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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014805 ID=TCONS_00014805|Name=TCONS_00014805|organism=Clytia hemisphaerica|type=transcript|length=1819bp
TAAAATTCTGCATAAATAACCTTATCAATCTATTGGTCACAAAAAATGGG
TCCTCCTATTGGAGGTGGAGGTGGTGGAAATAAACCACCACCAAGTTTTT
TCCCAAACCAAAATGTGGATAACAACCGACAATATCCTCCACAAAATCAA
CAACAAACTTTTCAACAAAATGAACAATATAATTCTCAGCCTCCGTACAC
TAGTACACCTATTGCTGACCAAGCTGCCAATCACCAATATCAACCTCAGC
CTGAACAACGCTCTGTTAGAATGAGGCCACAACCTGCCAACACAAGGCCG
CAGTACCCTGGTTATGGGCCTATGGTATCTGGTTCTAGTATACAACAACC
ACAAGTTGTACCACCTCCTGGTCAAGAACAAcaagattttgatgaagaag
atggAAGACCTGGTTACGGACCAAGAGTCAATGTAAATGTCCATTACCAA
GAGGCCCAACAGCAACAGATTGGAAACGCAACTCCTGATATATTTACCTC
CTTTCTTGTTAATCGAATGGAAAATGATGGTTATGATGTTCCCCAACAGT
TAAGGAGGCGTCAAGGTGGAAACAATGAAAGAGAGATTGCCAAAGTTTTG
CAACGAATTGGTGACGATATGTCAAATCATTCTCAATTAAACAATTTGAT
TTCTGGAATTCGTGTCACACCTGATACAGTATACAAGACATTTTTCAGCG
TTGCATCAGAAATTTTCTCAGATGGCAACATTAACTGGGGTCGTATATGt
actttgttttattttgcttATAAACTTGCTATTCAAGTATTAAATGAAAT
GCCATTGGTTGATATTGTTATTGATTGGGTGAAACGATATGTATTTGATA
AATTGGTTGGCTGGATTCTTGCTAGAGGAGGATGGAAAGCTGTACACGAA
TATTTTGGTGCCACCCCGAAACAATTGGTTTTTGTCTTTCTGGCTGGTGT
TGCTATCAGTTCTATGTTTTGGTATTGGAAGAAATAAAATGAAGATGGTT
TTCTCGGAATTTATAATTATGCTGCTCTTGAGAAAAGATAGATTACTTGG
TACTGTAGTCTCAATCTTCAAGTTCGAAAAATGTTCGGTAAGCTCGGATA
CTTGTCATTAGTTCTTTGTATCAAATTCAAACTTTGTCATACAGTTTAcc
tctctctaatttgatcttcTGGGCAGTTCTAGGGACGAAcatattttttc
gaattagaaaaaaaatcaaattaaagagaggatttttgtaaaatttaatt
ttaaacattttcaggTTCATATCAAAGATAAAGTTTTTAGCTTTGTCCTG
GAAATATTCTTTTCGATCGTAAGTTTTAGGATAATGATAAATTTGTGCCT
TGTTTtagaaaactaaatttttatttctacaTTCTAGCTGACAGAAAGAC
ATTTTTAAAGGATTTCTTGAATGTATTTTTTATGATATAATCATGATTCt
cagaatattttttttattttaaaagtttggAATTTTCTTCGGACTCAGGA
AAAAGGTTTTTGAtataactttcaatttttttcactgCCATAGTGAATAC
CTTAGCTTTGGTTGCTTGAATACTAAAAGCCCTCGGTGGGGGTGTGTGTG
AGCCATAAAGGTCCCCCTTTTCATACCctcgaaagtccctcaaaggggta
caaaaaccattaaaaagcaaattgagtctctgtaagggttccaaaattac
gaaaatccaAAATCAACTCCCTCAAGAGGTCATAAATTCTGGGGGaatag
tctctctaaaggttaacaaaacgtcaaaaaattgacaaaacttttgaaat
tcagTCTTTCTAAGGGTCG Run BLAST on NCBI transcript from alignment at sc0000198:135475..137954- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014805 ID=TCONS_00014805|Name=TCONS_00014805|organism=Clytia hemisphaerica|type=transcript|length=2480bp|location=Sequence derived from alignment at sc0000198:135475..137954- (Clytia hemisphaerica)
TAAAATTCTGCATAAATAACCTTATCAATCTATTGGTCACAAAAAATGGG
