TCONS_00014861 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014861
Unique NameTCONS_00014861
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1598

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014861 ID=TCONS_00014861|Name=TCONS_00014861|organism=Clytia hemisphaerica|type=transcript|length=1598bp
TTNACGCGAAGAAAAAGATCGTTTAGAACGTGAACTAGCGGAGCAGCGTG
AACGCGAGAAAGAATTGGAGTTGAAACGTATTCAAGAAGAGAAGGAAAGa
caccaacaacaacaacaacaacaacgtgTCGCATCACCACCTGTTCAAGC
TCAACAAGCACAACAACAAGAACAAGAGACACCCGCATCACCGGTCACCA
ATGGCGACGAGAAACCAAGTGAAAGCGGTGCTTTGTCAGTGGGTGTTGAT
GACGTCAAAATGATGGGCATGTTGTCAAGGAAACCAACCAAAGAAGCTGG
AAACAAGAAAGCCTCTTCGAGAGTATGGAAACCATTCTTTGTTGTGTTGA
AAGCCAACGACCTCATCTTTTACCTGAACGAAAAGGAAGCTCAAAGCCGA
GCACCAACAGGCCAATCCATACCCCTCACTGGAAGTGTCGCCACAATCGC
ATCCGACTAtcacaaaaagaaaaacgttcTCCGCTTAGCGTTACCTTCAG
GAGCAGAGTATCTGCTGCAGGCTGAATCTGTTAACGAAATGACGTCATGG
ATCCAAGCGATCGGTACCGTCAAAACAGAACATGACAACAACGAAGAAAG
TGTTGAGGAAATTCAGAAACGATTGACCACTATTGGATCTCCAACGCGAC
CAACGTCCTCTTACGATCCCAACGTGACCGAAGAGGGTGCCAAGAAGAAA
CGTAAATCACTATTCGGTAATAAAAAAGGTCGAAAAGATAAATCAGCCAG
TGAACTTCAGTAGGGGGTTTGTTGTGTTATGTAGTCAGTCAGTACATTGT
GTAAATTTCATTCTTTATATTtcagttattttttatttttgtataaaGCC
AGaattctgtttttaaaactacCCACCACCATTTTCTTCTTAGTACATGT
AATTTTAAGCTGCGTTTTCACTGTTTTCCTTCAAAGTCAAAGTAATGTTC
TTTGCTTCAGCtcacaatttgaagtttttcaagaaaatcgaACTTTGAAA
CTTGTAGTGCCTTTTTACCCTACACCCTaatataaaatatttaggtacaa
TCAAAATATACTAAgctaaaaatttatattttatttacgacattatttct
tttgtatattttgttCTATTTGTGTCTAGCCACTAGTCTATATATAATGT
CTAGCCTCTCAGAGATAAAGTATTATAGATGTATTATTTGTTTATTAGCC
CGTAATATAATATTGAAGATAATACCAAACTTTTATTATGATGTTAGATA
ACCCAGTGTCAGATAGTGTCATCTGAACTTTTGTTAACTTTTCAGCTTCC
AATCCATAAATTCTGCTACTTAAAAATCTTAGAAATTCCTCGCTTCTTCT
TTCTGCCTCCAATACAAACAACGAGATCCTACTAGCTACATTCGGCAGCT
TTGTAAACATCTTCCACGTGTAGTGTTGTAGCCTTTCATTGAGACGTTAT
ATGATGCAGGGTTTTCTACTGAAAAAGATGTTTTCACATCGAAAAGTTAA
TGTAATTTATTTGTTATGTTGTCACCAGTATCACGCTTAGAGCtattgta
atattttgaaaaagactaAGATattaatttcttcatttttacagaAAA
Run BLAST on NCBI

transcript from alignment at sc0000200:301495..305033+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014861 ID=TCONS_00014861|Name=TCONS_00014861|organism=Clytia hemisphaerica|type=transcript|length=3539bp|location=Sequence derived from alignment at sc0000200:301495..305033+ (Clytia hemisphaerica)
TTNACGCGAAGAAAAAGATCGTTTAGGTAAGCTTTTAAGTACTGATACAT
