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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014876 ID=TCONS_00014876|Name=TCONS_00014876|organism=Clytia hemisphaerica|type=transcript|length=2776bp TTGTCAAATTACaatataaaataattaaaaaaactgacagGCAATGACCT CTGTGGAAAAGCACTCCGCAACCACCACCACGGTGGACCCACCCGTCAGT ACGGTGGTAGCCACGCGGTCGCGTGGTTTATCTTTTACACAACGACCGCG CTTACTGTCAGACATGGAAGACCGGTTGTTAGATCAAATGATCACAACCT CCTGTCTTTTCTGGATCAAATTCAAACTTAGAAGAGGTGGTGATAAGAAG GACAAAAAAGACAaagcaaagaaatcgaaagtcaActCTGGAACTTTACT CCGAACGGCATCTCTCAAACGTAAGAAGAAGGAAAAAGAGAAGTTGAACG GAGAAGCGAACACATCGAACACAGAGAAACCAGTCCTCGATACATTGCAT CATCACTGGCAATCCAACTTCGATTCGTCTGACGATGACGCGGCGAAAGA AGCGAACGCCAAAGCAGCGGAAAAACTTCAACACATCATTCACCGTGACC CGAAATCGACGTTCGAAGTCGCACCCGAATTCAAAATCTTACCTCGCGAC GTCACCGTTGAAGTAGCGACTCACGTCAAATTAACGTGTACGGTATTAGC GAATCCGACGCCGAACGTCATCTGGACTAAAAACGACCATATCGAACTTC AATCCGGAGACAAATATCAAATCGACTTTAAGAACTCTATGTGTACCCTC GAAATTCTCTCGACCGAGGTTTCCGATACGGGGACGTACACAGTAACGGC TAGTAACAATTTAGGGACTGCCTCATACTCGGCAAAAATTACGGTACGTG GTGAAAACAAACCGGGCGCACCTTCCAAACCTTTTTTCACTTCGGTCACG CCAACTTCGCTCGACATCCGGTGGTATCCACCTTCCGACATTGACAACTG CCCGGTATCAGGGTATACGGTACAGTACCAAGTATTGGGAAGTAGCACCT GGCAAATGGCCGTTGCCGCTTGTCACGACACGCGGACGACCGTTGAGAAT TTGATCGCAGGGAAATCGTACAGATTTTTAGTGACGGCGCATAACAACCA AGGCAATAGCGTGGAGAGTGAACCGTCAGATCCAATCTGTGTTGGTGATA TTGCCTCACCACGTCGTAACGTACACGAGATCAAATGGCGTGAAAAGGTC GAAAACCACTACCAAATTTGCGGAGAACTGGGCCGAGGTCGTTTCTCGAT CGTCAAACGTTGCGTAGAAAAATCAACAAATAAAGAGTACGCAGCGAAAA TCGTACGACGCCGCATGGTGAAGAAAGAGACTGTGGAGAGTGAAGTAGCT ATACTACAAGAGTTGAACCACTCAGCTATCGTTTCTTTACATGAGATCTA TGACGCACCAAACGGACTGGTCCTCGTTGAACAACTGTTGACGGGAGGCC GTTTGTTCGATCACATCGTTATCATGGACAATTTGACGGAACAAATCGCC GTCCGACACGTTAAAGAACTTCTCTTAGCGATCAGCTACTTACACAAAAA TAATATCGCACATCTCGACGTCAAACCGGAAAACATTTTACTGACCGGTG GGGAATCACCGTCCGTAGTAGTGTCAGATTTTGGAGATGCTGTCCGCATT AATAAACGAGTTCCATATCAACATGAGTTGTCTGGGAACCCGGAGTTTGC AGcACCGGAAATCGTAAGCGGAGATACGATAAGTCTGGCTACTGATATGT GGAGTGTCGGAGTCGTTGTTTTCGTTTTATTGGGCGGCGTGTCGCCATTT TATTCAGACAATCGTGAACGTGCATGCGCAAATGTCACTGAGATAAGATA TACATTCCCGGACGATTTCTTCGCCGAAATTTCGGACGAAgctaaagact ttattgaagaatTATTAGTACGCGATCAAACCTCGCGGCCTGATGCGGAC