TCONS_00014876 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014876
Unique NameTCONS_00014876
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2776

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014876 ID=TCONS_00014876|Name=TCONS_00014876|organism=Clytia hemisphaerica|type=transcript|length=2776bp
TTGTCAAATTACaatataaaataattaaaaaaactgacagGCAATGACCT
CTGTGGAAAAGCACTCCGCAACCACCACCACGGTGGACCCACCCGTCAGT
ACGGTGGTAGCCACGCGGTCGCGTGGTTTATCTTTTACACAACGACCGCG
CTTACTGTCAGACATGGAAGACCGGTTGTTAGATCAAATGATCACAACCT
CCTGTCTTTTCTGGATCAAATTCAAACTTAGAAGAGGTGGTGATAAGAAG
GACAAAAAAGACAaagcaaagaaatcgaaagtcaActCTGGAACTTTACT
CCGAACGGCATCTCTCAAACGTAAGAAGAAGGAAAAAGAGAAGTTGAACG
GAGAAGCGAACACATCGAACACAGAGAAACCAGTCCTCGATACATTGCAT
CATCACTGGCAATCCAACTTCGATTCGTCTGACGATGACGCGGCGAAAGA
AGCGAACGCCAAAGCAGCGGAAAAACTTCAACACATCATTCACCGTGACC
CGAAATCGACGTTCGAAGTCGCACCCGAATTCAAAATCTTACCTCGCGAC
GTCACCGTTGAAGTAGCGACTCACGTCAAATTAACGTGTACGGTATTAGC
GAATCCGACGCCGAACGTCATCTGGACTAAAAACGACCATATCGAACTTC
AATCCGGAGACAAATATCAAATCGACTTTAAGAACTCTATGTGTACCCTC
GAAATTCTCTCGACCGAGGTTTCCGATACGGGGACGTACACAGTAACGGC
TAGTAACAATTTAGGGACTGCCTCATACTCGGCAAAAATTACGGTACGTG
GTGAAAACAAACCGGGCGCACCTTCCAAACCTTTTTTCACTTCGGTCACG
CCAACTTCGCTCGACATCCGGTGGTATCCACCTTCCGACATTGACAACTG
CCCGGTATCAGGGTATACGGTACAGTACCAAGTATTGGGAAGTAGCACCT
GGCAAATGGCCGTTGCCGCTTGTCACGACACGCGGACGACCGTTGAGAAT
TTGATCGCAGGGAAATCGTACAGATTTTTAGTGACGGCGCATAACAACCA
AGGCAATAGCGTGGAGAGTGAACCGTCAGATCCAATCTGTGTTGGTGATA
TTGCCTCACCACGTCGTAACGTACACGAGATCAAATGGCGTGAAAAGGTC
GAAAACCACTACCAAATTTGCGGAGAACTGGGCCGAGGTCGTTTCTCGAT
CGTCAAACGTTGCGTAGAAAAATCAACAAATAAAGAGTACGCAGCGAAAA
TCGTACGACGCCGCATGGTGAAGAAAGAGACTGTGGAGAGTGAAGTAGCT
ATACTACAAGAGTTGAACCACTCAGCTATCGTTTCTTTACATGAGATCTA
TGACGCACCAAACGGACTGGTCCTCGTTGAACAACTGTTGACGGGAGGCC
GTTTGTTCGATCACATCGTTATCATGGACAATTTGACGGAACAAATCGCC
GTCCGACACGTTAAAGAACTTCTCTTAGCGATCAGCTACTTACACAAAAA
TAATATCGCACATCTCGACGTCAAACCGGAAAACATTTTACTGACCGGTG
GGGAATCACCGTCCGTAGTAGTGTCAGATTTTGGAGATGCTGTCCGCATT
AATAAACGAGTTCCATATCAACATGAGTTGTCTGGGAACCCGGAGTTTGC
AGcACCGGAAATCGTAAGCGGAGATACGATAAGTCTGGCTACTGATATGT
GGAGTGTCGGAGTCGTTGTTTTCGTTTTATTGGGCGGCGTGTCGCCATTT
TATTCAGACAATCGTGAACGTGCATGCGCAAATGTCACTGAGATAAGATA
TACATTCCCGGACGATTTCTTCGCCGAAATTTCGGACGAAgctaaagact
