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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014879 ID=TCONS_00014879|Name=TCONS_00014879|organism=Clytia hemisphaerica|type=transcript|length=8133bp transcript from alignment at sc0000200:128603..185526- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014879 ID=TCONS_00014879|Name=TCONS_00014879|organism=Clytia hemisphaerica|type=transcript|length=56924bp|location=Sequence derived from alignment at sc0000200:128603..185526- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00014879 vs. Swiss-Prot (Human)
Match: TRIO (Triple functional domain protein OS=Homo sapiens GN=TRIO PE=1 SV=2) HSP 1 Score: 603.208 bits (1554), Expect = 1.693e-174 Identity = 401/1218 (32.92%), Postives = 679/1218 (55.75%), Query Frame = 1
Query: 169 KILKKIKGSGHSFLSKHPWVGDCLELAEEILSDQDDFEKSFQETYVKSKKLIESAAQLAESKECDPQDIKAKASFLESEVKNFTAKLKKRRELLKMAVNFYKNSQKLAKATDKLKEEVNLEGAEPQNFDEHLEKHRNDCESTLEKILATVHDGQILSSQLLQEGKVPEKDSRTSFFSHGSHSVEHSRQAVESHLKELNQNRQQLEKLWRGRQKKLDYWVKVKHYERDTNTLYLDVSKWNS--SWQKKEL-SADVNKAVNLVKRFEDEYKDLAERFSALIEEGKQLEDLLN---TSGIEVLITLKDAKVDSR-QHIAHIIKQSGSEFSVVKKIHHSLKVKYDFSIKQRKLEADAKKVSGWIRHGESILQASQEAGFSMFEAEALLREYERFHNAIETTRLGVLDIKTNAEKLKADGHQDYITIMNISENVDSKWKTLMQHAEERRAVVFSSYNFYRAAEQIGKLLEKFSKDCRSEEDPCAVFSSYELRFRREKIEALMKQSEPERKAVEDGCLKVKDSSQEFLKHVLPSSDGNQTPVIEGTVGRLEITVQDLVEQVTSQEAFVLKQIQLRKNVLANCAXXXXXXXXXXQTLSIIQEQGTVLSEGFNSLQNEAEETQTVEGEDQQKTHLEKEEEYRTMFIQIRDGVKKLLKQASDHISRIHYHRVAISELATSIDKRYKDLEQVMKQYRESLEKKLETTLPAYEDEEEWPSLSVFELTNTDLKVARRDVSHDSGIHEISEEKRRSVKRIEFIIKELIQTERAYVDDMKCCIDNFLTPMYSS-PDLPNALRGASDIIFGNIEHIHEFHSKVFLRELVKYEKCPENVGNCFIEWADKFHMYVDFCANKPDSNSLLIEHGETFFEDLQQKKNLGLSLAAYLIKPVQRITKYQXXXXXXXXXXXXXXGSLQAGLDVMLSVPRRANDAMYLCLIKGFDEQGSLETLGKILLQDSFTIFDPKHILKKAKDRHVFLFEQALLFCKENKDTNGKCTFEFKTKLKTSEMGITEYMAEDKCKFAVWTGAPPYTEEKRIIKAESEEVKHMWVKEIRNLTQQFQF---GLLQARASFYPTSP--RKRGNRKST---SQADISFSSDTYNNDRALSDCDTATICSRLS---LDNSSMI-VTDRYIVTDDFTPKPGHEHEIALIKGQTVDILGRPPGSASWRVRIMDSDVTGDAEGLVPFNVLKKIEESPLRNKRSSVETLHSQSSEDSFATDS 3762
