TCONS_00014875 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014875
Unique NameTCONS_00014875
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1915

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014875 ID=TCONS_00014875|Name=TCONS_00014875|organism=Clytia hemisphaerica|type=transcript|length=1915bp
ACTAAGAGACCTATCTGAGTATTGAATCCAAAATTTAGAGAATTAAAACG
TCTATATCCCTTTATACTTTTAGATACAACAAACGACCATTTGAATTCGT
CATCGGAGAGAAAGCTATGATCCCAGGTTTCGAGGGAGGTATTTTAGACA
TGTGCGAAGGAGAAGTACGTCATCTTACTGTCCCATCAAAATGGGCTTAT
GGAGATAATGCTTTCGGACAATTCCCACCCAGAACAACACTTTATTTCTT
CATCCATGTTCTTTCGTTTGAACACGTGACCAATGCACCGGTCAAAGACA
ACACTTTCTTAAACATTGACCACGATGGAGATGACCAATTGTCTTCTGAT
GAGGTTCGAAGCTACTTGAAGAACGAGAAGGGAGTCAAGGACGTTGATGG
AGTTCACGGATTACGTTCCATGTTACATAACATTTTCGAAGAAGAAGACC
GAGATAGAGATGGCTTCATCACTCATCCCGAATTCTCCGGCCGTAAACAT
ACCGAATTGTAAAATGATATACCGGACACATCTCGAAACTCTATTGGTGG
AACCGGCaaaatttaaatcttttttcaatttttagttagATGATTTTAAT
CCTATATTTCGTTTTTATTACATGAATTGTTTTTCTCGGACAGACTTTTA
CTCCCTTTCACTCTCTCAAATTCTTAGGTTTTGTCAtggtaattttttat
ttatatcaaCAAAcaattgtataaaaataattagcatattttttttgaaa
tattaaatccgaaaaatttatgaaacGACTCAAGTAAATGCTAAATGACT
CAACGGTCGTAAGGGgctcattttcggttttttcaaaactgcatgtactt
ccacctcataaacatacctatttttggacttttttggaGAAGCTTAATTT
AGCCGTCATGAATGTGTCCTGTCAGATGTCCTATAATGCACCAAACTCGA
AATTCTTtggaaaatccttgaaaaatccgccattttgatgacgtcattga
cagaaaaacttgaataagttcaggtagaaaaaagatttcgagctcaaatt
tttaccagagattcaaattaaaaattaaaagcattttaaatcgaaattct
tttgattttttgatgacgtcagctttttttcgaaaaaatggtttttcagc
catttttgctgacgtaagcattttttcgattttgttttccaattttctaa
ttCGTTTTATTTATATACGTCTCTGGTCGAAATTTAAGctcgaaatcttt
tttctacctgaacttattcaagtttttctgtcaatgacgtcatcaaaatg
gcggatttttcaggaattttcccatttttttcgAGTTTGGTGCATTATAG
GACATCTGACacatgcagttttgaaaaaaccgaaaatgagcCCCTTACGA
CCGTTGAGGATTCCATCCTTCAGCCCCGATTTGAAATTTGTTGATCGAAT
CCTAAAGAATAAAATGCagcttaaaaaaattgaatatgtaattttcatat
ttttcattatttgaaaacttttaaacatttGATTAACTTAAAATATATCG
AAAATTATTTACATAATAGAATTTAATTCGAGCAAATTAtatacaacaaa
aatcaaaactaaagtataaaaatatcaacaaataaccACAGCCTCCGTTC
CACAAAGTCATTAGACTGATTTCTCCAGGCTAGTAATGTTGCCATAAATA
TGATTAACAAAGTTCTTGACGTCACTGATTTTTGGGAACAAAACTCGCGA
AAGGGATGACGGGACTTCTTGAAAGTTTCGAATGATACTCAGGATAACTG
CCGATCTCGAAAAGGATTCTGGGTGTTGCTTTCGTTCGTATTCCATGAGC
AGACATTGAACTTGCGTTTGATTGATCGAGACATCTTTGTGTAGTGATTG
CGTTTCGAAAGCTGG
Run BLAST on NCBI

protein sequence of TCONS_00014875-protein

>TCONS_00014875-protein ID=TCONS_00014875-protein|Name=TCONS_00014875-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MIPGFEGGILDMCEGEVRHLTVPSKWAYGDNAFGQFPPRTTLYFFIHVLS
FEHVTNAPVKDNTFLNIDHDGDDQLSSDEVRSYLKNEKGVKDVDGVHGLR
SMLHNIFEEEDRDRDGFITHPEFSGRKHTEL
Run BLAST on NCBI