GAATGTTTAAATTTCGCTTGGATGAAAATGACTGAACCAAGAAAAATACC GATCGAACTTTCTAGACTAGCTGCTTTCAATGCTAGACGGAGATATCAAT ATGAGAGTAATAACCAGTCTAACGTGACGTCGTCACAGTTGCTGTCATCA CCACAGAAGAAAGGATCGACCAACAGATAACACTAGCTTGGAATCTAGTC TTCTTTCtctgttttttttagaaaatttattcTCTTTCTctgacttttta atttttttaggtttttctcgaggacttttttttttagttttaaccccttt taaacttttatttatatgtttTAAAGCAGTGCTTATAAACGAAAATTACG CATAGACAAGCATATATTATACTTTTAAGAATTCTATTTGTGGAGCTGAT GTAGATCTTGAATGTCTGAACCAGAACTGAACCAGTTAGAACCACTTTTG ATAATCGCAGTTCTGAGAAAAATGTTTTATCTTGAAAACTTTGAACATGT GTTGATATTTTTTAGCTGGTAGATAGAAGGTTGGTTACTTACTATCCGTT AAATAACAAATGTCCGAAttaatatataaataaatagaTATCCGAGAATT TTAGGCACTTTTTACACTTTGAAGATATTTACAAAACcaactttttttgt taatattttttttgcgttttttatttgaacgcGATCCCTaataaattttg gttttatttgtTTTCGTTTGTTAGtgtcactttttttttcttaagcccaa atttttattttatgacgttttttttgtttgtctgtTTTTATGTAAATTAT CTGTCAGACTTAtaaaaaatttgtgtttcttccataaaattgaaaaaata tacaatgaatattttagatatttttg Run BLAST on NCBI transcript from alignment at sc0000200:128603..133290- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014876 ID=TCONS_00014876|Name=TCONS_00014876|organism=Clytia hemisphaerica|type=transcript|length=4688bp|location=Sequence derived from alignment at sc0000200:128603..133290- (Clytia hemisphaerica) TTGTCAAATTACAATATAAAATAATTAAAAAAACTGACAGGCAATGACCT
CTGTGGAAAAGCACTCCGCAACCACCACCACGGTGGACCCACCCGTCAGT
ACGGTGGTAGCCACGCGGTCGCGTGGTTTATCTTTTACACAACGACCGCG
CTTACTGTCAGACATGGAAGACCGGTTGTTAGATCAAATGATCACAACCT
CCTGTCTTTTCTGGATCAAATTCAAACTTAGAAGGTTGGGATATAAATGT
ATTGAATTCTGCACTACGAATGCAAATTTTTTCTTATGTTGATTTTCTTA
TATTCCAGGCTTTCCTCCTATATGAATATTTAGTCCTCGTCAAATTTGAA
TAATATCAAAAATGACTTGATATAATATGACTTGATTTGTCCCTCATAGT
GGATTAGAAATTTCGGATTATCCGTTATGTCAGAAATGACATCTCAATTT
GTCACGACGTTGCAATCATTTTAATGAATATTTTTCTCTTCTATTTTCTC
AGAGGTGGTGATAAGAAGGACAAAAAAGACAAAGCAAAGAAATCGAAAGT
CAAGTAAGTCCCCTTTTGATTGCTTTTCGTGGCTCTCTATCAAGGCTTAA
ACACTTTCGTTCCTAGTATAGTACTTCTATGACCGGCATTCTATATGTGA
CTCACTGGGGTTACTTGTTCTAAATATTGTCTTCGATTTTTGAGTGATAA
AAATGAGAAATACATTTTCACAAAAGTAAAACAAATTAATTTGACACATA
TATAAATGTTTTCTTAACTTTTTGGTTCCAAATAAAGAACCTGCTATCGG
CGTTCCCTTTTCTTGTATAATGGAGATTATAATTTGTCTAATGATGTTTA
