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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014816 ID=TCONS_00014816|Name=TCONS_00014816|organism=Clytia hemisphaerica|type=transcript|length=1146bp
aggATTTCCAGTTGAAGCAAAAAGTACATGCTCTCGATCCAGAAAGTAAT
CACTGGCTTTTGGCTCAAGTCACAGAGATAGAAAAAAGTAGAATTAAAAT
CAAATGGCCTGGTTATGATAAAACGTATGATTGCTGGCTTGATCAAAAAT
TAGTAAGGGAAATCATTCCAACAAGGACCTTCAGCACCAGGAATGCAATC
AGAAAAGTTAACTTCATTGAAAGAGACCATCCTAAGTTCTTGCAATCAGG
AGATCAAATCATTGACATCAATAGCAATAATCAAATCTCGTGCATTTTAA
CAAATGATCCATTCAAATGTGAGGTTACAACAAACATCGGATCAACTGTA
TTGTACGAGCATATCATCGAGTCAAAGATAGTGTCCGAAACCGAAGATGA
GGAAgatgatgaaaaagaaattggcgAAAATAACAGCAACTACGACATCG
AAGCTAACGAAAGTGACACCGATACACCGAAAAATCACAATGAGAACGGT
GTCATCTTCTCCATTCAAAAGACCTTTATGACATCTGCACCAAAGCATCA
gctgaatgaaaaaacatcaCTGAACGATATGTCAAACAATGAAATACAAA
ccaaataaagagaaaaatttactGCCAGAAGAAGGCTCCACTAAAGAGAT
GTCGACCCAGACAGAAAATGCTCAGGAGAGTTATACAATCGAATCGTTCT
TTGCCGAAATGGTAGGAGGATTGAGAGAAACTCTAATGGCAGAGCTCAAA
GATATAAAGACTAACATGAGATCCATGGATGCCCGGCTGACAGCTCTAAC
GACAAAACGCAAAAACTCTTTTGAGCATCGTAAAGTTCAACCCAAAGCGA
AACAAGGTCTCTCATTCAAACAGCTTCTAGAAACGCCTATCGAATCGCCA
GACTATCCAGATATTTCAGAAATAGTACCATCAATATCCAAAAACCAAAC
AAATATACAAATTTATCCCAGCTCAACCTCTCTGGAAGCGTCGACAAATG
AACTACAACTTGTCAATCAAACAGATACAAGAATTTTCGAGAACGAAGAC
TTGATATATGGCTCAGAACGATCTCTCTTAACAGATTCTCCGATCATCAC
AAAACATTCGAGTGCTGTCTCTACTCCTATTCCTGGTGGATATCAA Run BLAST on NCBI protein sequence of TCONS_00014816-protein >TCONS_00014816-protein ID=TCONS_00014816-protein|Name=TCONS_00014816-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
DFQLKQKVHALDPESNHWLLAQVTEIEKSRIKIKWPGYDKTYDCWLDQKL
VREIIPTRTFSTRNAIRKVNFIERDHPKFLQSGDQIIDINSNNQISCILT
NDPFKCEVTTNIGSTVLYEHIIESKIVSETEDEEDDEKEIGENNSNYDIE
ANESDTDTPKNHNENGVIFSIQKTFMTSAPKHQLNEKTSLNDMSNNEIQT
K Run BLAST on NCBI transcript from alignment at sc0000198:420439..421780- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014816 ID=TCONS_00014816|Name=TCONS_00014816|organism=Clytia hemisphaerica|type=transcript|length=1342bp|location=Sequence derived from alignment at sc0000198:420439..421780- (Clytia hemisphaerica)
AGGATTTCCAGTTGAAGCAAAAAGTACATGCTCTCGATCCAGAAAGTAAT
CACTGGCTTTTGGCTCAAGTCACAGAGATAGAAAAAAGTAGAATTAAAAT
CAAATGGCCTGGTTATGATAAAACGTATGATTGCTGGCTTGATCAAAAAT
TAGTAAGGGAAATCATTCCAACAAGGACCTTCAGCACCAGGAATGCAATC
AGAAAAGTTAACTTCATTGAAAGAGACCATCCTAAGTTCTTGCAATCAGG
AGATCAAATCATTGACATCAATAGCAATAATCAAATCTCGTGCATTTTAA
CAAATGATCCATTCAAATGTGAGGTATGAATAATTCATTTTTTAAAGCAA
ATGCAGTTTCGTTCTAAAAATTTGGCAGTCCGTACATTCTAAAACCTTAA
AATATAATCACCCTTAATACCACCCTAGAGATATTCTTACGATTTGGTTG
ATTCTCACCCCTGATATTCTTATCTAAGACTATTCTTCTTATTAAAAAAA
GTGTGCATTTTTTTGAAAGGTTACAACAAACATCGGATCAACTGTATTGT
ACGAGCATATCATCGAGTCAAAGATAGTGTCCGAAACCGAAGATGAGGAA
GATGATGAAAAAGAAATTGGCGAAAATAACAGCAACTACGACATCGAAGC
TAACGAAAGTGACACCGATACACCGAAAAATCACAATGAGAACGGTGTCA
TCTTCTCCATTCAAAAGACCTTTATGACATCTGCACCAAAGCATCAGCTG
AATGAAAAAACATCACTGAACGATATGTCAAACAATGAAATACAAACCAA
ATAAAGAGAAAAATTTACTGCCAGAAGAAGGCTCCACTAAAGAGATGTCG
ACCCAGACAGAAAATGCTCAGGAGAGTTATACAATCGAATCGTTCTTTGC
CGAAATGGTAGGAGGATTGAGAGAAACTCTAATGGCAGAGCTCAAAGATA