ttattgaagaatTATTAGTACGCGATCAAACCTCGCGGCCTGATGCGGAC
GAATGTTTAAATTTCGCTTGGATGAAAATGACTGAACCAAGAAAAATACC
GATCGAACTTTCTAGACTAGCTGCTTTCAATGCTAGACGGAGATATCAAT
ATGAGAGTAATAACCAGTCTAACGTGACGTCGTCACAGTTGCTGTCATCA
CCACAGAAGAAAGGATCGACCAACAGATAACACTAGCTTGGAATCTAGTC
TTCTTTCtctgttttttttagaaaatttattcTCTTTCTctgacttttta
atttttttaggtttttctcgaggacttttttttttagttttaaccccttt
taaacttttatttatatgtttTAAAGCAGTGCTTATAAACGAAAATTACG
CATAGACAAGCATATATTATACTTTTAAGAATTCTATTTGTGGAGCTGAT
GTAGATCTTGAATGTCTGAACCAGAACTGAACCAGTTAGAACCACTTTTG
ATAATCGCAGTTCTGAGAAAAATGTTTTATCTTGAAAACTTTGAACATGT
GTTGATATTTTTTAGCTGGTAGATAGAAGGTTGGTTACTTACTATCCGTT
AAATAACAAATGTCCGAAttaatatataaataaatagaTATCCGAGAATT
TTAGGCACTTTTTACACTTTGAAGATATTTACAAAACcaactttttttgt
taatattttttttgcgttttttatttgaacgcGATCCCTaataaattttg
gttttatttgtTTTCGTTTGTTAGtgtcactttttttttcttaagcccaa
atttttattttatgacgttttttttgtttgtctgtTTTTATGTAAATTAT
CTGTCAGACTTAtaaaaaatttgtgtttcttccataaaattgaaaaaata
tacaatgaatattttagatatttttg
Run BLAST on NCBI

transcript from alignment at sc0000200:128603..133290-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014876 ID=TCONS_00014876|Name=TCONS_00014876|organism=Clytia hemisphaerica|type=transcript|length=4688bp|location=Sequence derived from alignment at sc0000200:128603..133290- (Clytia hemisphaerica)
TTGTCAAATTACAATATAAAATAATTAAAAAAACTGACAGGCAATGACCT CTGTGGAAAAGCACTCCGCAACCACCACCACGGTGGACCCACCCGTCAGT ACGGTGGTAGCCACGCGGTCGCGTGGTTTATCTTTTACACAACGACCGCG CTTACTGTCAGACATGGAAGACCGGTTGTTAGATCAAATGATCACAACCT CCTGTCTTTTCTGGATCAAATTCAAACTTAGAAGGTTGGGATATAAATGT ATTGAATTCTGCACTACGAATGCAAATTTTTTCTTATGTTGATTTTCTTA TATTCCAGGCTTTCCTCCTATATGAATATTTAGTCCTCGTCAAATTTGAA TAATATCAAAAATGACTTGATATAATATGACTTGATTTGTCCCTCATAGT GGATTAGAAATTTCGGATTATCCGTTATGTCAGAAATGACATCTCAATTT GTCACGACGTTGCAATCATTTTAATGAATATTTTTCTCTTCTATTTTCTC AGAGGTGGTGATAAGAAGGACAAAAAAGACAAAGCAAAGAAATCGAAAGT CAAGTAAGTCCCCTTTTGATTGCTTTTCGTGGCTCTCTATCAAGGCTTAA ACACTTTCGTTCCTAGTATAGTACTTCTATGACCGGCATTCTATATGTGA CTCACTGGGGTTACTTGTTCTAAATATTGTCTTCGATTTTTGAGTGATAA AAATGAGAAATACATTTTCACAAAAGTAAAACAAATTAATTTGACACATA TATAAATGTTTTCTTAACTTTTTGGTTCCAAATAAAGAACCTGCTATCGG CGTTCCCTTTTCTTGTATAATGGAGATTATAATTTGTCTAATGATGTTTA TCTAATAATGAAACATTAGAGAGATGAACGAGATCACAATCTAGAAAGTT TATCTAATTGCACCTGCCGAGAGATTCAATTCCGCATTTTCCATAAGAAA