TCTAATAATGAAACATTAGAGAGATGAACGAGATCACAATCTAGAAAGTT
TATCTAATTGCACCTGCCGAGAGATTCAATTCCGCATTTTCCATAAGAAA
TCTTCACTATTCTCCAAAAATATTATAATCGGCCTTTTGAATCGTAAATA
CCCTGTAAAATCTTATCGGAATTTGCAGCTCTGAGTTGTTTGAACGGTTC
TGCCTTTCCTTGGAGTGGACAATATGTCACTAAAGAAATGAGAGATAGGT
ACTAACATTCAGAGTGAAGCTTCATGTTCTAATAAACTTTATAAAAACAT
GTATATTTTTTCTACTCTTGATAAATAATTTAAAGATACTCGCTGTTCTT
TTCAATAATTTCATTTTTTCTTCATTTCTACCACCTTTCTTCACCTTTTC
ACAAAATGAAAGGCCTTCCAAATGAAATGAACTTGTAGTAGCAGATCGTC
CATAATGGACTACTAGTCTCAACAATTATTTCCTCTGATGTGAAAACACA
GTTTTATGGTGTGATTGAGGGTGTGGAACTACTCTTTCAGAATAAAATGA
TTCGATCTTTCAAAAAAGGGTAATTTGGTTGTCATTGTTCATTCTTAGGT
AGAGTCACTTCTACAAGAATACCATAATGTATTCACCATCCTTAGCAGCA
TTCTAAACGTTACTTTTTTTCTTTCTAGCTCTGGAACTTTACTCCGAACG
GCATCTCTCAAACGTAAGAAGAAGGAAAAAGAGAAGTTGAACGGAGAAGC
GAACACATCGAACACAGAGAAACCAGTCCTCGATACATTGCATCATCACT
GGCAATCCAACTTCGATTCGTCTGACGATGACGCGGCGAAAGAAGCGAAC
GCCAAAGCAGCGGAAAAACTTCAACACATCATTCACCGTGACCCGAAATC
GACGTTCGAAGTCGCACCCGAATTCAAAATCTTACCTCGCGACGTCACCG
TTGAAGTAGCGACTCACGTCAAATTAACGTGTACGGTATTAGCGAATCCG
ACGCCGAACGTCATCTGGACTAAAAACGACCATATCGAACTTCAATCCGG
AGACAAATATCAAATCGACTTTAAGAACTCTATGTGTACCCTCGAAATTC
TCTCGACCGAGGTTTCCGATACGGGGACGTACACAGTAACGGCTAGTAAC
AATTTAGGGACTGCCTCATACTCGGCAAAAATTACGGTACGTGGTGAAAA
CAAACCGGGCGCACCTTCCAAACCTTTTTTCACTTCGGTCACGCCAACTT
CGCTCGACATCCGGTGGTATCCACCTTCCGACATTGACAACTGCCCGGTA
TCAGGGTATACGGTACAGTACCAAGTATTGGGAAGTAGCACCTGGCAAAT
GGCCGTTGCCGCTTGTCACGACACGCGGACGACCGTTGAGAATTTGATCG
CAGGGAAATCGTACAGATTTTTAGTGACGGCGCATAACAACCAAGGCAAT
AGCGTGGAGAGTGAACCGTCAGATCCAATCTGTGTTGGTGATATTGGTAA
GTTCCACAAAGTGTCCGTTTTTTAAAATTGATGTGAACCTCGAGTATATC
ATTGAATATAAGTAAAGATATTAACCAAACATGGCTGAAAATGTCTTTTA
AATCAGACTCCACAACTCGAACGAATTTCAATTCCCCGTGCGTGTTCGAG
TTATGGAGACTCCTTGTATCACAGAGTGTGACATTTTAATTAACTAATTC
AAACTTTATTTCTTCTACAGCCTCACCACGTCGTAACGTACACGAGATCA
AATGGCGTGAAAAGGTCGAAAACCACTACCAAATTTGCGGAGAACTGGGC
CGAGGTCGTTTCTCGATCGTCAAACGTTGCGTAGAAAAATCAACAAATAA
AGAGTACGCAGCGAAAATCGTACGACGCCGCATGGTGAAGAAAGAGACTG
TGGAGAGTGAAGTAGCTATACTACAAGAGTTGAACCACTCAGCTATCGTT
TCTTTACATGAGATCTATGACGCACCAAACGGACTGGTCCTCGTTGAACA
ACTGTAAGTCAAATCTTTGGAATCAATTTCAATAAATTTTACTCGAAGAC
ATTTCTTGGCTGGGTACAAAAAAAACCCCTTTCCTGTTTTTCGCTTTACC
