTGCGTTCGTTAGG
GGAGACATACCCTGGTACTTCTCTCTATCTTCTTTTCCcaatttttggac
tttgttagttaacttttttacaagttttagTGCTATTTCCAGAGTCTTGG
TGTTTGTGTACAGTTCTCTGAAATATATTGCCCAGCTGGAATATTGCTAA
TGGAAGGATTCTATCTCACTATAACAAAGCTCCATTGATCAGGAACCCAC
CATTTTTACCACTGCACCAAGACATCATGCCAAGCTAGTGTTTCTATCTA
ACTCCTATGTATTTATACTAAGGACCAGACCAGTGTCAGGACTGTAGGCA
GCCTAGTTGGGTTGGGTTGGGTTCAGGTTGGGTTATCCATAGCGAAAAGC
ACATATTGATGACATCAGCAAAATTATGCAAAATGTCCAGGCGGTGTCAA
TAAAATGAATTGAACACCGAATGAATTGAACTAGTTGGGTatagattttt
tacttttaaccTTTAAGTATatatattatgatttttttgctatttttttg
caTCCTTGGACAATCCTACTGAAAATTaatcatataaaatttttttttgt
atcaaCAATTTCCTGATTTTATAACAGTATAAGAGCTAAAGGTACATACA
GGTTTACGAGTGTCGCCCCCTCCAAGTCTTATCTCCCCATGACGATGCTT
GACTTGCTGTTAGTAAATTTGTGTGGGAGCAGTGAGTGTGCACTTATAAC
ATGtgttcatattttttcattcttttaacCATAAGCAGTTAATCTTTGAA
AACCCTATATTCTCTTATgttataatgttcttataagatgTTGCTATTTC
ATACTTTTTTACACTACTAAGGTCCTTTCATTATACCTCAATAGAATAAA
AATTGTTCCCTCAAAGATACACAGCTATGGATGAATCTGGTAAAGAAACT
AAAGATTTACAAGAGGAATGCAAAGGTTTTACGAGTAGAATAGCTCATTT
TCAGGACTTTGTTACAGAATTTAAAGAAACTATTTCCTCTTATGACAAAC
aagtttcaaatttgaagaCTGAagtcaatgataaaatttccaGTCTTAAA
TCTCCACATGTTGAAAGTAAAAAGCAAACTGAAAAGCTTCTTTCAGACTC
TGTGCATAGAGAAGCAGAACTTGAGAAGTTCAAATTGCAGTATGGTTTAT
TGTTTGGTGAAAAATCTACATGATGGAAAGGgtgcttttttatattttgt
aaataatatTATTAATAATATTCCTAGTAAcatatttcataaaatatttt
agtaaaaataatATCATGAAATAAAGAACCAACTTTCAATAGTTACATGG
TGTTTCATGCTGGTACCATCTTCAGaAATGTTATTACAACATGGAGTAAC
CTCACAATATGCTTTTGATCAActgcaaaaaatcattcaagatgaagttg
agaaaaattctcttcagagaaaattgtcttttttctcattgcttaaaatt
attttagcaAGAAATGGCAAACATGCTTTGTACTCTTGGATCAGTACCAT
TCTAGCTATATTAGACATTGTTTTAATCTTGCTTTATCTTCCGTTGAACG
ATGGCACATTACCAAGGT Run BLAST on NCBI transcript from alignment at sc0000201:177824..180979+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014931 ID=TCONS_00014931|Name=TCONS_00014931|organism=Clytia hemisphaerica|type=transcript|length=3156bp|location=Sequence derived from alignment at sc0000201:177824..180979+ (Clytia hemisphaerica)
ctttgcatgaaaacataaaggtttagagaaattaaaaaccaacagttaag
aaaaatatttaggaagtgtTATCTAGCCCCAAGAGTCACATAAACTAATG
CAGGTCCCCCCAAGATAGAGCTCCCCCCGCCTGTTGGGAAAAACAAGTAG
CTCCCACCTCTTATATGGCAAATTTTAGGTGTAGCTAACCTAGTTTCTAA
TcatgatataggagtttaagtctaAACTGCCAGCCATGAGAATTCAGTAT
ACCTCACCATTTTGTCAGCGTTTGTCCTGGGTTTCCTAAAGTAACTCATG
TCACccattctgattggtcagagaaaacaaaagtgatttGTGTGCCTGAA
TCCCACTTTTTTATTGGGTGAGATAAACTCTGTTTCAAGTTCCGATGCGC
TGCATGCTTGAGAAAACTTATTAGATATAAttgaaggtattcaatatgat
cgaaagTAATCGAAATGATCGAACAAATTGAAAATGGTCAAAGAATGTCA
TAATTTGGAGTAAAGTGACTATTCAATCACCAACAAAATTGATAGGTGGT
CACCTTCGATTATTAttgatcattattgattacttccaTCACAATTGAAC
GtccgattagtaccgtctggattCGATGACGTTATCATTAAAAGAAATTA
TGCTGTTGTGATAATTATAGACTTTTTTGCTTGAATTTGCGTTCGTTAGG
GGAGACATACCCTGGTACTTCTCTCTATCTTCTTTTCCcaatttttggac
tttgttagttaacttttttacaagttttagTGCTATTTCCAGAGTCTTGG
TGTTTGTGTACAGTTCTCTGAAATATATTGCCCAGCTGGAATATTGCTAA
TGGAAGGATTCTATCTCACTATAACAAAGCTCCATTGATCAGGAACCCAC
CATTTTTACCACTGCACCAAGACATCATGCCAAGCTAGTGTTTCTATCTA
ACTCCTATGTATTTATACTAAGGACCAGACCAGTGTCAGGACTGTAGGCA
GCCTAGTTGGGTTGGGTTGGGTTCAGGTTGGGTTATCCATAGCGAAAAGC
ACATATTGATGACATCAGCAAAATTATGCAAAATGTCCAGGCGGTGTCAA
TAAAATGAATTGAACACCGAATGAATTGAACTAGTTGGGTatagattttt
tacttttaaccTTTAAGTATatatattatgatttttttgctatttttttg
