TCONS_00014856 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014856
Unique NameTCONS_00014856
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length508

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014856 ID=TCONS_00014856|Name=TCONS_00014856|organism=Clytia hemisphaerica|type=transcript|length=508bp
CCGGAGAACATTCTGTGCATCGATTCACCACAAGGTTATGATGAAATCAA
ACTGATCGATTTCGGTTTAGCGAGAGATTTGTCATCCACCAAACAGTTAT
CCTGTATTTGCGGGACTCCTGAATTCGTTGGTAAGTCTATGTAGTTGCTT
TAGTCCTGCAGATAAGGatttaaatagaccttttcataaactacgttacg
aacatcacttgcctcgttttgaaattattgccatggtgatcaactcccag
cggattttattaaaactacttcctattcataaaataatttattaacacca
tggtaattgtttgaatacgaggcaagtgatgttcgtgacgtaatttatga
aaaggtctatcaatATAGCCTTAACTGATGCTTTGACGttgctttgattt
tttaagcaaGCCGGGTGGGTCACCTTCCAAAACGGATTTTGAATGTATAA
AACCAGGACCAGCAAATTTAGAATTTCTACCGTCGTTCTGGTTAAGATAA
CATTTTCC
Run BLAST on NCBI

transcript from alignment at sc0000200:105348..105855+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014856 ID=TCONS_00014856|Name=TCONS_00014856|organism=Clytia hemisphaerica|type=transcript|length=508bp|location=Sequence derived from alignment at sc0000200:105348..105855+ (Clytia hemisphaerica)
CCGGAGAACATTCTGTGCATCGATTCACCACAAGGTTATGATGAAATCAA
ACTGATCGATTTCGGTTTAGCGAGAGATTTGTCATCCACCAAACAGTTAT
CCTGTATTTGCGGGACTCCTGAATTCGTTGGTAAGTCTATGTAGTTGCTT
TAGTCCTGCAGATAAGGatttaaatagaccttttcataaactacgttacg
aacatcacttgcctcgttttgaaattattgccatggtgatcaactcccag
cggattttattaaaactacttcctattcataaaataatttattaacacca
tggtaattgtttgaatacgaggcaagtgatgttcgtgacgtaatttatga
aaaggtctatcaatATAGCCTTAACTGATGCTTTGACGttgctttgattt
tttaagcaaGCCGGGTGGGTCACCTTCCAAAACGGATTTTGAATGTATAA
AACCAGGACCAGCAAATTTAGAATTTCTACCGTCGTTCTGGTTAAGATAA
CATTTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008318XLOC_008318Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014856-exon-sc0000200-1491911889:105348..105855TCONS_00014856-exon-sc0000200-1491911889:105348..105855Clytia hemisphaericaexon
TCONS_00014856-exon-sc0000200-1510915933:105348..105855TCONS_00014856-exon-sc0000200-1510915933:105348..105855Clytia hemisphaericaexon
TCONS_00014856-exon-sc0000200-1575043694:105348..105855TCONS_00014856-exon-sc0000200-1575043694:105348..105855Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000200supercontigsc0000200:105348..105855 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.139955	0	0.0612445	0	1.30704	0.64023	2.3332	1.32441	0.811963	0	0.308143	0.55989	1.77346	0.420773	0.966538	1.70988	2.71687	1.74104	0.612008	0.185382	3.32868	1.64386	1.33531	1.27851	0.842431	1.29312	1.57546	1.57357	1.39529	1.57362
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014856 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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