TCTGAAAAGATTTTGATCCtaaatgattgattgattacAAATCTTGCACC
ACCAAATCagtctatttttcaaaacagtattaaaacttgataaagaaagt
gaaagtcgaaaatctaatttcaatttacaacattcaaaaaaatcacaaaa
ttaagaAATTACTACCAGCTATAATTACAAGTTATTAAATTTCACAAAGG
AACGCATACATCTTAAAAGAGCTCAAGGGGGGGATGAAGAGATATGCTCA
TTCAAGTCCGGTTTGAGCTCCCTTATAATAtcagtatttcttttaaataa
agctCTTCGTCGATCCGATGATTACTACTATGTAAAACTTTCATATTATC
TAGGGGGAAAatcgtcattttcagtcattatgTGAGTTGTAACCGCGGAG
GTTTTTGTCTTCACTTTTCTTATCAAATTTATCTGGCCCAGCAAGAAATG
TTTTCAAGTATTAAAACtgtcagaaagtttcaacagAATGCTGAATAGAT
TGTCACTTGAAGGAAAAGCTATATAAGCTGTAAAATTCTTAAGATATggc
ctgattttcaaatttttaaagggAGATTAAATTAAAGTAAATGTGTCCCA
GCCATAAGTCATCTAATGAATTTACTTTCCGCAGAACGTGAACTAGCGGA
GCAGCGTGAACGCGAGAAAGAATTGGAGTTGAAACGTATTCAAGAAGAGA
AGGAAAGacaccaacaacaacaacaacaacaacgtgTCGCATCACCACCT
GTTCAAGCTCAACAAGCACAACAACAAGAACAAGAGGTACATTACTTATT
ATAATGTGGATAGGTCTTTGTTTTACACAAAACCTAGAGGGTAATAACAG
TTCTCCCGCTCCATGCACAATTTACTTCATTATGAACTAAATCAAATCAG
CTTAAAAAGTTAAGCTGAAATGTGTCCTCGATTTTAAACTATACGCACTT
CTTGGGGTAAGTTGAGGCTAGTAAAAAGGTAGTAAGTTCCTTGCGTGTAA
GCTCCCTCAAGCAAAACTGGCTTCAAGCTATGGGTGTATACAGCCTCTAA
GACCGAGAAAACATACGCCTAGAGTGAGTTGATATCTCAATTATTTACAa
atctttcaaaagttttgtctCACTCCACTTCACAGACACCCGCATCACCG
GTCACCAATGGCGACGAGAAACCAAGTGAAAGCGGTGCTTTGTCAGTGGG
TGTTGATGACGTCAAAATGATGGGCATGTTGTCAAGGAAACCAACCAAAG
AAGCTGGAAACAAGAAAGCCTCTTCGAGGTAACAACTGATTTGCctttag
aaagatttttcagCATGCTCAATTTTGACTGATCGGCAAGCTAAGGATGT
CAAAACAAGATTTTACGTCAGCTGGAAGTCAGATAGCCTTACTTCTACTT
TCTTTGTTACAAGTACAGTCGCCTCTTGATAACTCGAAGTCTTTCTTTTG
AGAGAAAGTGTAGTGGCATTTTTGAATAAGCTGTACTGTCCCCCCCCCCT
CCctccaaataatttttttttaaagtcttttttataaatttcctGATAAA
TTAGTAGTTTTTCATTCTGTTTCTCCAACAAAACTTCATTTCGAGTACAT
TTTCCGGCCATATGAaacttaaattttcaatttttccccTTCCAACGAAA
GCTAGGTTGACCCTCGCAGTGTCATTAAACCTCAGCCCCATGATAAAAGA
ATAAGTAAAGGACATTATAGAGAATTTTGCCTTTACTTTTCATCAACCCA
TTCCTCTTCTTTGTGTTCGAGTTACGGAGCGTCTTCTTTGTGAGAAATTT
TTCTGATCcgtaatttttcatatttgtctTACAGAGTATGGAAACCATTC
TTTGTTGTGTTGAAAGCCAACGACCTCATCTTTTACCTGAACGAAAAGGA
AGCTCAAAGCGTAAGttgtttattcaattttttatgatGATGTTACGCTT
TGTTCATTATTCGGCGTCTGCAATATTTCGGTTATAAAGTTGTGGTAAGA
AACGGGGGCAGACCTTGACAGCCAACGGGGATGTGCCACTGGAGATTCAA
ACCCTGATAttcagatatgaatgtttggtaaatttgtcATATGTATTCAg
atcctaaaaaagggaccctgaccagcggcatgTATATCCTTGTCACCAAT
TTTGCCTGAGTGCCCCCCTCCCCCGGAATAAACCCATATGCATTATGATA
CTATCGTTTATAAtatcaaaaaagaaagtgtCCCATTTTTAAGGAAACAT
TTCTCATCATCCTAATTATTCTTTCTCTCTCCTTCCAGCGAGCACCAACA