AATTTCGAAAACCCATTTTTTAATAGGCTTTAAAGTCATTTTTAATTTTG
GACTCTTTGAAACTCTTTTGGCTTCTATGCGATAGCTAGTTCTTGAAATT
CCAGTATAATTCATGTATACTAAAACTAAACTATGATGCGCTTTTCGTTT
TGCAGGTTGACGGGAGGCCGTTTGTTCGATCACATCGTTATCATGGACAA
TTTGACGGAACAAATCGCCGTCCGACACGTTAAAGAACTTCTCTTAGCGA
TCAGCTACTTACACAAAAATAATATCGCACATCTCGACGTCAAACCGGAA
AACATTTTACTGACCGGTGGGGAATCACCGTCCGTAGTAGTGTCAGATTT
TGGAGATGCTGTCCGCATTAATAAACGAGTTCCATATCAACATGAGTTGT
CTGGGAACCCGGAGTTTGCAGGTAAATAATGGTCTTTGCTCTTTTAATCT
TCGTTTTTTATCAGTTAATCAGAAAAAAACTTTCTAAAGATCTTACTCAT
TCAAATATAACTGCATTGACGTCCTAAATATATCCGACTCCTTATCTTTT
CTTTAAATCACTTTCATGGAAAGTACCTTCATATTTTAAATTTGAATTTT
TTTTCTCATTTTAGCACCGGAAATCGTAAGCGGAGATACGATAAGTCTGG
CTACTGATATGTGGAGTGTCGGAGTCGTTGTTTTCGTTTTATTGGGCGGC
GTGTCGCCATTTTATTCAGACAATCGTGAACGTGCATGCGCAAATGTCAC
TGAGATAAGATATACATTCCCGGACGATTTCTTCGCCGAAATTTCGGACG
AAGCTAAAGACTTTATTGAAGAATTATTAGTACGCGATCAAACCTCGCGG
CCTGATGCGGACGAATGTTTAAATTTCGCTTGGATGAAAATGACTGAACC
AAGAAAAATACCGATCGAACTTTCTAGACTAGCTGCTTTCAATGCTAGAC
GGAGATATCAATATGAGAGTAATAACCAGTCTAACGTGACGTCGTCACAG
TTGCTGTCATCACCACAGAAGAAAGGATCGACCAACAGATAACACTAGCT
TGGAATCTAGTCTTCTTTCTCTGTTTTTTTTAGAAAATTTATTCTCTTTC
TCTGACTTTTTAATTTTTTTAGGTTTTTCTCGAGGACTTTTTTTTTTAGT
TTTAACCCCTTTTAAACTTTTATTTATATGTTTTAAAGCAGTGCTTATAA
ACGAAAATTACGCATAGACAAGCATATATTATACTTTTAAGAATTCTATT
TGTGGAGCTGATGTAGATCTTGAATGTCTGAACCAGAACTGAACCAGTTA
GAACCACTTTTGATAATCGCAGTTCTGAGAAAAATGTTTTATCTTGAAAA
CTTTGAACATGTGTTGATATTTTTTAGCTGGTAGATAGAAGGTTGGTTAC
TTACTATCCGTTAAATAACAAATGTCCGAATTAATATATAAATAAATAGA
TATCCGAGAATTTTAGGCACTTTTTACACTTTGAAGATATTTACAAAACC
AACTTTTTTTGTTAATATTTTTTTTGCGTTTTTTATTTGAACGCGATCCC
TAATAAATTTTGGTTTTATTTGTTTTCGTTTGTTAGTGTCACTTTTTTTT
TCTTAAGCCCAAATTTTTATTTTATGACGTTTTTTTTGTTTGTCTGTTTT
TATGTAAATTATCTGTCAGACTTATAAAAAATTTGTGTTTCTTCCATAAA
ATTGAAAAAATATACAATGAATATTTTAGATATTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00014876-exon-sc0000200-1575043694:133057..133290 | TCONS_00014876-exon-sc0000200-1575043694:133057..133290 | Clytia hemisphaerica | exon |
| TCONS_00014876-exon-sc0000200-1575043694:132738..132788 | TCONS_00014876-exon-sc0000200-1575043694:132738..132788 | Clytia hemisphaerica | exon |
