TCONS_00014897 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014897
Unique NameTCONS_00014897
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length624

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014897 ID=TCONS_00014897|Name=TCONS_00014897|organism=Clytia hemisphaerica|type=transcript|length=624bp
ATGGAAATAGTAGAGATTTAAATTATTGAATACTCTTTGAGTGGGTTTAC
ACGAAATGTTAAAGTTGCTGGAATTTCGTTTTCATTTCGAAAATCGTTGA
GTGTTACTATTAAACCAAAGCAGATGAATATTATGTACAATTTGAAAATC
TGTGGAACTATATAGCTCaaaatttttggactttgtaacGTAAAAAAGTA
TTTTCCGATAAAAGGCTACTTGAACTCAAGAAGTATAATTCTCCAGACCA
GATTAAATCAAAATGCCAGCACGTCGTAGTATCAGCTTTCGTAAATTAAT
GCACCGCCTTTCGAGGAGCACCGAAGACTTAACGGGCGTAGGGCGTTACA
GAAGTACAGAGAATTTGTATGAATTTCGTGAGGAAGACGAACAGGGCGTT
CAACAACAATCAAACGATAATgatgtttttgagaaaaaccCCGAAATTAG
GTGGCCAACAGTGGATGAACTCTTTGAAGCTTACCAAACATACTTGGATA
ATGGTCGTAAAtatcgattacgttcgattgaagGATGGGAAGGGAGAACG
AAGAAGGGTGAAGAGAAAGATGAAGAAGAGAGACAAGTTGTTTTGGATGA
CGAGCAGTTATTGGAACAGTACCA
Run BLAST on NCBI

protein sequence of TCONS_00014897-protein

>TCONS_00014897-protein ID=TCONS_00014897-protein|Name=TCONS_00014897-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MPARRSISFRKLMHRLSRSTEDLTGVGRYRSTENLYEFREEDEQGVQQQS
NDNDVFEKNPEIRWPTVDELFEAYQTYLDNGRKYRLRSIEGWEGRTKKGE
EKDEEERQVVLDDEQLLEQY
Run BLAST on NCBI

transcript from alignment at sc0000200:232269..233290-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014897 ID=TCONS_00014897|Name=TCONS_00014897|organism=Clytia hemisphaerica|type=transcript|length=1022bp|location=Sequence derived from alignment at sc0000200:232269..233290- (Clytia hemisphaerica)
ATGGAAATAGTAGAGATTTAAATTATTGAATACTCTTTGAGTGGGTTTAC
ACGAAATGTTAAAGTTGCTGGAATTTCGTTTTCATTTCGAAAATCGTTGA
GTGTTACTATTAAACCAAAGCAGATGAATATTATGTACAATTTGAAAATC
TGTGGAACTATATAGCTCAAAATTTTTGGACTTTGTAACGTAAAAAAGTA
TTTTCCGATAAAAGGCTACTTGAACTCAAGAAGTATAATTCTCCAGACCA
GATTAAATCAAAATGCCAGCACGTCGTAGTATCAGCTTTCGTAAATTAAT
GCACCGCCTTTCGAGGAGCACCGAAGACTTAACGGGCGTAGGGCGTTACA
GAAGTACAGAGAATTTGTATGAATTTCGTGAGGAAGACGAACAGGGCGTT
CAACAACAATCAAACGATAATGATGTTTTTGAGAAAAACCCCGAAATTAG
GTCAGTATTCGTTTCCTTTCGTTCATGAAATTCTTATTATCGTCTCTGCC
CTTTTTGTTTAGTAATCCTACTATACTGACAATAAAGTGTCTCGACAACT
CAAAGGTAGTCAAAATCCGTTTTCTGGTTTTCCTGCGTAACTAACTCTAA
CAAAAAGTCCCCACTATCGCAGGATGGCTAAACTAACTCATTCCCGGGAA
ACATTATTGACGCATTACTGAGATTTTTCCGCTGTCTTTTTCGGGCATAC
TGGCGTTTTCCCAATTTTGTAATGATTTTGAGTCAATCCAATGTATAAAA
AGGTTTAAAAGATCACATTACCGAATCTTCCAGAAGATTCTCACCGAAAC
CGAAAAGCGGATCTTTTTTGATAAATTTATTTCTTTCTATTGATACAGGT
GGCCAACAGTGGATGAACTCTTTGAAGCTTACCAAACATACTTGGATAAT
GGTCGTAAATATCGATTACGTTCGATTGAAGGATGGGAAGGGAGAACGAA
GAAGGGTGAAGAGAAAGATGAAGAAGAGAGACAAGTTGTTTTGGATGACG
AGCAGTTATTGGAACAGTACCA