GGCCAATCCATACCCCTCACTGGAAGTGTCGCCACAATCGCATCCGACTA
tcacaaaaagaaaaacgttcTCCGCTTAGCGTTACCTTCAGGAGCAGAGT
ATCTGCTGCAGGCTGAATCTGTTAACGAAATGACGTCATGGATCCAAGCG
ATCGGTACCGTCAAAACAGAACATGACAACAACGAAGAAAGTGTTGAGGA
AATTCAGAAACGATTGACCACTATTGGATCTCCAACGCGACCAACGTCCT
CTTACGATCCCAACGTGACCGAAGAGGGTGCCAAGAAGAAACGTAAATCA
CTATTCGGTAATAAAAAAGGTCGAAAAGATAAATCAGCCAGTGAACTTCA
GTAGGGGGTTTGTTGTGTTATGTAGTCAGTCAGTACATTGTGTAAATTTC
ATTCTTTATATTtcagttattttttatttttgtataaaGCCAGaattctg
tttttaaaactacCCACCACCATTTTCTTCTTAGTACATGTAATTTTAAG
CTGCGTTTTCACTGTTTTCCTTCAAAGTCAAAGTAATGTTCTTTGCTTCA
GCtcacaatttgaagtttttcaagaaaatcgaACTTTGAAACTTGTAGTG
CCTTTTTACCCTACACCCTaatataaaatatttaggtacaaTCAAAATAT
ACTAAgctaaaaatttatattttatttacgacattatttcttttgtatat
tttgttCTATTTGTGTCTAGCCACTAGTCTATATATAATGTCTAGCCTCT
CAGAGATAAAGTATTATAGATGTATTATTTGTTTATTAGCCCGTAATATA
ATATTGAAGATAATACCAAACTTTTATTATGATGTTAGATAACCCAGTGT
CAGATAGTGTCATCTGAACTTTTGTTAACTTTTCAGCTTCCAATCCATAA
ATTCTGCTACTTAAAAATCTTAGAAATTCCTCGCTTCTTCTTTCTGCCTC
CAATACAAACAACGAGATCCTACTAGCTACATTCGGCAGCTTTGTAAACA
TCTTCCACGTGTAGTGTTGTAGCCTTTCATTGAGACGTTATATGATGCAG
GGTTTTCTACTGAAAAAGATGTTTTCACATCGAAAAGTTAATGTAATTTA
TTTGTTATGTTGTCACCAGTATCACGCTTAGAGCtattgtaatattttga
aaaagactaAGATattaatttcttcatttttacagaAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008320XLOC_008320Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014861-exon-sc0000200-1491911889:301495..301520TCONS_00014861-exon-sc0000200-1491911889:301495..301520Clytia hemisphaericaexon
TCONS_00014861-exon-sc0000200-1510915933:301495..301520TCONS_00014861-exon-sc0000200-1510915933:301495..301520Clytia hemisphaericaexon
TCONS_00014861-exon-sc0000200-1575043694:301495..301520TCONS_00014861-exon-sc0000200-1575043694:301495..301520Clytia hemisphaericaexon
TCONS_00014861-exon-sc0000200-1491911889:302179..302330TCONS_00014861-exon-sc0000200-1491911889:302179..302330Clytia hemisphaericaexon
TCONS_00014861-exon-sc0000200-1510915933:302179..302330TCONS_00014861-exon-sc0000200-1510915933:302179..302330Clytia hemisphaericaexon
TCONS_00014861-exon-sc0000200-1575043694:302179..302330TCONS_00014861-exon-sc0000200-1575043694:302179..302330Clytia hemisphaericaexon
TCONS_00014861-exon-sc0000200-1491911889:302680..302822TCONS_00014861-exon-sc0000200-1491911889:302680..302822Clytia hemisphaericaexon