transcript from alignment at sc0000200:125333..127517-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014875 ID=TCONS_00014875|Name=TCONS_00014875|organism=Clytia hemisphaerica|type=transcript|length=2185bp|location=Sequence derived from alignment at sc0000200:125333..127517- (Clytia hemisphaerica)
ACTAAGAGACCTATCTGAGTATTGAATCCAAAATTTAGAGAATTAAAACG
TCTATATCCCTTTATACTTTTAGATACAACAAACGACCATTTGAATTCGT
CATCGGAGAGAAAGCTATGATCCCAGGTTTCGAGGGAGGTATTTTAGACA
TGTGCGAAGGAGAAGTACGTCATCTTACTGTCCCATCAAAATGGGCTTAT
GGAGATAATGCTTTCGGACAATTCCCACCCAGAACAACACTTTATTTCTT
CATCCATGTTCTTTCGTTTGAACACGTGACCAATGCACCGGTCAAAGACA
ACACTTTCTTAAACATTGACCACGATGGAGATGACCAATTGTCTTCTGAT
GAGGTAAGCGAACTCAATCAGGGTGCAGAATGTTTTTTTGAATATGTATA
CATCCACTGACCACTTTAGCGGTATGTTAGGCTCTAAAGTGTGGAAGGAG
TTTTTTTAGAATGACGAAGAGAGCTCTAATTGAAAATTATGCTTTGTCAG
GCTAAATGGCTAAATACTTTGACCGAATCACTATACTTAAATAAAAAAAA
GGAGGACAAAAAAAACGATAAAAGAATTTCGACAGCTTAGAAATTCAATA
TCTCATTTCTCTTTCACCTGTAGGTTCGAAGCTACTTGAAGAACGAGAAG
GGAGTCAAGGACGTTGATGGAGTTCACGGATTACGTTCCATGTTACATAA
CATTTTCGAAGAAGAAGACCGAGATAGAGATGGCTTCATCACTCATCCCG
AATTCTCCGGCCGTAAACATACCGAATTGTAAAATGATATACCGGACACA
TCTCGAAACTCTATTGGTGGAACCGGCAAAATTTAAATCTTTTTTCAATT
TTTAGTTAGATGATTTTAATCCTATATTTCGTTTTTATTACATGAATTGT
TTTTCTCGGACAGACTTTTACTCCCTTTCACTCTCTCAAATTCTTAGGTT
TTGTCATGGTAATTTTTTATTTATATCAACAAACAATTGTATAAAAATAA
TTAGCATATTTTTTTTGAAATATTAAATCCGAAAAATTTATGAAACGACT
CAAGTAAATGCTAAATGACTCAACGGTCGTAAGGGGCTCATTTTCGGTTT
TTTCAAAACTGCATGTACTTCCACCTCATAAACATACCTATTTTTGGACT
TTTTTGGAGAAGCTTAATTTAGCCGTCATGAATGTGTCCTGTCAGATGTC
CTATAATGCACCAAACTCGAAATTCTTTGGAAAATCCTTGAAAAATCCGC
CATTTTGATGACGTCATTGACAGAAAAACTTGAATAAGTTCAGGTAGAAA
AAAGATTTCGAGCTCAAATTTTTACCAGAGATTCAAATTAAAAATTAAAA
GCATTTTAAATCGAAATTCTTTTGATTTTTTGATGACGTCAGCTTTTTTT
CGAAAAAATGGTTTTTCAGCCATTTTTGCTGACGTAAGCATTTTTTCGAT
TTTGTTTTCCAATTTTCTAATTCGTTTTATTTATATACGTCTCTGGTCGA
AATTTAAGCTCGAAATCTTTTTTCTACCTGAACTTATTCAAGTTTTTCTG
TCAATGACGTCATCAAAATGGCGGATTTTTCAGGAATTTTCCCATTTTTT
TCGAGTTTGGTGCATTATAGGACATCTGACACATGCAGTTTTGAAAAAAC
CGAAAATGAGCCCCTTACGACCGTTGAGGATTCCATCCTTCAGCCCCGAT
TTGAAATTTGTTGATCGAATCCTAAAGAATAAAATGCAGCTTAAAAAAAT
TGAATATGTAATTTTCATATTTTTCATTATTTGAAAACTTTTAAACATTT
GATTAACTTAAAATATATCGAAAATTATTTACATAATAGAATTTAATTCG
AGCAAATTATATACAACAAAAATCAAAACTAAAGTATAAAAATATCAACA
AATAACCACAGCCTCCGTTCCACAAAGTCATTAGACTGATTTCTCCAGGC
TAGTAATGTTGCCATAAATATGATTAACAAAGTTCTTGACGTCACTGATT
TTTGGGAACAAAACTCGCGAAAGGGATGACGGGACTTCTTGAAAGTTTCG
AATGATACTCAGGATAACTGCCGATCTCGAAAAGGATTCTGGGTGTTGCT
TTCGTTCGTATTCCATGAGCAGACATTGAACTTGCGTTTGATTGATCGAG
ACATCTTTGTGTAGTGATTGCGTTTCGAAAGCTGG

