TCONS_00014831 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014831
Unique NameTCONS_00014831
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length443

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014831 ID=TCONS_00014831|Name=TCONS_00014831|organism=Clytia hemisphaerica|type=transcript|length=443bp
TTCGATTGTTGCATACTTTTCCTTGTGAACTTCTCCATACACGACTTCAA
GATCACTTTATGATAAGTTATAGCACTGTTTATAAAGTTACATTCTTTTC
CCGGATTAAAACCCGAAAATTCTGTTTTCTTTTCGGAAATTCGGATTCCT
ATACCAGGAATTTTCGCCCAACTTATTAGCATTCCTATATAAACGTCATC
CAATCGGAATGGGTTTTCCCATTCAAAATAAGGGCGAATTTTCTCCACGA
CAAGTCGAGATAGAATATTCGCCATTCCAGTTGCAAAAAAGGGATAATAT
TCTGGACCCCATTCCTCTTTTGAAACATACCATTTCGAAAACGGATCTCG
AATTGGGCCATTTTTCGCCCAAATAAACCCAGCAAAGATCCGATCtttat
gtttcaataaaaacggGTCTTTGTTAATGAAGGCAAATAAATT
Run BLAST on NCBI

protein sequence of TCONS_00014831-protein

>TCONS_00014831-protein ID=TCONS_00014831-protein|Name=TCONS_00014831-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
NLFAFINKDPFLLKHKDRIFAGFIWAKNGPIRDPFSKWYVSKEEWGPEYY
PFFATGMANILSRLVVEKIRPYFEWENPFRLDDVYIGMLISWAKIPGIGI
RISEKKTEFSGFNPGKECNFINSAITYHKVILKSCMEKFTRKSMQQS
Run BLAST on NCBI

transcript from alignment at sc0000198:292200..292642

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014831 ID=TCONS_00014831|Name=TCONS_00014831|organism=Clytia hemisphaerica|type=transcript|length=443bp|location=Sequence derived from alignment at sc0000198:292200..292642 (Clytia hemisphaerica)
AATTTATTTGCCTTCATTAACAAAGACccgtttttattgaaacataaaGA
TCGGATCTTTGCTGGGTTTATTTGGGCGAAAAATGGCCCAATTCGAGATC
CGTTTTCGAAATGGTATGTTTCAAAAGAGGAATGGGGTCCAGAATATTAT
CCCTTTTTTGCAACTGGAATGGCGAATATTCTATCTCGACTTGTCGTGGA
GAAAATTCGCCCTTATTTTGAATGGGAAAACCCATTCCGATTGGATGACG
TTTATATAGGAATGCTAATAAGTTGGGCGAAAATTCCTGGTATAGGAATC
CGAATTTCCGAAAAGAAAACAGAATTTTCGGGTTTTAATCCGGGAAAAGA
ATGTAACTTTATAAACAGTGCTATAACTTATCATAAAGTGATCTTGAAGT
CGTGTATGGAGAAGTTCACAAGGAAAAGTATGCAACAATCGAA

Coding sequence (CDS) from alignment at sc0000198:292200..292642

>TCONS_00014831 ID=TCONS_00014831|Name=TCONS_00014831|organism=Clytia hemisphaerica|type=CDS|length=441bp|location=Sequence derived from alignment at sc0000198:292200..292642 (Clytia hemisphaerica)
AATTTATTTGCCTTCATTAACAAAGACccgtttttattgaaacataaaGA
TCGGATCTTTGCTGGGTTTATTTGGGCGAAAAATGGCCCAATTCGAGATC
CGTTTTCGAAATGGTATGTTTCAAAAGAGGAATGGGGTCCAGAATATTAT
CCCTTTTTTGCAACTGGAATGGCGAATATTCTATCTCGACTTGTCGTGGA
GAAAATTCGCCCTTATTTTGAATGGGAAAACCCATTCCGATTGGATGACG
TTTATATAGGAATGCTAATAAGTTGGGCGAAAATTCCTGGTATAGGAATC
CGAATTTCCGAAAAGAAAACAGAATTTTCGGGTTTTAATCCGGGAAAAGA
ATGTAACTTTATAAACAGTGCTATAACTTATCATAAAGTGATCTTGAAGT
CGTGTATGGAGAAGTTCACAAGGAAAAGTATGCAACAATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008301XLOC_008301Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014831-exon-sc0000198-1491911889:292200..292642TCONS_00014831-exon-sc0000198-1491911889:292200..292642Clytia hemisphaericaexon
TCONS_00014831-exon-sc0000198-1510915933:292200..292642TCONS_00014831-exon-sc0000198-1510915933:292200..292642Clytia hemisphaericaexon
TCONS_00014831-exon-sc0000198-1575043694:292200..292642TCONS_00014831-exon-sc0000198-1575043694:292200..292642Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014831-proteinTCONS_00014831-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000198supercontigsc0000198:292200..292642 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.151614	0.147848	0.514996	0.335896	0.817841	1.61567	1.55939	1.2774	1.53315	0.949526	2.15048	1.11072	6.05003	4.2934	3.96021	6.46726	15.8205	14.5823	2.90105	4.72226	4.83745	3.43205	0.86919	0.632176	0.488345	1.30751	4.98944	1.77495	0	0.171451
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002659Glyco_trans_31
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0008378galactosyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006486protein glycosylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006486 protein glycosylation
cellular_component GO:0016020 membrane
molecular_function GO:0008378 galactosyltransferase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014831 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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