TCCTCCTATTGGAGGTGGAGGTGGTGGAAATAAACCACCACCAAGTTTTT
TCCCAAACCAAAATGTGGATAACAACCGACAATATCCTCCACAAAATCAA
CAACAAACTTTTCAACAAAATGAACAATATAATTCTCAGCCTCCGTACAC
TAGTACACCTATTGCTGACCAAGCTGCCAATCACCAATATCAACCTCAGC
CTGAACAACGCTCTGTTAGAATGAGGCCACAACCTGCCAACACAAGGCCG
CAGTACCCTGGTTATGGGCCTATGGTATCTGGTTCTAGTATACAACAACC
ACAAGTTGTACCACCTCCTGGTCAAGAACAACAAGATTTTGATGAAGAAG
ATGGAAGACCTGGTTACGGACCAAGAGTCAATGTAAATGTCCATTACCAA
GAGGCCCAACAGCAACAGATTGGAAACGCAACTCCTGATATATTTACCTC
CTTTCTTGTTAATCGAATGGAAAATGATGGTTATGATGTTCCCCAACAGT
TAAGGAGGCGTCAAGGTGGAAACAATGAAAGGTATTTTAATAAAGTGATT
ATTAGAAAACACAAAAAATTTATCCTTCCTTTGTAAGTTGAATAATCCTT
GGAATTAAAAGAAAGATGCTTTCATTAGAGCACAAATTCTTTTTTATTGC
ATTTAGGCAAAAAAGAAATGATTAATTTATTAAATGATTAGGAAATGGAC
TCTAAAATTTGGTGACTGAATTCTTGAACTGCGAATAATTTCTTTTCAGA
GAGATTGCCAAAGTTTTGCAACGAATTGGTGACGATATGTCAAATCATTC
TCAATTAAACAATTTGATTTCTGGAATTCGTGTCACACCTGATACAGTAT
ACAAGACATTTTTCAGCGTTGCATCAGAAATTTTCTCAGATGGCAACATT
AACTGGGGTCGTATATGTACTTTGTTTTATTTTGCTTATAAACTTGCTAT
TCAAGTATTAAATGAAATGCCATTGGTTGATATTGTTATTGATTGGGTGA
AACGATATGTATTTGATAAATTGGTTGGCTGGATTCTTGCTAGAGGAGGA
TGGGTAAGGTTTATGTTTTGCCATTTTTGGCCTGGTTCAAATAGTGAGAG
GCACCCCCCAACCCTTACCTGAGAAAGATCACTATGCCTGCACTGGGTAA
CCCCCACATGAAAAAAATGTCATCCCCAGCTGCATAGGTTTACTCCCACC
TGAAATTTCTCATCAGCCTAACCCCCACCTTCTTTTAAATATCAATTTCC
CATTTGAAATGAAAATTATTATAGTATTGCATAAACAAAAATTTTAAAGA
ACCACATTTTTGCTCGAGATCATATATATTGAGAATTTATTGTATTTTAC
GTTTATTTAAGAATTCAGAGTTAAGGCGAGGCTTTGCAAATTTTCATATT
CCTTTCATCAGAATAACTTTTTCAGTTCGAAAATCCTCGCACTTTATTTA
ATTCGATGAATTATATAAGTATTTTTGTTTTCTTTTTAAATTACAGAAAG
CTGTACACGAATATTTTGGTGCCACCCCGAAACAATTGGTTTTTGTCTTT
CTGGCTGGTGTTGCTATCAGTTCTATGTTTTGGTATTGGAAGAAATAAAA
TGAAGATGGTTTTCTCGGAATTTATAATTATGCTGCTCTTGAGAAAAGAT
AGATTACTTGGTACTGTAGTCTCAATCTTCAAGTTCGAAAAATGTTCGGT
AAGCTCGGATACTTGTCATTAGTTCTTTGTATCAAATTCAAACTTTGTCA
TACAGTTTACCTCTCTCTAATTTGATCTTCTGGGCAGTTCTAGGGACGAA
CATATTTTTTCGAATTAGAAAAAAAATCAAATTAAAGAGAGGATTTTTGT
AAAATTTAATTTTAAACATTTTCAGGTTCATATCAAAGATAAAGTTTTTA
GCTTTGTCCTGGAAATATTCTTTTCGATCGTAAGTTTTAGGATAATGATA
AATTTGTGCCTTGTTTTAGAAAACTAAATTTTTATTTCTACATTCTAGCT
GACAGAAAGACATTTTTAAAGGATTTCTTGAATGTATTTTTTATGATATA
ATCATGATTCTCAGAATATTTTTTTTATTTTAAAAGTTTGGAATTTTCTT
CGGACTCAGGAAAAAGGTTTTTGATATAACTTTCAATTTTTTTCACTGCC
ATAGTGAATACCTTAGCTTTGGTTGCTTGAATACTAAAAGCCCTCGGTGG
GGGTGTGTGTGAGCCATAAAGGTCCCCCTTTTCATACCCTCGAAAGTCCC
TCAAAGGGGTACAAAAACCATTAAAAAGCAAATTGAGTCTCTGTAAGGGT
TCCAAAATTACGAAAATCCAAAATCAACTCCCTCAAGAGGTCATAAATTC