Coding sequence (CDS) from alignment at sc0000200:125333..127517-

>TCONS_00014875 ID=TCONS_00014875|Name=TCONS_00014875|organism=Clytia hemisphaerica|type=CDS|length=792bp|location=Sequence derived from alignment at sc0000200:125333..127517- (Clytia hemisphaerica)
GTTCGAAGCTACTTGAAGAACGAGAAGGGAGTCAAGGACGTTGATGGAGT
TCACGGATTACGTTCCATGTTACATAACATTTTCGAAGAAGAAGACCGAG
ATAGAGATGGCTTCATCACTCATCCCGAATTCTCCGGCCGTAAACATACC
GAATTGTAAATGATCCCAGGTTTCGAGGGAGGTATTTTAGACATGTGCGA
AGGAGAAGTACGTCATCTTACTGTCCCATCAAAATGGGCTTATGGAGATA
ATGCTTTCGGACAATTCCCACCCAGAACAACACTTTATTTCTTCATCCAT
GTTCTTTCGTTTGAACACGTGACCAATGCACCGGTCAAAGACAACACTTT
CTTAAACATTGACCACGATGGAGATGACCAATTGTCTTCTGATGAGGTTC
GAAGCTACTTGAAGAACGAGAAGGGAGTCAAGGACGTTGATGGAGTTCAC
GGATTACGTTCCATGTTACATAACATTTTCGAAGAAGAAGACCGAGATAG
AGATGGCTTCATCACTCATCCCGAATTCTCCGGCCGTAAACATACCGAAT
TGTAAATGATCCCAGGTTTCGAGGGAGGTATTTTAGACATGTGCGAAGGA
GAAGTACGTCATCTTACTGTCCCATCAAAATGGGCTTATGGAGATAATGC
TTTCGGACAATTCCCACCCAGAACAACACTTTATTTCTTCATCCATGTTC
TTTCGTTTGAACACGTGACCAATGCACCGGTCAAAGACAACACTTTCTTA
AACATTGACCACGATGGAGATGACCAATTGTCTTCTGATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008327XLOC_008327Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014875-proteinTCONS_00014875-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014875-exon-sc0000200-1575043694:127165..127517TCONS_00014875-exon-sc0000200-1575043694:127165..127517Clytia hemisphaericaexon
TCONS_00014875-exon-sc0000200-1575043694:125333..126894TCONS_00014875-exon-sc0000200-1575043694:125333..126894Clytia hemisphaericaexon
TCONS_00014875-exon-sc0000200-1510915933:127165..127517TCONS_00014875-exon-sc0000200-1510915933:127165..127517Clytia hemisphaericaexon
TCONS_00014875-exon-sc0000200-1510915933:125333..126894TCONS_00014875-exon-sc0000200-1510915933:125333..126894Clytia hemisphaericaexon
TCONS_00014875-exon-sc0000200-1491911889:127165..127517TCONS_00014875-exon-sc0000200-1491911889:127165..127517Clytia hemisphaericaexon
TCONS_00014875-exon-sc0000200-1491911889:125333..126894TCONS_00014875-exon-sc0000200-1491911889:125333..126894Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000200supercontigsc0000200:125333..127517 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.166367	0.186428	0.260904	0.11205	214.492	200.622	1765.32	1810.91	840.326	753.18	415.515	350.498	13.6817	10.7749	0.0182212	0.0193069	55.1294	53.7567	22.044	25.3901	34.1912	34.7648	7.53476	8.89158	11.7097	18.3603	0.10988	0	0.150692	0.0915041
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001179PPIase_FKBP_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Blast
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BLAST of TCONS_00014875 vs. Swiss-Prot (Human)
Match: FKB14 (Peptidyl-prolyl cis-trans isomerase FKBP14 OS=Homo sapiens GN=FKBP14 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.708e-20
Identity = 55/146 (37.67%), Postives = 82/146 (56.16%), Query Frame = 3 
Query:   78 NKRPFEFVIGEKAMIPGFEGGILDMCEGEVRHLTVPSKWAYGDNAFGQFPPRTTLYFFIHVLSFEHVTNAPVKDNTFLNIDHDGDDQLSSDEVRSYLKN--EKGVKDVDGVHGLRSMLHNIFEEEDRDRDGFITHPEFSGRKHTEL 509
            N +P  F +G    + G++ G+  MC GE R L +P    YG    G+ PP +TL F I +L    + N P    +F  +D + D +LS DEV++YLK   EK    V+  H   +++ +IF++ED D+DGFI+  EF+  KH EL
Sbjct:   71 NGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYGKEGKGKIPPESTLIFNIDLLE---IRNGPRSHESFQEMDLNDDWKLSKDEVKAYLKKEFEKHGAVVNESHH-DALVEDIFDKEDEDKDGFISAREFT-YKHDEL 211
The following BLAST results are available for this feature:
BLAST of TCONS_00014875 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FKB149.708e-2037.67Peptidyl-prolyl cis-trans isomerase FKBP14 OS=Homo... [more]
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