TCTTCACTATTCTCCAAAAATATTATAATCGGCCTTTTGAATCGTAAATA CCCTGTAAAATCTTATCGGAATTTGCAGCTCTGAGTTGTTTGAACGGTTC TGCCTTTCCTTGGAGTGGACAATATGTCACTAAAGAAATGAGAGATAGGT ACTAACATTCAGAGTGAAGCTTCATGTTCTAATAAACTTTATAAAAACAT GTATATTTTTTCTACTCTTGATAAATAATTTAAAGATACTCGCTGTTCTT TTCAATAATTTCATTTTTTCTTCATTTCTACCACCTTTCTTCACCTTTTC ACAAAATGAAAGGCCTTCCAAATGAAATGAACTTGTAGTAGCAGATCGTC CATAATGGACTACTAGTCTCAACAATTATTTCCTCTGATGTGAAAACACA GTTTTATGGTGTGATTGAGGGTGTGGAACTACTCTTTCAGAATAAAATGA TTCGATCTTTCAAAAAAGGGTAATTTGGTTGTCATTGTTCATTCTTAGGT AGAGTCACTTCTACAAGAATACCATAATGTATTCACCATCCTTAGCAGCA TTCTAAACGTTACTTTTTTTCTTTCTAGCTCTGGAACTTTACTCCGAACG GCATCTCTCAAACGTAAGAAGAAGGAAAAAGAGAAGTTGAACGGAGAAGC GAACACATCGAACACAGAGAAACCAGTCCTCGATACATTGCATCATCACT GGCAATCCAACTTCGATTCGTCTGACGATGACGCGGCGAAAGAAGCGAAC GCCAAAGCAGCGGAAAAACTTCAACACATCATTCACCGTGACCCGAAATC GACGTTCGAAGTCGCACCCGAATTCAAAATCTTACCTCGCGACGTCACCG TTGAAGTAGCGACTCACGTCAAATTAACGTGTACGGTATTAGCGAATCCG ACGCCGAACGTCATCTGGACTAAAAACGACCATATCGAACTTCAATCCGG AGACAAATATCAAATCGACTTTAAGAACTCTATGTGTACCCTCGAAATTC TCTCGACCGAGGTTTCCGATACGGGGACGTACACAGTAACGGCTAGTAAC AATTTAGGGACTGCCTCATACTCGGCAAAAATTACGGTACGTGGTGAAAA CAAACCGGGCGCACCTTCCAAACCTTTTTTCACTTCGGTCACGCCAACTT CGCTCGACATCCGGTGGTATCCACCTTCCGACATTGACAACTGCCCGGTA TCAGGGTATACGGTACAGTACCAAGTATTGGGAAGTAGCACCTGGCAAAT GGCCGTTGCCGCTTGTCACGACACGCGGACGACCGTTGAGAATTTGATCG CAGGGAAATCGTACAGATTTTTAGTGACGGCGCATAACAACCAAGGCAAT AGCGTGGAGAGTGAACCGTCAGATCCAATCTGTGTTGGTGATATTGGTAA GTTCCACAAAGTGTCCGTTTTTTAAAATTGATGTGAACCTCGAGTATATC ATTGAATATAAGTAAAGATATTAACCAAACATGGCTGAAAATGTCTTTTA AATCAGACTCCACAACTCGAACGAATTTCAATTCCCCGTGCGTGTTCGAG TTATGGAGACTCCTTGTATCACAGAGTGTGACATTTTAATTAACTAATTC AAACTTTATTTCTTCTACAGCCTCACCACGTCGTAACGTACACGAGATCA AATGGCGTGAAAAGGTCGAAAACCACTACCAAATTTGCGGAGAACTGGGC CGAGGTCGTTTCTCGATCGTCAAACGTTGCGTAGAAAAATCAACAAATAA AGAGTACGCAGCGAAAATCGTACGACGCCGCATGGTGAAGAAAGAGACTG TGGAGAGTGAAGTAGCTATACTACAAGAGTTGAACCACTCAGCTATCGTT TCTTTACATGAGATCTATGACGCACCAAACGGACTGGTCCTCGTTGAACA ACTGTAAGTCAAATCTTTGGAATCAATTTCAATAAATTTTACTCGAAGAC ATTTCTTGGCTGGGTACAAAAAAAACCCCTTTCCTGTTTTTCGCTTTACC AATTTCGAAAACCCATTTTTTAATAGGCTTTAAAGTCATTTTTAATTTTG GACTCTTTGAAACTCTTTTGGCTTCTATGCGATAGCTAGTTCTTGAAATT CCAGTATAATTCATGTATACTAAAACTAAACTATGATGCGCTTTTCGTTT