caTCCTTGGACAATCCTACTGAAAATTaatcatataaaatttttttttgt
atcaaCAATTTCCTGATTTTATAACAGTATAAGAGCTAAAGGTACATACA
GGTTTACGAGTGTCGCCCCCTCCAAGTCTTATCTCCCCATGACGATGCTT
GACTTGCTGTTAGTAAATTTGTGTGGGAGCAGTGAGTGTGCACTTATAAC
ATGtgttcatattttttcattcttttaacCATAAGCAGTTAATCTTTGAA
AACCCTATATTCTCTTATgttataatgttcttataagatgTTGCTATTTC
ATACTTTTTTACACTACTAAGGTCCTTTCATTATACCTCAATAGAATAAA
AATTGTTCCCTCAAAGATACACAGCTATGGATGAATCTGGTAAAGAAACT
AAAGATTTACAAGAGGAATGCAAAGGTTTTACGAGTAGAATAGCTCATTT
TCAGGACTTTGTTACAGAATTTAAAGAAACTATTTCCTCTTATGACAAAC
aagtttcaaatttgaagaCTGAagtcaatgataaaatttccaGTCTTAAA
TCTCCACATGTTGAAAGTAAAAAGCAAACTGAAAAGCTTCTTTCAGACTC
TGTGCATAGAGAAGCAGAACTTGAGAAGTTCAAATTGCAGTATGGTTTAT
TGTTTGGTGAAAAATCTACATGATGGAAAGGgtgcttttttatattttgt
aaataatatTATTAATAATATTCCTAGTAAcatatttcataaaatatttt
agtaaaaataatATCATGAAATAAAGAACCAACTTTCAATAGTTACATGG
TGTTTCATGCTGGTACCATCTTCAGGTAATTCagtgttttattatttttt
cataacatttataaaaaattctaataaaatctaaatataCTGCAACCATG
AACCAACCAACTGAAGATTGCACCAGTAGTAGAATTTTTGAAActagttt
ttttaattctcaaaattttgctcaaaattttgctcaaaatttagttttca
aataaatttcaaattttatcaaggTAATGAAATTGACCCCTTGCAATTAA
AGACACTACCTCAATGGCCTTAAAAGATAAAAGTATATAAATTGATAAAG
GATGCTTGAGTTTTGTACTTGCAGGAAGGTTTCAAACTTCTGATAGAGTG
CATCAAATTAAGTTGGTGTTTTTGTTAGATGTTATTGTTTTAGCATCAtg
atataaaaatattaattgatagaaaaattatttttttcatcaaaaactgG
CTTTTTGGGGGGAGAAATTTCAAGTTGCTAGATTTTCTACAAGCTGTACA
TTGTTATTttgctttgtttatttttgatacTTATATTATCGTTTATACAT
ATCAGATATAATTAGAATTTGTACAACAAATTTCCAAATTAGATGGATTT
TTAGTTTAGAatctacatatatttttcaaattgtgaaataaattttctat
ttatGTTACAAACATTTTCTAATGATTGCATTACCCTCAATTTTTCTATC
TTGTGTgtgtgcaaaaaaaaataggTTTCTTGTTCTTCTTTTGGTGAGAT
TTTATCCCAGAAATTCTTTGCTCTAAAATTACAATCAAAGATTGGAATGG
AAACTAAACTTATGTGCAACTTTTTGCATTGTGGATAGAAATTAagagac
aaaaacaaaaaaggagtTAAGTAAAGCCTCATTTAaagtgtttgaatttt
ttttttccattagaAATGTTATTACAACATGGAGTAACCTCACAATATGC
TTTTGATCAActgcaaaaaatcattcaagatgaagttgagaaaaattctc
ttcagagaaaattgtcttttttctcattgcttaaaattattttagcaAGA
AATGGCAAACATGCTTTGTACTCTTGGATCAGTACCATTCTAGCTATATT
AGACATTGTTTTAATCTTGCTTTATCTTCCGTTGAACGATGGCACATTAC
CAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014931-exon-sc0000201-1491911889:177824..179848 | TCONS_00014931-exon-sc0000201-1491911889:177824..179848 | Clytia hemisphaerica | exon |
| TCONS_00014931-exon-sc0000201-1510915933:177824..179848 | TCONS_00014931-exon-sc0000201-1510915933:177824..179848 | Clytia hemisphaerica | exon |
| TCONS_00014931-exon-sc0000201-1575043694:177824..179848 | TCONS_00014931-exon-sc0000201-1575043694:177824..179848 | Clytia hemisphaerica | exon |
| TCONS_00014931-exon-sc0000201-1491911889:180737..180979 | TCONS_00014931-exon-sc0000201-1491911889:180737..180979 | Clytia hemisphaerica | exon |
| TCONS_00014931-exon-sc0000201-1510915933:180737..180979 | TCONS_00014931-exon-sc0000201-1510915933:180737..180979 | Clytia hemisphaerica | exon |
| TCONS_00014931-exon-sc0000201-1575043694:180737..180979 | TCONS_00014931-exon-sc0000201-1575043694:180737..180979 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000201 | supercontig | sc0000201:177824..180979 + |
Blast
The following BLAST results are available for this feature:
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