TAAAGACTAACATGAGATCCATGGATGCCCGGCTGACAGCTCTAACGACA
AAACGCAAAAACTCTTTTGAGCATCGTAAAGTTCAACCCAAAGCGAAACA
AGGTCTCTCATTCAAACAGCTTCTAGAAACGCCTATCGAATCGCCAGACT
ATCCAGATATTTCAGAAATAGTACCATCAATATCCAAAAACCAAACAAAT
ATACAAATTTATCCCAGCTCAACCTCTCTGGAAGCGTCGACAAATGAACT
ACAACTTGTCAATCAAACAGATACAAGAATTTTCGAGAACGAAGACTTGA
TATATGGCTCAGAACGATCTCTCTTAACAGATTCTCCGATCATCACAAAA
CATTCGAGTGCTGTCTCTACTCCTATTCCTGGTGGATATCAA Coding sequence (CDS) from alignment at sc0000198:420439..421780- >TCONS_00014816 ID=TCONS_00014816|Name=TCONS_00014816|organism=Clytia hemisphaerica|type=CDS|length=1212bp|location=Sequence derived from alignment at sc0000198:420439..421780- (Clytia hemisphaerica)
GTTACAACAAACATCGGATCAACTGTATTGTACGAGCATATCATCGAGTC
AAAGATAGTGTCCGAAACCGAAGATGAGGAAGATGATGAAAAAGAAATTG
GCGAAAATAACAGCAACTACGACATCGAAGCTAACGAAAGTGACACCGAT
ACACCGAAAAATCACAATGAGAACGGTGTCATCTTCTCCATTCAAAAGAC
CTTTATGACATCTGCACCAAAGCATCAGCTGAATGAAAAAACATCACTGA
ACGATATGTCAAACAATGAAATACAAACCAAATAAGATTTCCAGTTGAAG
CAAAAAGTACATGCTCTCGATCCAGAAAGTAATCACTGGCTTTTGGCTCA
AGTCACAGAGATAGAAAAAAGTAGAATTAAAATCAAATGGCCTGGTTATG
ATAAAACGTATGATTGCTGGCTTGATCAAAAATTAGTAAGGGAAATCATT
CCAACAAGGACCTTCAGCACCAGGAATGCAATCAGAAAAGTTAACTTCAT
TGAAAGAGACCATCCTAAGTTCTTGCAATCAGGAGATCAAATCATTGACA
TCAATAGCAATAATCAAATCTCGTGCATTTTAACAAATGATCCATTCAAA
TGTGAGGTTACAACAAACATCGGATCAACTGTATTGTACGAGCATATCAT
CGAGTCAAAGATAGTGTCCGAAACCGAAGATGAGGAAGATGATGAAAAAG
AAATTGGCGAAAATAACAGCAACTACGACATCGAAGCTAACGAAAGTGAC
ACCGATACACCGAAAAATCACAATGAGAACGGTGTCATCTTCTCCATTCA
AAAGACCTTTATGACATCTGCACCAAAGCATCAGCTGAATGAAAAAACAT
CACTGAACGATATGTCAAACAATGAAATACAAACCAAATAAGATTTCCAG
TTGAAGCAAAAAGTACATGCTCTCGATCCAGAAAGTAATCACTGGCTTTT
GGCTCAAGTCACAGAGATAGAAAAAAGTAGAATTAAAATCAAATGGCCTG
GTTATGATAAAACGTATGATTGCTGGCTTGATCAAAAATTAGTAAGGGAA
ATCATTCCAACAAGGACCTTCAGCACCAGGAATGCAATCAGAAAAGTTAA
CTTCATTGAAAGAGACCATCCTAAGTTCTTGCAATCAGGAGATCAAATCA
TTGACATCAATAGCAATAATCAAATCTCGTGCATTTTAACAAATGATCCA
TTCAAATGTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014816-exon-sc0000198-1575043694:421458..421780 | TCONS_00014816-exon-sc0000198-1575043694:421458..421780 | Clytia hemisphaerica | exon |
| TCONS_00014816-exon-sc0000198-1575043694:420439..421261 | TCONS_00014816-exon-sc0000198-1575043694:420439..421261 | Clytia hemisphaerica | exon |
| TCONS_00014816-exon-sc0000198-1510915933:421458..421780 | TCONS_00014816-exon-sc0000198-1510915933:421458..421780 | Clytia hemisphaerica | exon |
| TCONS_00014816-exon-sc0000198-1510915933:420439..421261 | TCONS_00014816-exon-sc0000198-1510915933:420439..421261 | Clytia hemisphaerica | exon |
| TCONS_00014816-exon-sc0000198-1491911889:421458..421780 | TCONS_00014816-exon-sc0000198-1491911889:421458..421780 | Clytia hemisphaerica | exon |
| TCONS_00014816-exon-sc0000198-1491911889:420439..421261 | TCONS_00014816-exon-sc0000198-1491911889:420439..421261 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000198 | supercontig | sc0000198:420439..421780 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR016197 | Chromodomain-like |
Blast
The following BLAST results are available for this feature:
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