TGCAGGTTGACGGGAGGCCGTTTGTTCGATCACATCGTTATCATGGACAA TTTGACGGAACAAATCGCCGTCCGACACGTTAAAGAACTTCTCTTAGCGA TCAGCTACTTACACAAAAATAATATCGCACATCTCGACGTCAAACCGGAA AACATTTTACTGACCGGTGGGGAATCACCGTCCGTAGTAGTGTCAGATTT TGGAGATGCTGTCCGCATTAATAAACGAGTTCCATATCAACATGAGTTGT CTGGGAACCCGGAGTTTGCAGGTAAATAATGGTCTTTGCTCTTTTAATCT TCGTTTTTTATCAGTTAATCAGAAAAAAACTTTCTAAAGATCTTACTCAT TCAAATATAACTGCATTGACGTCCTAAATATATCCGACTCCTTATCTTTT CTTTAAATCACTTTCATGGAAAGTACCTTCATATTTTAAATTTGAATTTT TTTTCTCATTTTAGCACCGGAAATCGTAAGCGGAGATACGATAAGTCTGG CTACTGATATGTGGAGTGTCGGAGTCGTTGTTTTCGTTTTATTGGGCGGC GTGTCGCCATTTTATTCAGACAATCGTGAACGTGCATGCGCAAATGTCAC TGAGATAAGATATACATTCCCGGACGATTTCTTCGCCGAAATTTCGGACG AAGCTAAAGACTTTATTGAAGAATTATTAGTACGCGATCAAACCTCGCGG CCTGATGCGGACGAATGTTTAAATTTCGCTTGGATGAAAATGACTGAACC AAGAAAAATACCGATCGAACTTTCTAGACTAGCTGCTTTCAATGCTAGAC GGAGATATCAATATGAGAGTAATAACCAGTCTAACGTGACGTCGTCACAG TTGCTGTCATCACCACAGAAGAAAGGATCGACCAACAGATAACACTAGCT TGGAATCTAGTCTTCTTTCTCTGTTTTTTTTAGAAAATTTATTCTCTTTC TCTGACTTTTTAATTTTTTTAGGTTTTTCTCGAGGACTTTTTTTTTTAGT TTTAACCCCTTTTAAACTTTTATTTATATGTTTTAAAGCAGTGCTTATAA ACGAAAATTACGCATAGACAAGCATATATTATACTTTTAAGAATTCTATT TGTGGAGCTGATGTAGATCTTGAATGTCTGAACCAGAACTGAACCAGTTA GAACCACTTTTGATAATCGCAGTTCTGAGAAAAATGTTTTATCTTGAAAA CTTTGAACATGTGTTGATATTTTTTAGCTGGTAGATAGAAGGTTGGTTAC TTACTATCCGTTAAATAACAAATGTCCGAATTAATATATAAATAAATAGA TATCCGAGAATTTTAGGCACTTTTTACACTTTGAAGATATTTACAAAACC AACTTTTTTTGTTAATATTTTTTTTGCGTTTTTTATTTGAACGCGATCCC TAATAAATTTTGGTTTTATTTGTTTTCGTTTGTTAGTGTCACTTTTTTTT TCTTAAGCCCAAATTTTTATTTTATGACGTTTTTTTTGTTTGTCTGTTTT TATGTAAATTATCTGTCAGACTTATAAAAAATTTGTGTTTCTTCCATAAA ATTGAAAAAATATACAATGAATATTTTAGATATTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008328XLOC_008328Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014876-exon-sc0000200-1575043694:133057..133290TCONS_00014876-exon-sc0000200-1575043694:133057..133290Clytia hemisphaericaexon
TCONS_00014876-exon-sc0000200-1575043694:132738..132788TCONS_00014876-exon-sc0000200-1575043694:132738..132788Clytia hemisphaericaexon
TCONS_00014876-exon-sc0000200-1575043694:130945..131762TCONS_00014876-exon-sc0000200-1575043694:130945..131762Clytia hemisphaericaexon
TCONS_00014876-exon-sc0000200-1575043694:130438..130720TCONS_00014876-exon-sc0000200-1575043694:130438..130720Clytia hemisphaericaexon