Coding sequence (CDS) from alignment at sc0000200:232269..233290-

>TCONS_00014897 ID=TCONS_00014897|Name=TCONS_00014897|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at sc0000200:232269..233290- (Clytia hemisphaerica)
GTGGCCAACAGTGGATGAACTCTTTGAAGCTTACCAAACATACTTGGATA
ATGGTCGTAAATATCGATTACGTTCGATTGAAGGATGGGAAGGGAGAACG
AAGAAGGGTGAAGAGAAAGATGAAGAAGAGAGACAAGTTGTTTTGGATGA
CGAGCAGTTATTGGAACAGTACATGCCAGCACGTCGTAGTATCAGCTTTC
GTAAATTAATGCACCGCCTTTCGAGGAGCACCGAAGACTTAACGGGCGTA
GGGCGTTACAGAAGTACAGAGAATTTGTATGAATTTCGTGAGGAAGACGA
ACAGGGCGTTCAACAACAATCAAACGATAATGATGTTTTTGAGAAAAACC
CCGAAATTAGGTGGCCAACAGTGGATGAACTCTTTGAAGCTTACCAAACA
TACTTGGATAATGGTCGTAAATATCGATTACGTTCGATTGAAGGATGGGA
AGGGAGAACGAAGAAGGGTGAAGAGAAAGATGAAGAAGAGAGACAAGTTG
TTTTGGATGACGAGCAGTTATTGGAACAGTACATGCCAGCACGTCGTAGT
ATCAGCTTTCGTAAATTAATGCACCGCCTTTCGAGGAGCACCGAAGACTT
AACGGGCGTAGGGCGTTACAGAAGTACAGAGAATTTGTATGAATTTCGTG
AGGAAGACGAACAGGGCGTTCAACAACAATCAAACGATAATGATGTTTTT
GAGAAAAACCCCGAAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008329XLOC_008329Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014897-proteinTCONS_00014897-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014897-exon-sc0000200-1575043694:232841..233290TCONS_00014897-exon-sc0000200-1575043694:232841..233290Clytia hemisphaericaexon
TCONS_00014897-exon-sc0000200-1575043694:232269..232442TCONS_00014897-exon-sc0000200-1575043694:232269..232442Clytia hemisphaericaexon
TCONS_00014897-exon-sc0000200-1510915933:232841..233290TCONS_00014897-exon-sc0000200-1510915933:232841..233290Clytia hemisphaericaexon
TCONS_00014897-exon-sc0000200-1510915933:232269..232442TCONS_00014897-exon-sc0000200-1510915933:232269..232442Clytia hemisphaericaexon
TCONS_00014897-exon-sc0000200-1491911889:232841..233290TCONS_00014897-exon-sc0000200-1491911889:232841..233290Clytia hemisphaericaexon
TCONS_00014897-exon-sc0000200-1491911889:232269..232442TCONS_00014897-exon-sc0000200-1491911889:232269..232442Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000200supercontigsc0000200:232269..233290 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0967945	0.189397	0.115286	0	0.219818	0.617373	0	0.0892326	0	0	0.625413	1.8304	0	0	0	0.131557	1.5449	1.71172	0.0826552	0.120949	0.0980195	0	0.183571	0.245748	2.6961	1.12592	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014897 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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