TCONS_00014872 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014872
Unique NameTCONS_00014872
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1879

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014872 ID=TCONS_00014872|Name=TCONS_00014872|organism=Clytia hemisphaerica|type=transcript|length=1879bp
ttttgttaaaaaattaatgttttttttttatttagctGGGTTACCAATGT
TTTCCCTAGGAAAATAGTTCAAAAGATcataaaaaacatataaaatgtTT
AAATATATTCTATTCATAGTTTTCTAAAGGTAATAGTTCGAATCCATTAT
GATCATTGTTCAAGTGAAATTACAGTGTTGTTGGAGATTTTCATAATCGA
GTTGTGTACGTGAGTGGAGATCACTCGACATAACGTTGAAGTCAAAAAAA
TCAGCGTGTGAGAGACTCATTTCCATGTTGGCTTGAGGTAAGGAATGCAT
GAAGAAGACAGGCCTTGCGTTTCCGCCTTGGAGGAAATCTTCATAATCAT
ACCACGTCCAGAGGCTAGTTGAGTTTGGGAAGTTTGGTAGGTGTGGTGAG
AAAGTGAGGTGAACGATGGCGACTTTTCTATTGCTGCCAGTTAATGGGGA
TACCCAGGTAGATGCTGTATCATTTGTTGGGAATTCAATTATCCCCATTA
TCTTGGCTTGGCCAAGCTGTGGCCACCATGGTGGATGTTGAGACATTGGT
TGATCTCCATCGAGCATTTTTTCACAAGATGTTTTCCAGCTGTCTATCGA
GGTCTTTGTCAAGTAGGCGACGCCGTCACGTTTTTCGATGCCGTCCCAAT
GTCCAAAGACGTCAGAACGGATTGTTTCAAGTCTATCTGCTTGATTGTAG
TCGTTGTAAAAGATAGTACTTTTTGATCGATCAAATGGATTGCCAGTGTA
GTTTGCATCGTTTTTCCAATGATAATACACTTTAGCTGGGTACGGGTTAT
GAGAATACTCAACAGGGATCTTTAAGGCAGACATTGAGAAATGATGTGTC
CAATTGAACATCGGCCAATCATGTAAGTTCCCACATTTGAATCCAGTAAT
AGGTATGCCATTGAGATGAAGATCCTCAATCTCAGTGAAGTGGTCCTCAA
ATGTGGCAATATAGGATAAGGAGAACATTTGAAATAATGCCAGGTTTTCA
GGATCACCTTTTACATTGGATGGTGGTGGTGCTGAAAACAATAAACGGAA
AGGTAGTCCGTTGTTTTTCCGATCAAACCATTTCCATGTTGAAGtgtttt
tgttattctttttccACCAATCAACATCGACTTCATTACTCATCCAATTC
ATTGGTGAATGTCCAACATATTCTTCTTGTGGACCAATCCAATCTCTTGA
TGGTAAACTCCAACCTAGATCAACGTCTGTCCAATCGGTACCATTTCTAG
ACATTCTAGTGAGATTGCTGTTCCCAGAGATTTGAAACCACCAGCTTTGC
TTTTCACAATTGATTAAAAGGACATTCATTAAGGCTCTGTGTACATCGTA
GGAAATTTTGGCATGACCAATCTTGCTGAATGGGAAATCTTTTTCAGCAC
CATCTCCTTGAGCTTCAGCGAATGGATGGAGCAAAGCGAATGCTGTCCAT
GATTCTGGAAGAGGCTTTCGTACAGGTTCCTCATCAGTTACGATTTTCGG
TATATGTAGTGGTGGGATAGCTTTATGACTACATTCTCCAGCAGACAGAT
ATTCAGTTAAGGTATCTGGATCAACGTTAGGAGTAATCACATTTATAAGA
TATGTGACACCTTCAGTTGCACCAGCTTCGATATGGGGTTGCCATTTGGG
GATAAAAACCTGGTCACCAGGGTATGAAAAGATGGGTTTTACAATGTCAT
GTGTTTTTAACATGAAACGTCCTTTCAATACAGTGTATTGGAAGCTGACT
GGGTGTCGCTGGCATCGATGTCCCCGACTACCTCTCAAGGCGACCATCCT
AATCACCATCTCATCTGTGATAGCGATGGTAAAAGTTGCCCGATCAAGTC
CGGTCTTTTCTAGTTTACGGTCCAGGATT
Run BLAST on NCBI

transcript from alignment at sc0000200:51186..53200-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014872 ID=TCONS_00014872|Name=TCONS_00014872|organism=Clytia hemisphaerica|type=transcript|length=2015bp|location=Sequence derived from alignment at sc0000200:51186..53200- (Clytia hemisphaerica)
TTTTGTTAAAAAATTAATGTTTTTTTTTTATTTAGCTGGGTTACCAATGT
TTTCCCTAGGAAAATAGTTCAAAAGATCATAAAAAACATATAAAATGTTT
AAATATATTCTATTCATAGTTTTCTAAAGGTAATAGTTCGAATCCATTAT
GATCATTGTTCAAGTGAAATTACAGTGTTGTTGGAGATTTTCATAATCGA
GTTGTGTACGTGAGTGGAGATCACTCGACATAACGTTGAAGTCAAAAAAA
TCAGCGTGTGAGAGACTCATTTCCATGTTGGCTTGAGGTAAGGAATGCAT
GAAGAAGACAGGCCTTGCGTTTCCGCCTTGGAGGAAATCTTCATAATCAT
ACCACGTCCAGAGGCTAGTTGAGTTTGGGAAGTTTGGTAGGTGTGGTGAG
AAAGTGAGGTGAACGATGGCGACTTTTCTATTGCTGCCAGTTAATGGGGA
TACCCAGGTAGATGCTGTATCGTTTGTTGGGANGGTGAACGATGGCGACT
TTTCTATTGCTGCCAGTTAATGGGGATACCCAGGTAGATGCTGTATCATT
TGTTGGGAATTCAATTATCCCCATTATCTTGGCTTGGCCAAGCTGTGGCC
ACCATGGTGGATGTTGAGACATTGGTTGATCTCCATCGAGCATTTTTTCA