TCONS_00014876-exon-sc0000200-1575043694:129920..130185TCONS_00014876-exon-sc0000200-1575043694:129920..130185Clytia hemisphaericaexon
TCONS_00014876-exon-sc0000200-1575043694:128603..129726TCONS_00014876-exon-sc0000200-1575043694:128603..129726Clytia hemisphaericaexon
TCONS_00014876-exon-sc0000200-1510915933:133057..133290TCONS_00014876-exon-sc0000200-1510915933:133057..133290Clytia hemisphaericaexon
TCONS_00014876-exon-sc0000200-1510915933:132738..132788TCONS_00014876-exon-sc0000200-1510915933:132738..132788Clytia hemisphaericaexon
TCONS_00014876-exon-sc0000200-1510915933:130945..131762TCONS_00014876-exon-sc0000200-1510915933:130945..131762Clytia hemisphaericaexon
TCONS_00014876-exon-sc0000200-1510915933:130438..130720TCONS_00014876-exon-sc0000200-1510915933:130438..130720Clytia hemisphaericaexon
TCONS_00014876-exon-sc0000200-1510915933:129920..130185TCONS_00014876-exon-sc0000200-1510915933:129920..130185Clytia hemisphaericaexon
TCONS_00014876-exon-sc0000200-1510915933:128603..129726TCONS_00014876-exon-sc0000200-1510915933:128603..129726Clytia hemisphaericaexon
TCONS_00014876-exon-sc0000200-1491911889:133057..133290TCONS_00014876-exon-sc0000200-1491911889:133057..133290Clytia hemisphaericaexon
TCONS_00014876-exon-sc0000200-1491911889:132738..132788TCONS_00014876-exon-sc0000200-1491911889:132738..132788Clytia hemisphaericaexon
TCONS_00014876-exon-sc0000200-1491911889:130945..131762TCONS_00014876-exon-sc0000200-1491911889:130945..131762Clytia hemisphaericaexon
TCONS_00014876-exon-sc0000200-1491911889:130438..130720TCONS_00014876-exon-sc0000200-1491911889:130438..130720Clytia hemisphaericaexon
TCONS_00014876-exon-sc0000200-1491911889:129920..130185TCONS_00014876-exon-sc0000200-1491911889:129920..130185Clytia hemisphaericaexon
TCONS_00014876-exon-sc0000200-1491911889:128603..129726TCONS_00014876-exon-sc0000200-1491911889:128603..129726Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000200supercontigsc0000200:128603..133290 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.378599 0.365339 0.626344 1.10173 72.6547 55.1295 10.9752 10.0236 7.66761 11.3794 12.2173 4.17022 37.7224 37.0064 26.7963 33.1337 16.0208 23.488 21.4825 24.0574 9.96986 13.3579 8.83212 6.40666 7.53761 11.4532 101.309 111.885 39.7209 31.6041