| TCONS_00014876-exon-sc0000200-1575043694:130945..131762 | TCONS_00014876-exon-sc0000200-1575043694:130945..131762 | Clytia hemisphaerica | exon |
| TCONS_00014876-exon-sc0000200-1575043694:130438..130720 | TCONS_00014876-exon-sc0000200-1575043694:130438..130720 | Clytia hemisphaerica | exon |
| TCONS_00014876-exon-sc0000200-1575043694:129920..130185 | TCONS_00014876-exon-sc0000200-1575043694:129920..130185 | Clytia hemisphaerica | exon |
| TCONS_00014876-exon-sc0000200-1575043694:128603..129726 | TCONS_00014876-exon-sc0000200-1575043694:128603..129726 | Clytia hemisphaerica | exon |
| TCONS_00014876-exon-sc0000200-1510915933:133057..133290 | TCONS_00014876-exon-sc0000200-1510915933:133057..133290 | Clytia hemisphaerica | exon |
| TCONS_00014876-exon-sc0000200-1510915933:132738..132788 | TCONS_00014876-exon-sc0000200-1510915933:132738..132788 | Clytia hemisphaerica | exon |
| TCONS_00014876-exon-sc0000200-1510915933:130945..131762 | TCONS_00014876-exon-sc0000200-1510915933:130945..131762 | Clytia hemisphaerica | exon |
| TCONS_00014876-exon-sc0000200-1510915933:130438..130720 | TCONS_00014876-exon-sc0000200-1510915933:130438..130720 | Clytia hemisphaerica | exon |
| TCONS_00014876-exon-sc0000200-1510915933:129920..130185 | TCONS_00014876-exon-sc0000200-1510915933:129920..130185 | Clytia hemisphaerica | exon |
| TCONS_00014876-exon-sc0000200-1510915933:128603..129726 | TCONS_00014876-exon-sc0000200-1510915933:128603..129726 | Clytia hemisphaerica | exon |
| TCONS_00014876-exon-sc0000200-1491911889:133057..133290 | TCONS_00014876-exon-sc0000200-1491911889:133057..133290 | Clytia hemisphaerica | exon |
| TCONS_00014876-exon-sc0000200-1491911889:132738..132788 | TCONS_00014876-exon-sc0000200-1491911889:132738..132788 | Clytia hemisphaerica | exon |
| TCONS_00014876-exon-sc0000200-1491911889:130945..131762 | TCONS_00014876-exon-sc0000200-1491911889:130945..131762 | Clytia hemisphaerica | exon |
| TCONS_00014876-exon-sc0000200-1491911889:130438..130720 | TCONS_00014876-exon-sc0000200-1491911889:130438..130720 | Clytia hemisphaerica | exon |
| TCONS_00014876-exon-sc0000200-1491911889:129920..130185 | TCONS_00014876-exon-sc0000200-1491911889:129920..130185 | Clytia hemisphaerica | exon |