++L I+ G +FLSKH VG L A + +DFE+ Q TY + KL+E+A QLA++ ECDP++I A LE +++F ++++R+ LL M+V+F+ + ++L ++L++E+ D+ + + +++ ++ +++EG+ + R S S S +E+ L++L++ + Q+E+L++ R+ KL+ +++++ +ERD + D+ WN S Q + + D+ A ++ D+ + +I +G+ L +N SG+E+L +D + +R Q + + + E + + H + + ++ R L+A+ K+V GWIR+GES+L A S+ EAE L RE+E+F +AIE T L ++ AE + H D I + +E V S W+ LM E+R +V +S FY+ +EQ+ +LE ++ + EED C + + ++ + +++A C + ++ FLK++ + P + + E V++++ ++ +E VL +RK L C ++V FE Q L I + G S + + TQ + L++ EE++ Q ++ VK L++ A + H H I + T++DKRY+D M++YR SLEK L + + + + L + + +V RD +H E++EEKR+S +R EFI+ ELIQTE+AYV D++ C+D +L M S ++P + IIFGN++ I+EFH+ +FL+EL KYE+ PE+VG+CF+ WADKF MYV +C NKPDS L++EH ++F+++QQ+ L S+++YLIKPVQRITKYQLLLK+LL+CC++ G ++ GL+VMLSVP+RANDAM+L +++GFDE ++E+ G+++LQ+SF ++DPK +++K ++RH+FLFE +L+F KE KD++G+ + +K+KL TSE+G+TE++ D CKFA+W G P ++ K ++KA S E K W+K IR + Q+ G L+ T+P R++G R SQ D S S DT +I SR S LD+ + + +V DFT + +E+ + +GQTV++L RP W + + +D + AEGLVP L + + RSS+E + +DS + S
Sbjct: 577 QVLDWIENHGEAFLSKHTGVGKSLHRARALQKRHEDFEEVAQNTYTNADKLLEAAEQLAQTGECDPEEIYQAAHQLEDRIQDFVRRVEQRKILLDMSVSFHTHVKELWTWLEELQKEL---------LDDVYAESVEAVQDLIKRFGQQQQTTLQVTVNVIKEGEDLIQQLRDSAISSNKTPHNSSINHIETVLQQLDEAQSQMEELFQERKIKLELFLQLRIFERDAIDIISDLESWNDELSQQMNDFDTEDLTIAEQRLQHHADKALTMNNLTFDVIHQGQDLLQYVNEVQASGVELLCD-RDVDMATRVQDLLEFLHEKQQELDLAAEQH---RKHLEQCVQLRHLQAEVKQVLGWIRNGESMLNAGLITASSLQEAEQLQREHEQFQHAIEKTHQSALQVQQKAEAMLQANHYDMDMIRDCAEKVASHWQQLMLKMEDRLKLVNASVAFYKTSEQVCSVLESLEQEYKREEDWCGGADKLGPNSETDHVTPMISKHLEQKEAFLKACTLARRNADVFLKYL--HRNSVNMPGMVTHIKAPEQQVKNILNELFQRENRVLHYWTMRKRRLDQCQQYVVFERSAKQALEWIHDNGEFYLSTHTSTGSSIQHTQEL---------LKEHEEFQITAKQTKERVKLLIQLADGFCEKGHAHAAEIKKCVTAVDKRYRDFSLRMEKYRTSLEKALGISSDSNKSSKSL-QLDIIPASIPGSEVKLRDAAH-----ELNEEKRKSARRKEFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNNIFLKELEKYEQLPEDVGHCFVTWADKFQMYVTYCKNKPDSTQLILEHAGSYFDEIQQRHGLANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGEIKDGLEVMLSVPKRANDAMHLSMLEGFDE--NIESQGELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQERTIHLKGALKEPIHIPKTAPATRQKGRRDGEDLDSQGDGS------------SQPDTISIASRTSQNTLDSDKLSGGCELTVVIHDFT--ACNSNELTIRRGQTVEVLERPHDKPDWCL-VRTTDRSPAAEGLVPCGSL------CIAHSRSSMEMEGIFNHKDSLSVSS 1741 HSP 2 Score: 246.514 bits (628), Expect = 8.525e-65 Identity = 126/352 (35.80%), Postives = 221/352 (62.78%), Query Frame = 1
Query: 4117 NEPEDAGFQEGDYDSEGDSMSDSNESYTSSVKGDSEER---AVLKRMTVLRELIKTENDYINDLELIELKYRPAFLQRDDIPEELKNRDRIIFGNLTDILDFHKGTLIKDLQQCESTPENLPNVFLKSEKKFEHYIQYCANKPRSATLIHDHLPNIFADISNQLQLKSSLDEYLMKPISRIMNYHTVLKDYIKYTQRAGLNTDLLFQALHVMQSIPKKSDDVMNIGMLEGFKDNLNEQGKLLIQDTLYVA--NAKLQEASSERRVFLFEQMVIFCEPFERKT--NLKAYMYQYSIETHTLGLTQSSFDDDPCKLAIWSKKEDGSSDIYVMAAQNATAKKTWIDSIRRILEDQ 5151