Blast
BLAST of TCONS_00014876 vs. Swiss-Prot (Human)
Match: KALRN (Kalirin OS=Homo sapiens GN=KALRN PE=1 SV=2)

HSP 1 Score: 351.673 bits (901), Expect = 2.899e-101
Identity = 204/520 (39.23%), Postives = 303/520 (58.27%), Query Frame = 2
Query:  497 DPKSTFEVAPEFKILPRDVTVEVATHVKLTCTVLANPTPNVIWTKNDHIELQSGDKYQIDFKNSMC-----TLEILSTEVSDTGTYTVTASNNLGTASYSAKITVRGENKPGAPSKPFFTSVTPTSLDIRWYPPSDIDNCPVSGYTVQYQVLGSSTWQMAVAACHDTRTTVENLIAGKSYRFLVTAHNNQGNSVESEPSDPICVGDIASPRRNVHEIKWREKVENHYQICGELGRGRFSIVKRCVEKSTNKEYAAKIVRRRMVKKETVESEVAILQELNHSAIVSLHEIYDAPNGLVLVEQLLTGGRLFDHIVIMDNLTEQIAVRHVKELLLAISYLHKNNIAHLDVKPENILLTGG-ESPSVVVSDFGDAVRINKRVPYQHELSGNPEFAAPEIVSGDTISLATDMWSXXXXXXXXXXXXSPFYSDNRERACANVTEIRYTFPDDFFAEISDEAKDFIEELLVRDQTSRPDADECLNFAWMKMTEP--RKIPIELSRLAAFNARRRYQYESNNQSNVTS 2032
            +P    EVAPEF +   DVT  +   V L C V   P P + W   D   L + D     +  S C     TL+I +    D+G YT  A+N+ GT S SA + V+G   P AP++P     + TS+ +RW PPS   NC +SGYTV+Y+  GS  WQ +VA+  DT   +E+L  G  Y+F V+A N  G S+ SEPS+ + + +  +       I W+E  ++ Y    E+GRGRFSIVK+C+ K+T K+ A K V ++M KKE    E A+LQ L H   ++LH+ Y++P   +L+ +L+  GRL D+++  D L E+    ++++++ A+ YLH   +AHLD+KPEN+L+      P V + D  DAV+I+    + H L GNPEFAAPE++ G  +SL TD+WS+GV+ +V+L GVSPF  +++E  C NV  + ++FP ++F  +S+ A+DFI  +L  D   RP A  CL   W++       KIP++ SRLA F  RR++Q +     NV S
Sbjct: 2461 NPNFIQEVAPEFLVPLVDVTCLLGDTVILQCKVCGRPKPTITWKGPDQNILDT-DNSSATYTVSSCDSGEITLKICNLMPQDSGIYTCIATNDHGTTSTSATVKVQG--VPAAPNRPIAQERSCTSVILRWLPPSSTGNCTISGYTVEYREEGSQIWQQSVASTLDTYLVIEDLSPGCPYQFRVSASNPWGISLPSEPSEFVRLPEYDAAADGA-TISWKENFDSAYTELNEIGRGRFSIVKKCIHKATRKDVAVKFVSKKMKKKEQAAHEAALLQHLQHPQYITLHDTYESPTSYILILELMDDGRLLDYLMNHDELMEEKVAFYIRDIMEALQYLHNCRVAHLDIKPENLLIDLRIPVPRVKLIDLEDAVQISGHF-HIHHLLGNPEFAAPEVIQGIPVSLGTDIWSIGVLTYVMLSGVSPFLDESKEETCINVCRVDFSFPHEYFCGVSNAARDFINVILQEDFRRRPTAATCLQHPWLQPHNGSYSKIPLDTSRLACFIERRKHQNDVRPIPNVKS 2975          
The following BLAST results are available for this feature:
BLAST of TCONS_00014876 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KALRN2.899e-10139.23Kalirin OS=Homo sapiens GN=KALRN PE=1 SV=2[more]
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