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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014864 ID=TCONS_00014864|Name=TCONS_00014864|organism=Clytia hemisphaerica|type=transcript|length=1716bp
acgcaaaattgcttaaaagagaaaaatataataaatgttaccaaaataaa
caaagacaCAAGAAAAATCCAATCAAGATTATTCATAAaagcaaaatata
aaaaagatgcTCAAAGAAGGTTAATCAGATGACCCAAAGATCACATGAAA
AGTGAATTATAAGATTGGAAACTTGAGAAAGACCATCATCAATTTAACAA
CATCTTGTATATCTAGTCCTTATTTTTGCAACTATGTACCCTCTCCATGA
TACCTGTCTACCCTGGACCCTGTTCCCACCAAACCTTTGAAGGAAAGTTT
CACTCAATCTGATACTAACAAAGAAGCAGTAACAGTGTTTGACAATGTGT
CTGACATCTGCCAGGAGGAAATTTgccgaaaatattttctcttcatCATG
CAGTATGAGTTGATCTCACCAAAGGTTTGTGAGATAAATTTGAAACACAA
AAgcatcattttattttttgtaaaaaaacaacGTTTCGGCCTCACCCAAG
TGCCGTGATCTGCATTCATCAGCATGATATCATTCTCTTCAGACAACTGC
TTTTTATGTTTGTAATTGTGTGTCTGTTGGCTGTTTGGACAAAATCATTG
AAGTGATCCAGTTAAACATGAAGGGGAATCAGAATCCATAATTATCTCAT
TAAATGCAATCCAAATATCATACAGCTAATGACACCAGAGTAATTAATTC
ACACCTTATGAGAAGAATTTCTCAATAACCTTGATTCATCTTAAAAGCTT
ATCAATTATTAATGATAGCCATATTAACCACCAATTGATAAGAGCCAAGT
AAAATGAATCAAATGAAACGCCAATACTGGTGTTACAACAGTCCATGATC
TCTGCTTCAGAGCAAGAATACAATCAAACTCACAGTCAACAAATCTCCCA
TGGTTTGGTGTGTGATGTTTTTCACATTATCGCTTTTAAATCAGTGATTG
TAACTTTCTCACAAAATCATGTACACAATTACATTGTTTGGAAATTCTCA
AAGATATTCAACCTTCTCCAGGAATATTTTAAGAGTAATTTCAACAACGA
ATTTCAATTATTCTTTCTATTTTCCTTGAGTAATCCTAACCCAACCACAT
CTGTACCCCGTTATGCTCCTGTTCCTCAATTCTAGATGTTGTTATTTGAT
GATGGTAATTCCCAAATCCTAGAAAATGATCCCTCTAGGCTATTGGCTGA
GGACCATAGTATAATCAAATAAGAAtgtatgtaaaaacaaaaaatacatg
aaaatttgTTCAAAGCCAAAGTTGCAGATGAATCATTGTCAATCAATATA
TAAGTACAATGTCAATTTAGTACCAGAAATTTCCAGGAGAAAAATAAGCA
AGAAACATCAGCCAAAATACTTTACTTCTATGTCCAGAAAAAGTCTTCCA
TTGGGGAAAAGGTTAAAAACATCAACCTTGAGATCGAGTCCAAAAAACAA
TAGCTAAAAATCCTAAATCTGTGAAATGAAAaccagcaaaaatttgaaaa
agaactgtCAAGAAACGCCCAGTCGTACAAGCCAAGCTTATCCAAAAAGA
AGTTCATGAGTCTTGACTTTAGATTTGTGACCATTTGTATCTTTGTGTGA
TTTAGCTTCTTCTTTATCAGCTAGTGTTTCGTGACATACAGTACACATGT
AACCAGTTAGCGGAACAATATACTCTAGTGATGTAAAAGGTCAAGTGAAA
GAATAATAAATACAAT Run BLAST on NCBI transcript from alignment at sc0000200:414096..415873+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014864 ID=TCONS_00014864|Name=TCONS_00014864|organism=Clytia hemisphaerica|type=transcript|length=1778bp|location=Sequence derived from alignment at sc0000200:414096..415873+ (Clytia hemisphaerica)
acgcaaaattgcttaaaagagaaaaatataataaatgttaccaaaataaa
caaagacaCAAGAAAAATCCAATCAAGATTATTCATAAaagcaaaatata
aaaaagatgcTCAAAGAAGGTTAATCAGATGACCCAAAGATCACATGAAA
AGTGAATTATAAGATTGGAAACTTGAGAAAGACCATCATCAATTTAACAA
CATCTTGTATATCTAGTCCTTATTTTTGCAACTATGTACCCTCTCCATGA
TACCTGTCTACCCTGGACNTTAGATTCAGTCCTTATTTTTATAACTATTT