+ P +GD S + SD++ +SS + EER ++ +R VL+EL++TE DY+ DL + Y A ++ D +P+++K +D+I+FGN+ I D+H+ + +L++C PE L ++F+K E++ YI YC NKP+S ++ +++ F D+ +L + L + L+KP+ RIM Y +LKD++KY+++A L+T L +A+ VM +P++ +D+MN+G L+GF + QGKLL+QDT V +A L ERR+FLFEQ+VIF EP ++K ++ ++++ SI+ L L + + ++DPCK A+ S+ D + +++ + + + ++TWI I +ILE+Q
Sbjct: 1925 DRPSSLLVDQGDSSSPSFNPSDNSLLSSSSPIDEMEERKSSSLKRRHYVLQELVETERDYVRDLGYVVEGYM-ALMKEDGVPDDMKGKDKIVFGNIHQIYDWHRDFFLGELEKCLEDPEKLGSLFVKHERRLHMYIAYCQNKPKSEHIVSEYIDTFFEDLKQRLGHRLQLTDLLIKPVQRIMKYQLLLKDFLKYSKKASLDTSELERAVEVMCIVPRRCNDMMNVGRLQGFDGKIVAQGKLLLQDTFLVTDQDAGLLPRCRERRIFLFEQIVIFSEPLDKKKGFSMPGFLFKNSIKVSCLCL-EENVENDPCKFALTSRTGD-VVETFILHSSSPSVRQTWIHEINQILENQ 2273 HSP 3 Score: 233.802 bits (595), Expect = 5.786e-61 Identity = 135/364 (37.09%), Postives = 206/364 (56.59%), Query Frame = 1
Query: 6271 YTVQYQVLGSSTWQMAVAACHDTRTTVENLIAGKSYRFLVTAHNNQGNSVESEPSDPICVGDIASPRRNVHEIKWREKVENHYQICGELGRGRFSIVKRCVEKSTNKEYAAKIVRRRMVKKETVESEVAILQELNHSAIVSLHEIYDAPNGLVLVEQLLTGGRLFDHIVIMDNLTEQIAVRHVKELLLAISYLHKNNIAHLDVKPENILLTGG-ESPSVVVSDFGDAVRINKRVPYQHELSGNPEFAAPEIVSGDTISLATDMWSXXXXXXXXXXXXSPFYSDNRERACANVTEIRYTFPDDFFAEISDEAKDFIEELLVRDQTSRPDADECLNFAWMKMTEPRKIPI-ELSRLAAFNARRRYQ 7356
Y++ Y LG +T ++ D + A N+ G++ S + P + + W++ ++ Y ELGRGRFS+VK+C +K T + A K V ++++K++ V E+ ILQ L H +V L + ++ P +LV ++ GRL D +V +LTE H+ E+L A+ YLH IAHLD+KPENIL+ P++ ++DFGDAV++N Y H+L GNPEFAAPEI+ G+ +SL +D WSVGV+ +VLL GVSPF D+ E C N+ + ++FPDD+F +S +AK+F+ LL D RP A L W++ R + + SRL +F RR++Q
Sbjct: 2732 YSISYSDLGEATLKIVGVTTEDDGI------------YTCIAVNDMGSASSSASLR------VLGPGMDGIMVTWKDNFDSFYSEVAELGRGRFSVVKKCDQKGTKRAVATKFVNKKLMKRDQVTHELGILQSLQHPLLVGLLDTFETPTSYILVLEMADQGRLLDCVVRWGSLTEGKIRAHLGEVLEAVRYLHNCRIAHLDLKPENILVDESLAKPTIKLADFGDAVQLNTTY-YIHQLLGNPEFAAPEIILGNPVSLTSDTWSVGVLTYVLLSGVSPFLDDSVEETCLNICRLDFSFPDDYFKGVSQKAKEFVCFLLQEDPAKRPSAALALQEQWLQAGNGRSTGVLDTSRLTSFIERRKHQ 3076 HSP 4 Score: 201.83 bits (512), Expect = 2.857e-51 Identity = 129/444 (29.05%), Postives = 222/444 (50.00%), Query Frame = 1
Query: 4252 VLRELIKTENDYINDL-ELIELKYRPAFLQRDDIPEELKNRDRIIFGNLTDILDFHKGTLIKDLQQCESTPENLPNVFLKSEKKFEHYIQYCANKPRSATLIHDHLPNIFADISNQLQLKSSLDEYLMKPISRIMNYHTVLKDYIKYTQRA-GLNTDLLFQALHVMQSIPKKSDDVMNIGMLEGFKDNLNEQGKLLIQDTLYVANAK-LQEASSERRVFLFEQMVIFCEPFERKTNLKAYMYQYSIETHTLGLTQSSFDDDPCKLAIWSKKEDGSSDIYVMAAQNATAKKTWIDSIRRILEDQ------------HGKVSRQSIGSNSSFNSDDIQLNGGGGGRPQLTDKMGKIIPSLQHVNLVPLDQLKGKKGSNEDLSKPTIEHKRYMVTENYQALSSEELSVHKGEIVYLIHR--DKKSATFYRVRSFTKEREGLVPSKIL 5532
