TCONS_00014919 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014919
Unique NameTCONS_00014919
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length621

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014919 ID=TCONS_00014919|Name=TCONS_00014919|organism=Clytia hemisphaerica|type=transcript|length=621bp
TTTTGGAAGCTTGATTTTGAGGATAGAGTCcttgaattttgaatgtttcT
CAAGTTCACGAGATGAGACTTCTTTGTCTATAAAGGAGATGAGTGTACGA
AGATTAGAAACTTCGGATTGACTTGTGGTTCCAAAGGATTCTTTAATGAG
TGTTCGAAGATCTTTAGATATACATTCGAGTGATTTGGAGAGGTCACTTG
TTTctttttgagcagtttggaggtCAGGATTTGTTGCTTGAGATGGAACA
AAGGATGTCTTGCTTTCAACGAGTTTGAGTTTTTGTTGAATACTCTTGGT
AGCAAATTCGATAGATTTAACTTGTGCCGATTGGGTGGTTTGAGCGATAG
CTCTTTTCATGGTACGTTTCTTGGCTAGACCGTCTTTGGTATATGCTTTG
ATGATTTGCAAGGTGGTCTGGTAGCTTTGATCGTCATCAGTATGAAGGTC
GGCATGCAGTTGCTTAAATGATGCCTTGAGTGTCCCGATGGTGTTAAGGG
AATCGCTTATCTCGTCAATGTCGACCAAGTCAATGATGGGGTTCTCGTCT
ATGAAATCTTCAATATCCTCTTGGATGAGTTTCAATCTACGCTCGGCGGA
TTCCATCATCTGTTTGAATTC
Run BLAST on NCBI

protein sequence of TCONS_00014919-protein

>TCONS_00014919-protein ID=TCONS_00014919-protein|Name=TCONS_00014919-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
EFKQMMESAERRLKLIQEDIEDFIDENPIIDLVDIDEISDSLNTIGTLKA
SFKQLHADLHTDDDQSYQTTLQIIKAYTKDGLAKKRTMKRAIAQTTQSAQ
VKSIEFATKSIQQKLKLVESKTSFVPSQATNPDLQTAQKETSDLSKSLEC
ISKDLRTLIKESFGTTSQSEVSNLRTLISFIDKEVSSRELEKHSKFKDSI
LKIKLPK
Run BLAST on NCBI

transcript from alignment at sc0000200:241993..242613

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014919 ID=TCONS_00014919|Name=TCONS_00014919|organism=Clytia hemisphaerica|type=transcript|length=621bp|location=Sequence derived from alignment at sc0000200:241993..242613 (Clytia hemisphaerica)
GAATTCAAACAGATGATGGAATCCGCCGAGCGTAGATTGAAACTCATCCA
AGAGGATATTGAAGATTTCATAGACGAGAACCCCATCATTGACTTGGTCG
ACATTGACGAGATAAGCGATTCCCTTAACACCATCGGGACACTCAAGGCA
TCATTTAAGCAACTGCATGCCGACCTTCATACTGATGACGATCAAAGCTA
CCAGACCACCTTGCAAATCATCAAAGCATATACCAAAGACGGTCTAGCCA
AGAAACGTACCATGAAAAGAGCTATCGCTCAAACCACCCAATCGGCACAA
GTTAAATCTATCGAATTTGCTACCAAGAGTATTCAACAAAAACTCAAACT
CGTTGAAAGCAAGACATCCTTTGTTCCATCTCAAGCAACAAATCCTGacc
tccaaactgctcaaaaagAAACAAGTGACCTCTCCAAATCACTCGAATGT
ATATCTAAAGATCTTCGAACACTCATTAAAGAATCCTTTGGAACCACAAG
TCAATCCGAAGTTTCTAATCTTCGTACACTCATCTCCTTTATAGACAAAG
AAGTCTCATCTCGTGAACTTGAgaaacattcaaaattcaagGACTCTATC
CTCAAAATCAAGCTTCCAAAA

Coding sequence (CDS) from alignment at sc0000200:241993..242613

>TCONS_00014919 ID=TCONS_00014919|Name=TCONS_00014919|organism=Clytia hemisphaerica|type=CDS|length=621bp|location=Sequence derived from alignment at sc0000200:241993..242613 (Clytia hemisphaerica)
GAATTCAAACAGATGATGGAATCCGCCGAGCGTAGATTGAAACTCATCCA
AGAGGATATTGAAGATTTCATAGACGAGAACCCCATCATTGACTTGGTCG
ACATTGACGAGATAAGCGATTCCCTTAACACCATCGGGACACTCAAGGCA
TCATTTAAGCAACTGCATGCCGACCTTCATACTGATGACGATCAAAGCTA
CCAGACCACCTTGCAAATCATCAAAGCATATACCAAAGACGGTCTAGCCA
AGAAACGTACCATGAAAAGAGCTATCGCTCAAACCACCCAATCGGCACAA
GTTAAATCTATCGAATTTGCTACCAAGAGTATTCAACAAAAACTCAAACT
CGTTGAAAGCAAGACATCCTTTGTTCCATCTCAAGCAACAAATCCTGacc
tccaaactgctcaaaaagAAACAAGTGACCTCTCCAAATCACTCGAATGT
ATATCTAAAGATCTTCGAACACTCATTAAAGAATCCTTTGGAACCACAAG
TCAATCCGAAGTTTCTAATCTTCGTACACTCATCTCCTTTATAGACAAAG
AAGTCTCATCTCGTGAACTTGAgaaacattcaaaattcaagGACTCTATC
CTCAAAATCAAGCTTCCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008341XLOC_008341Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014919-exon-sc0000200-1491911889:241993..242613TCONS_00014919-exon-sc0000200-1491911889:241993..242613Clytia hemisphaericaexon
TCONS_00014919-exon-sc0000200-1510915933:241993..242613TCONS_00014919-exon-sc0000200-1510915933:241993..242613Clytia hemisphaericaexon
TCONS_00014919-exon-sc0000200-1575043694:241993..242613TCONS_00014919-exon-sc0000200-1575043694:241993..242613Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014919-proteinTCONS_00014919-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000200supercontigsc0000200:241993..242613 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.976929	0.946177	0.284784	0.19995	4.34563	4.90256	6.97714	9.57478	5.82499	12.4952	5.33762	7.28707	5.09893	6.83519	8.36564	8.18012	6.22326	8.16501	4.51558	11.1223	5.11466	5.08215	1.10753	3.70279	3.27217	4.16071	3.7655	4.36729	5.53204	5.2616
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014919 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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