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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014896 ID=TCONS_00014896|Name=TCONS_00014896|organism=Clytia hemisphaerica|type=transcript|length=1504bpRun BLAST on NCBI transcript from alignment at sc0000200:148426..158966- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014896 ID=TCONS_00014896|Name=TCONS_00014896|organism=Clytia hemisphaerica|type=transcript|length=10541bp|location=Sequence derived from alignment at sc0000200:148426..158966- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00014896 vs. Swiss-Prot (Human)
Match: TRIO (Triple functional domain protein OS=Homo sapiens GN=TRIO PE=1 SV=2) HSP 1 Score: 187.963 bits (476), Expect = 3.243e-50 Identity = 119/314 (37.90%), Postives = 186/314 (59.24%), Query Frame = 1
Query: 433 KAGLDVMLSVPRRANDAMYLCLIKGFDEQGSLETLGKILLQDSFTIFDPKHILKKAKDRHVFLFEQALLFCKENKDTNGKCTFEFKTKLKTSEMGITEYMAEDKCKFAVWTGAPPYTEEKRIIKAESEEVKHMWVKEIRNLTQQFQF---GLLQARASFYPTSP--RKRGNRKST---SQADISFSSDTYNNDRALSDCDTATICSRLS---LDNSSMI-VTDRYIVTDDFTPKPGHEHEIALIKGQTVDILGRPPGSASWRVRIMDSDVTGDAEGLVPFNVLKKIEESPLRNKRSSVETLHSQSSEDSFATDS 1338
K GL+VMLSVP+RANDAM+L +++GFDE ++E+ G+++LQ+SF ++DPK +++K ++RH+FLFE +L+F KE KD++G+ + +K+KL TSE+G+TE++ D CKFA+W G P ++ K ++KA S E K W+K IR + Q+ G L+ T+P R++G R SQ D S S DT +I SR S LD+ + + +V DFT + +E+ + +GQTV++L RP W + + +D + AEGLVP L + + RSS+E + +DS + S
Sbjct: 1451 KDGLEVMLSVPKRANDAMHLSMLEGFDE--NIESQGELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQERTIHLKGALKEPIHIPKTAPATRQKGRRDGEDLDSQGDGS------------SQPDTISIASRTSQNTLDSDKLSGGCELTVVIHDFT--ACNSNELTIRRGQTVEVLERPHDKPDWCL-VRTTDRSPAAEGLVPCGSL------CIAHSRSSMEMEGIFNHKDSLSVSS 1741 HSP 2 Score: 82.4185 bits (202), Expect = 2.731e-16 Identity = 49/144 (34.03%), Postives = 78/144 (54.17%), Query Frame = 1
Query: 439 GLDVMLSVPRRANDAMYLCLIKGFDEQGSLETLGKILLQDSFTIFDP-KHILKKAKDRHVFLFEQALLFCK--ENKDTNGKCTFEFKTKLKTSEMGITEYMAEDKCKFAVWTGAPPYTEEKRIIKAESEEVKHMWVKEIRNLTQ 861
++VM VPRR ND M + ++GFD G + GK+LLQD+F + D +L + ++R +FLFEQ ++F + + K F FK +K S + + E + D CKFA+ T E I+ + S V+ W+ EI + +
Sbjct: 2131 AVEVMCIVPRRCNDMMNVGRLQGFD--GKIVAQGKLLLQDTFLVTDQDAGLLPRCRERRIFLFEQIVIFSEPLDKKKGFSMPGFLFKNSIKVSCLCLEENVENDPCKFAL-TSRTGDVVETFILHSSSPSVRQTWIHEINQILE 2271 The following BLAST results are available for this feature:
BLAST of TCONS_00014896 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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