++ ELI+TE Y+ DL E ++ ++IP + N++ IIFGN+ +I +FH +K+L++ E PE++ + F+ KF+ Y+ YC NKP S LI +H + F +I + L +S+ YL+KP+ RI Y +LK+ + + G D L VM S+PK+++D M++ MLEGF +N+ QG+L++Q++ V + K L ER +FLFE ++F + + + Y+Y+ + T LG+T+ + DPCK A+W + S + V+ A + K+ WI IR +++++ H + + + +D+ G G +P I S N + D+L G + +V ++ A +S EL++ +G+ V ++ R DK R + EGLVP L
Sbjct: 1296 IMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNNIFLKELEKYEQLPEDVGHCFVTWADKFQMYVTYCKNKPDSTQLILEHAGSYFDEIQQRHGLANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGEIKD----GLEVMLSVPKRANDAMHLSMLEGFDENIESQGELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTE-HVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQERTIHLKGALKEPIHIPKTAPATRQKGRRDGEDLDSQGDGSSQPDTIS-----IASRTSQNTLDSDKLSGGC-------------ELTVVIHDFTACNSNELTIRRGQTVEVLERPHDKPDWCLVRTTDRSPAAEGLVPCGSL 1716 HSP 5 Score: 200.29 bits (508), Expect = 7.573e-51 Identity = 117/320 (36.56%), Postives = 182/320 (56.88%), Query Frame = 1
Query: 2344 IHEISEEKRRSVKRIEFIIKELIQTERAYVDDMKCCIDNFLTPMYSSPDLPNALRGASDIIFGNIEHIHEFHSKVFLRELVKYEKCPENVGNCFIEWADKFHMYVDFCANKPDSNSLLIEHGETFFEDLQQKKNLGLSLAAYLIKPVQRITKYQXXXX---XXXXXXXXXXGSLQAGLDVMLSVPRRANDAMYLCLIKGFDEQGSLETLGKILLQDSFTIFDP-KHILKKAKDRHVFLFEQALLFCK--ENKDTNGKCTFEFKTKLKTSEMGITEYMAEDKCKFAVWTGAPPYTEEKRIIKAESEEVKHMWVKEIRNLTQ 3285
I E+ E K S+KR ++++EL++TER YV D+ ++ ++ M +P+ ++G I+FGNI I+++H FL EL K + PE +G+ F++ + HMY+ +C NKP S ++ E+ +TFFEDL+Q+ L L LIKPVQRI KYQLLLK L+ ++VM VPRR ND M + ++GFD G + GK+LLQD+F + D +L + ++R +FLFEQ ++F + + K F FK +K S + + E + D CKFA+ T E I+ + S V+ W+ EI + +
Sbjct: 1956 IDEMEERKSSSLKRRHYVLQELVETERDYVRDLGYVVEGYMALMKED-GVPDDMKGKDKIVFGNIHQIYDWHRDFFLGELEKCLEDPEKLGSLFVKHERRLHMYIAYCQNKPKSEHIVSEYIDTFFEDLKQRLGHRLQLTDLLIKPVQRIMKYQLLLKDFLKYSKKASLDTSELERAVEVMCIVPRRCNDMMNVGRLQGFD--GKIVAQGKLLLQDTFLVTDQDAGLLPRCRERRIFLFEQIVIFSEPLDKKKGFSMPGFLFKNSIKVSCLCLEENVENDPCKFAL-TSRTGDVVETFILHSSSPSVRQTWIHEINQILE 2271 The following BLAST results are available for this feature:
BLAST of TCONS_00014879 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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