TCONS_00014750 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014750
Unique NameTCONS_00014750
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length980

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014750 ID=TCONS_00014750|Name=TCONS_00014750|organism=Clytia hemisphaerica|type=transcript|length=980bp
GTGGCATTTTCTTCCCAGGCGTTGGTTTGTATATGAATAAATACCGCCTT
CCCCTTCaccatagttaaaatttggcacCAGTTGTTCGATTATAGACCAT
GTATATATAATTTGGTATCTTTCGCGTCTTCTTTTGAGACTGTACATATT
GAGGTGtttgagcttctcccaataATTCAAATTGGGTGGAAGTTGGATCC
CTTTTATAAAGGATTTTTGCAGATACTCCAGTTCTTGCATCAGGGATCGC
TTTGTAGGAGCTGGGAGCAGTATTCCAGATGTTGAAGTACCAATGTCTTC
CAAAGAGTGATCATTACTGATTTATCTCTGGACTTGAAGGTTCTGTATAT
CCAGGCAGTTATACCCTTGACTCTGTCAGTGATCGTTTGAATGTGCATTT
CATATGACAGGTTGTTTCAGGATACCCAGGTCTTTCACTgcactttttat
ttcgattggcTGCTGTACATCTGATTTGTAGACTGAGTGTACTTTCAGTT
GTTCACTTTTTCCGTATGCAAtgtgttcaaacttttttccattgagCTCC
ATATTgttgatggatgtccagtcataGACAACGTCTAGATCATCTTGAAG
CAGACTCACATCTGCAGCGCAAGATATTGCCTTCATAAGTCTTGTGTCGT
CAGCAAAAGATGAGAGGATGGAATGTTTAATCTTATCGTTTATGTCACTG
ATCATTACCAGAAACAAGAGGGGTCCCAGAACTGAGCCTTGTGGAACTCC
GCTTGTAACTTTCGCTTCATCTGATAGGAACGTGTTTATGGAAACTTTTT
GGTATCTCTCAGTAAGGAAGGATTGTATCCAGTTTAATAGTTGTCCTTTG
ATTCCATTGATTTTTAGCTTGTGTAGCAAGATGTGATGGTCCACCTGGTC
AAAGGCCTTGCTGAAGTCAAGGTAGATtacatcaacattttcattgtttt
gtagGTGAGATATCAGTCTTTCTACATGAG
Run BLAST on NCBI

protein sequence of TCONS_00014750-protein

>TCONS_00014750-protein ID=TCONS_00014750-protein|Name=TCONS_00014750-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
HVERLISHLQNNENVDVIYLDFSKAFDQVDHHILLHKLKINGIKGQLLNW
IQSFLTERYQKVSINTFLSDEAKVTSGVPQGSVLGPLLFLVMISDINDKI
KHSILSSFADDTRLMKAISCAADVSLLQDDLDVVYDWTSINNMELNGKKF
EHIAYGKSEQLKVHSVYKSDVQQPIEIKSAVKDLGILKQPVI
Run BLAST on NCBI