TGGGGGAATAGTCTCTCTAAAGGTTAACAAAACGTCAAAAAATTGACAAA
ACTTTTGAAATTCAGTCTTTCTAAGGGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014805-exon-sc0000198-1575043694:137374..137954 | TCONS_00014805-exon-sc0000198-1575043694:137374..137954 | Clytia hemisphaerica | exon |
| TCONS_00014805-exon-sc0000198-1575043694:136852..137155 | TCONS_00014805-exon-sc0000198-1575043694:136852..137155 | Clytia hemisphaerica | exon |
| TCONS_00014805-exon-sc0000198-1575043694:135475..136408 | TCONS_00014805-exon-sc0000198-1575043694:135475..136408 | Clytia hemisphaerica | exon |
| TCONS_00014805-exon-sc0000198-1510915933:137374..137954 | TCONS_00014805-exon-sc0000198-1510915933:137374..137954 | Clytia hemisphaerica | exon |
| TCONS_00014805-exon-sc0000198-1510915933:136852..137155 | TCONS_00014805-exon-sc0000198-1510915933:136852..137155 | Clytia hemisphaerica | exon |
| TCONS_00014805-exon-sc0000198-1510915933:135475..136408 | TCONS_00014805-exon-sc0000198-1510915933:135475..136408 | Clytia hemisphaerica | exon |
| TCONS_00014805-exon-sc0000198-1491911889:137374..137954 | TCONS_00014805-exon-sc0000198-1491911889:137374..137954 | Clytia hemisphaerica | exon |
| TCONS_00014805-exon-sc0000198-1491911889:136852..137155 | TCONS_00014805-exon-sc0000198-1491911889:136852..137155 | Clytia hemisphaerica | exon |
| TCONS_00014805-exon-sc0000198-1491911889:135475..136408 | TCONS_00014805-exon-sc0000198-1491911889:135475..136408 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000198 | supercontig | sc0000198:135475..137954 - |
Blast
BLAST of TCONS_00014805 vs. Swiss-Prot (Human)
Match: BAX (Apoptosis regulator BAX OS=Homo sapiens GN=BAX PE=1 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 4.838e-27 Identity = 60/177 (33.90%), Postives = 104/177 (58.76%), Query Frame = 1
Query: 463 QQIGNATPDIFTSFLVNRMENDGYDVPQ-QLRRRQGGNNEREIAKVLQRIGDDMSNHSQLNNLISGIRVTPDTVYKTFFSVASEIFSDGNINWGRICTLFYFAYKLAIQVL-NEMP-LVDIVIDWVKRYVFDKLVGWILARGGWKAVHEYFGATPKQLVFVFLAGVAISSMFWYWKK 984
+QI + F+ +R G + P+ L + +++++ L+RIGD++ ++ +L +I+ V D+ + FF VA+++FSDGN NWGR+ LFYFA KL ++ L ++P L+ ++ W ++ ++L+GWI +GGW + YFG Q V +F+AGV +S+ WKK
Sbjct: 17 EQIMKTGALLLQGFIQDRAGRMGGEAPELALDPVPQDASTKKLSECLKRIGDELDSNMELQRMIAA--VDTDSPREVFFRVAADMFSDGNFNWGRVVALFYFASKLVLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGWDGLLSYFGTPTWQTVTIFVAGVLTASLT-IWKK 190
The following BLAST results are available for this feature:
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