CAAGATGTTTTCCAGCTGTCTATCGAGGTCTTTGTCAAGTAGGCGACGCC
GTCACGTTTTTCGATGCCGTCCCAATGTCCAAAGACGTCAGAACGGATTG
TTTCAAGTCTATCTGCTTGATTGTAGTCGTTGTAAAAGATAGTACTTTTT
GATCGATCAAATGGATTGCCAGTGTAGTTTGCATCGTTTTTCCAATGATA
ATACACTTTAGCTGGGTACGGGTTATGAGAATACTCAACAGGGATCTTTA
AGGCAGACATTGAGAAATGATGTGTCCAATTGAACATCGGCCAATCATGT
AAGTTCCCACATTTGAATCCAGTAATAGGTATACCATTGNCGAACATTGG
CCAATCATGTAAGTTCCCACATTTGAATCCAGTAATAGGTATGCCATTGA
GATGAAGATCCTCAATCTCAGTGAAGTGGTCCTCAAATGTGGCAATATAG
GATAAGGAGAACATTTGAAATAATGCCAGGTTTTCAGGATCACCTTTTAC
ATTGGATGGTGGTGGTGCTGAAAACAATAAACGGAAAGGTAGTCCGTTGT
TTTTCCGATCAAACCATTTCCATGTTGAAGTGTTTTTGTTATTCTTTTTC
CACCAATCAACATCGACTTCATTACTCATCCAATTCATTGGTGAATGTCC
AACATATTCTTCTTGTGGACCAATCCAATCTCTTGATGGTAAACTCCAAC
CTAGATCAACGTCTGTCCAATCGGTACCATTTCTAGACATTCTAGTGAGA
TTGCTGTTCCCAGAGATTTGAAACCACCAGCTTTGCTTTTCACAATTGAT
TAAAAGGACATTCATTAAGGCTCTGTGTACATCGTAGGAAATTTTGGCAT
GACCAATCTTGCTGAATGGGAAATCTTTTTCAGCACCATCTCCTTGAGCT
TCAGCGAATGGATGGAGCAAAGCGAATGCTGTCCATGATTCTGGAAGAGG
CTTTCGTACAGGTTCCTCATCAGTTACGATTTTCGGTATATGTAGTGGTG
GGATAGCTTTATGACTACATTCTCCAGCAGACAGATATTCAGTTAAGGTA
TCTGGATCAACGTTAGGAGTAATCACATTTATAAGATATGTGACACCTTC
AGTTGCACCAGCTTCGATATGGGGTTGCCATTTGGGGATAAAAACCTGGT
CACCAGGGTATGAAAAGATGGGTTTTACAATGTCATGTGTTTTTAACATG
AAACGTCCTTTCAATACAGTGTATTGGAAGCTGACTGGGTGTCGCTGGCA
TCGATGTCCCCGACTACCTCTCAAGGCGACCATCCTAATCACCATCTCAT
CTGTGATAGCGATGGTAAAAGTTGCCCGATCAAGTCCGGTCTTTTCTAGT
TTACGGTCCAGGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008325XLOC_008325Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014872-exon-sc0000200-1575043694:52744..53200TCONS_00014872-exon-sc0000200-1575043694:52744..53200Clytia hemisphaericaexon
TCONS_00014872-exon-sc0000200-1575043694:52223..52667TCONS_00014872-exon-sc0000200-1575043694:52223..52667Clytia hemisphaericaexon
TCONS_00014872-exon-sc0000200-1575043694:51186..52162TCONS_00014872-exon-sc0000200-1575043694:51186..52162Clytia hemisphaericaexon
TCONS_00014872-exon-sc0000200-1510915933:52744..53200TCONS_00014872-exon-sc0000200-1510915933:52744..53200Clytia hemisphaericaexon
TCONS_00014872-exon-sc0000200-1510915933:52223..52667TCONS_00014872-exon-sc0000200-1510915933:52223..52667Clytia hemisphaericaexon
TCONS_00014872-exon-sc0000200-1510915933:51186..52162TCONS_00014872-exon-sc0000200-1510915933:51186..52162Clytia hemisphaericaexon
TCONS_00014872-exon-sc0000200-1491911889:52744..53200TCONS_00014872-exon-sc0000200-1491911889:52744..53200Clytia hemisphaericaexon
TCONS_00014872-exon-sc0000200-1491911889:52223..52667TCONS_00014872-exon-sc0000200-1491911889:52223..52667Clytia hemisphaericaexon
TCONS_00014872-exon-sc0000200-1491911889:51186..52162TCONS_00014872-exon-sc0000200-1491911889:51186..52162Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000200supercontigsc0000200:51186..53200 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.481795	0.419534	0.251421	0.423591	5.00916e-05	0.506586	0.0410396	0.265337	0.36029	0.690198	0.088797	0.498753	0.183675	0.10271	0.168884	0.0776735	0.00515087	1.82854	0.22583	0.16542	7.33073	9.25512	39.6425	55.4379	38.6721	31.7336	179.955	243.61	1.66305	1.78693
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014710RmlC-like_jellyroll
IPR011051RmlC_Cupin
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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