| TCONS_00014876-exon-sc0000200-1491911889:128603..129726 | TCONS_00014876-exon-sc0000200-1491911889:128603..129726 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0000200 | supercontig | sc0000200:128603..133290 - |
Blast
BLAST of TCONS_00014876 vs. Swiss-Prot (Human)
Match: KALRN (Kalirin OS=Homo sapiens GN=KALRN PE=1 SV=2) HSP 1 Score: 351.673 bits (901), Expect = 2.899e-101 Identity = 204/520 (39.23%), Postives = 303/520 (58.27%), Query Frame = 2
Query: 497 DPKSTFEVAPEFKILPRDVTVEVATHVKLTCTVLANPTPNVIWTKNDHIELQSGDKYQIDFKNSMC-----TLEILSTEVSDTGTYTVTASNNLGTASYSAKITVRGENKPGAPSKPFFTSVTPTSLDIRWYPPSDIDNCPVSGYTVQYQVLGSSTWQMAVAACHDTRTTVENLIAGKSYRFLVTAHNNQGNSVESEPSDPICVGDIASPRRNVHEIKWREKVENHYQICGELGRGRFSIVKRCVEKSTNKEYAAKIVRRRMVKKETVESEVAILQELNHSAIVSLHEIYDAPNGLVLVEQLLTGGRLFDHIVIMDNLTEQIAVRHVKELLLAISYLHKNNIAHLDVKPENILLTGG-ESPSVVVSDFGDAVRINKRVPYQHELSGNPEFAAPEIVSGDTISLATDMWSXXXXXXXXXXXXSPFYSDNRERACANVTEIRYTFPDDFFAEISDEAKDFIEELLVRDQTSRPDADECLNFAWMKMTEP--RKIPIELSRLAAFNARRRYQYESNNQSNVTS 2032
+P EVAPEF + DVT + V L C V P P + W D L + D + S C TL+I + D+G YT A+N+ GT S SA + V+G P AP++P + TS+ +RW PPS NC +SGYTV+Y+ GS WQ +VA+ DT +E+L G Y+F V+A N G S+ SEPS+ + + + + I W+E ++ Y E+GRGRFSIVK+C+ K+T K+ A K V ++M KKE E A+LQ L H ++LH+ Y++P +L+ +L+ GRL D+++ D L E+ ++++++ A+ YLH +AHLD+KPEN+L+ P V + D DAV+I+ + H L GNPEFAAPE++ G +SL TD+WS+GV+ +V+L GVSPF +++E C NV + ++FP ++F +S+ A+DFI +L D RP A CL W++ KIP++ SRLA F RR++Q + NV S
Sbjct: 2461 NPNFIQEVAPEFLVPLVDVTCLLGDTVILQCKVCGRPKPTITWKGPDQNILDT-DNSSATYTVSSCDSGEITLKICNLMPQDSGIYTCIATNDHGTTSTSATVKVQG--VPAAPNRPIAQERSCTSVILRWLPPSSTGNCTISGYTVEYREEGSQIWQQSVASTLDTYLVIEDLSPGCPYQFRVSASNPWGISLPSEPSEFVRLPEYDAAADGA-TISWKENFDSAYTELNEIGRGRFSIVKKCIHKATRKDVAVKFVSKKMKKKEQAAHEAALLQHLQHPQYITLHDTYESPTSYILILELMDDGRLLDYLMNHDELMEEKVAFYIRDIMEALQYLHNCRVAHLDIKPENLLIDLRIPVPRVKLIDLEDAVQISGHF-HIHHLLGNPEFAAPEVIQGIPVSLGTDIWSIGVLTYVMLSGVSPFLDESKEETCINVCRVDFSFPHEYFCGVSNAARDFINVILQEDFRRRPTAATCLQHPWLQPHNGSYSKIPLDTSRLACFIERRKHQNDVRPIPNVKS 2975
The following BLAST results are available for this feature:
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