ATCCTCCCCTAATATCTCTATACCCTGGACCCTGTTCCCACCAAACCTTT
GAAGGAAAGTTTCACTCAATCTGATACTAACAAAGAAGCAGTAACAGTGT
TTGACAATGTGTCTGACATCTGCCAGGAGGAAATTTgccgaaaatatttt
ctcttcatCATGCAGTATGAGTTGATCTCACCAAAGGTTTGTGAGATAAA
TTTGAAACACAAAAgcatcattttattttttgtaaaaaaacaacGTTTCG
GCCTCACCCAAGTGCCGTGATCTGCATTCATCAGCATGATATCATTCTCT
TCAGACAACTGCTTTTTATGTTTGTAATTGTGTGTCTGTTGGCTGTTTGG
ACAAAATCATTGAAGTGATCCAGTTAAACATGAAGGGGAATCAGAATCCA
TAATTATCTCATTAAATGCAATCCAAATATCATACAGCTAATGACACCAG
AGTAATTAATTCACACCTTATGAGAAGAATTTCTCAATAACCTTGATTCA
TCTTAAAAGCTTATCAATTATTAATGATAGCCATATTAACCACCAATTGA
TAAGAGCCAAGTAAAATGAATCAAATGAAACGCCAATACTGGTGTTACAA
CAGTCCATGATCTCTGCTTCAGAGCAAGAATACAATCAAACTCACAGTCA
ACAAATCTCCCATGGTTTGGTGTGTGATGTTTTTCACATTATCGCTTTTA
AATCAGTGATTGTAACTTTCTCACAAAATCATGTACACAATTACATTGTT
TGGAAATTCTCAAAGATATTCAACCTTCTCCAGGAATATTTTAAGAGTAA
TTTCAACAACGAATTTCAATTATTCTTTCTATTTTCCTTGAGTAATCCTA
ACCCAACCACATCTGTACCCCGTTATGCTCCTGTTCCTCAATTCTAGATG
TTGTTATTTGATGATGGTAATTCCCAAATCCTAGAAAATGATCCCTCTAG
GCTATTGGCTGAGGACCATAGTATAATCAAATAAGAAtgtatgtaaaaac
aaaaaatacatgaaaatttgTTCAAAGCCAAAGTTGCAGATGAATCATTG
TCAATCAATATATAAGTACAATGTCAATTTAGTACCAGAAATTTCCAGGA
GAAAAATAAGCAAGAAACATCAGCCAAAATACTTTACTTCTATGTCCAGA
AAAAGTCTTCCATTGGGGAAAAGGTTAAAAACATCAACCTTGAGATCGAG
TCCAAAAAACAATAGCTAAAAATCCTAAATCTGTGAAATGAAAaccagca
aaaatttgaaaaagaactgtCAAGAAACGCCCAGTCGTACAAGCCAAGCT
TATCCAAAAAGAAGTTCATGAGTCTTGACTTTAGATTTGTGACCATTTGT
ATCTTTGTGTGATTTAGCTTCTTCTTTATCAGCTAGTGTTTCGTGACATA
CAGTACACATGTAACCAGTTAGCGGAACAATATACTCTAGTGATGTAAAA
GGTCAAGTGAAAGAATAATAAATACAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014864-exon-sc0000200-1491911889:414096..414363 | TCONS_00014864-exon-sc0000200-1491911889:414096..414363 | Clytia hemisphaerica | exon |
| TCONS_00014864-exon-sc0000200-1510915933:414096..414363 | TCONS_00014864-exon-sc0000200-1510915933:414096..414363 | Clytia hemisphaerica | exon |
| TCONS_00014864-exon-sc0000200-1575043694:414096..414363 | TCONS_00014864-exon-sc0000200-1575043694:414096..414363 | Clytia hemisphaerica | exon |
| TCONS_00014864-exon-sc0000200-1491911889:414426..415873 | TCONS_00014864-exon-sc0000200-1491911889:414426..415873 | Clytia hemisphaerica | exon |
| TCONS_00014864-exon-sc0000200-1510915933:414426..415873 | TCONS_00014864-exon-sc0000200-1510915933:414426..415873 | Clytia hemisphaerica | exon |
| TCONS_00014864-exon-sc0000200-1575043694:414426..415873 | TCONS_00014864-exon-sc0000200-1575043694:414426..415873 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000200 | supercontig | sc0000200:414096..415873 + |
Blast
The following BLAST results are available for this feature:
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