transcript from alignment at sc0000197:288555..289534

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014750 ID=TCONS_00014750|Name=TCONS_00014750|organism=Clytia hemisphaerica|type=transcript|length=980bp|location=Sequence derived from alignment at sc0000197:288555..289534 (Clytia hemisphaerica)
CTCATGTAGAAAGACTGATATCTCACctacaaaacaatgaaaatgttgat
gtaATCTACCTTGACTTCAGCAAGGCCTTTGACCAGGTGGACCATCACAT
CTTGCTACACAAGCTAAAAATCAATGGAATCAAAGGACAACTATTAAACT
GGATACAATCCTTCCTTACTGAGAGATACCAAAAAGTTTCCATAAACACG
TTCCTATCAGATGAAGCGAAAGTTACAAGCGGAGTTCCACAAGGCTCAGT
TCTGGGACCCCTCTTGTTTCTGGTAATGATCAGTGACATAAACGATAAGA
TTAAACATTCCATCCTCTCATCTTTTGCTGACGACACAAGACTTATGAAG
GCAATATCTTGCGCTGCAGATGTGAGTCTGCTTCAAGATGATCTAGACGT
TGTCtatgactggacatccatcaacAATATGGAGctcaatggaaaaaagt
ttgaacacaTTGCATACGGAAAAAGTGAACAACTGAAAGTACACTCAGTC
TACAAATCAGATGTACAGCAgccaatcgaaataaaaagtgcAGTGAAAGA
CCTGGGTATCCTGAAACAACCTGTCATATGAAATGCACATTCAAACGATC
ACTGACAGAGTCAAGGGTATAACTGCCTGGATATACAGAACCTTCAAGTC
CAGAGATAAATCAGTAATGATCACTCTTTGGAAGACATTGGTACTTCAAC
ATCTGGAATACTGCTCCCAGCTCCTACAAAGCGATCCCTGATGCAAGAAC
TGGAGTATCTGCAAAAATCCTTTATAAAAGGGATCCAACTTCCACCCAAT
TTGAATtattgggagaagctcaaaCACCTCAATATGTACAGTCTCAAAAG
AAGACGCGAAAGATACCAAATTATATATACATGGTCTATAATCGAACAAC
TGgtgccaaattttaactatggtGAAGGGGAAGGCGGTATTTATTCATAT
ACAAACCAACGCCTGGGAAGAAAATGCCAC

Coding sequence (CDS) from alignment at sc0000197:288555..289534

>TCONS_00014750 ID=TCONS_00014750|Name=TCONS_00014750|organism=Clytia hemisphaerica|type=CDS|length=579bp|location=Sequence derived from alignment at sc0000197:288555..289534 (Clytia hemisphaerica)
CATGTAGAAAGACTGATATCTCACctacaaaacaatgaaaatgttgatgt
aATCTACCTTGACTTCAGCAAGGCCTTTGACCAGGTGGACCATCACATCT
TGCTACACAAGCTAAAAATCAATGGAATCAAAGGACAACTATTAAACTGG
ATACAATCCTTCCTTACTGAGAGATACCAAAAAGTTTCCATAAACACGTT
CCTATCAGATGAAGCGAAAGTTACAAGCGGAGTTCCACAAGGCTCAGTTC
TGGGACCCCTCTTGTTTCTGGTAATGATCAGTGACATAAACGATAAGATT
AAACATTCCATCCTCTCATCTTTTGCTGACGACACAAGACTTATGAAGGC
AATATCTTGCGCTGCAGATGTGAGTCTGCTTCAAGATGATCTAGACGTTG
TCtatgactggacatccatcaacAATATGGAGctcaatggaaaaaagttt
gaacacaTTGCATACGGAAAAAGTGAACAACTGAAAGTACACTCAGTCTA
CAAATCAGATGTACAGCAgccaatcgaaataaaaagtgcAGTGAAAGACC
TGGGTATCCTGAAACAACCTGTCATATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008254XLOC_008254Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014750-proteinTCONS_00014750-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014750-exon-sc0000197-1491911889:288555..289534TCONS_00014750-exon-sc0000197-1491911889:288555..289534Clytia hemisphaericaexon
TCONS_00014750-exon-sc0000197-1510915933:288555..289534TCONS_00014750-exon-sc0000197-1510915933:288555..289534Clytia hemisphaericaexon
TCONS_00014750-exon-sc0000197-1575043694:288555..289534TCONS_00014750-exon-sc0000197-1575043694:288555..289534Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000197supercontigsc0000197:288555..289534 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.79511	4.58666	6.71505	4.29781	3.36007	2.69489	3.76782	5.3952	3.04214	4.09258	4.11743	4.78683	3.57053	2.76122	1.87116	1.66814	1.37177	1.67307	3.32624	4.15065	2.92106	3.17247	0.751987	1.70884	3.71464	4.62916	5.36784	4.55298	5.42166	4.79652
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014750 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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