TCONS_00014861-exon-sc0000200-1510915933:302680..302822TCONS_00014861-exon-sc0000200-1510915933:302680..302822Clytia hemisphaericaexon
TCONS_00014861-exon-sc0000200-1575043694:302680..302822TCONS_00014861-exon-sc0000200-1575043694:302680..302822Clytia hemisphaericaexon
TCONS_00014861-exon-sc0000200-1491911889:303379..303454TCONS_00014861-exon-sc0000200-1491911889:303379..303454Clytia hemisphaericaexon
TCONS_00014861-exon-sc0000200-1510915933:303379..303454TCONS_00014861-exon-sc0000200-1510915933:303379..303454Clytia hemisphaericaexon
TCONS_00014861-exon-sc0000200-1575043694:303379..303454TCONS_00014861-exon-sc0000200-1575043694:303379..303454Clytia hemisphaericaexon
TCONS_00014861-exon-sc0000200-1491911889:303833..305033TCONS_00014861-exon-sc0000200-1491911889:303833..305033Clytia hemisphaericaexon
TCONS_00014861-exon-sc0000200-1510915933:303833..305033TCONS_00014861-exon-sc0000200-1510915933:303833..305033Clytia hemisphaericaexon
TCONS_00014861-exon-sc0000200-1575043694:303833..305033TCONS_00014861-exon-sc0000200-1575043694:303833..305033Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000200supercontigsc0000200:301495..305033 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.71171	5.55928	9.92795	11.3567	0.363615	0	0	0.476424	4.69644	3.70894	2.80864	1.49262	1.77575	2.16039	0.962884	1.27953	3.65761	3.97291	6.87743	3.70889	5.14772	5.84252	4.65815	2.89643	0	0.210274	3.55302	4.15687	1.68738	1.64521
Blast
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BLAST of TCONS_00014861 vs. Swiss-Prot (Human)
Match: SPTB2 (Spectrin beta chain, non-erythrocytic 1 OS=Homo sapiens GN=SPTBN1 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.829e-18
Identity = 47/106 (44.34%), Postives = 62/106 (58.49%), Query Frame = 2 
Query:  257 KMMGMLSRKPTKEAGNKKASSRVWKPFFVVLKANDLIFYLNEKEAQSRAPTGQSIP--LTGSVATIASDYHKKKNVLRLALPSGAEYLLQAESVNEMTSWIQAIGT 568
            +M G L+RK   EA NKKASSR W   + V+   ++ FY + K A S  P    +P  L  +V  +A DY KKK+V +L L  G EYL QA+   EM +WIQAI +
Sbjct: 2199 QMEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKTAASGIPYHSEVPVSLKEAVCEVALDYKKKKHVFKLRLNDGNEYLFQAKDDEEMNTWIQAISS 2304
The following BLAST results are available for this feature:
BLAST of TCONS_00014861 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPTB22.829e-1844.34Spectrin beta chain, non-erythrocytic 1 OS=Homo sa... [more]
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