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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014704 ID=TCONS_00014704|Name=TCONS_00014704|organism=Clytia hemisphaerica|type=transcript|length=5025bp
ggaaatttcaaaattaaataccCTACTGTAATACGCTACGTAAGAAAAAT
TCTGGCACAGAATAATAATTTGTATACAACAATGATAATACTTGATGATA
ATTTTcgtttttatgaaaataatatatacaAAGAAAGGTTCCTACAGTAC
AATAAATGTAAAGAAATTTAATACTAACAAATGACAAATAATGAAACAAA
TTAGAAGACATAAAATCGAGATTCTAAAtctgttttctgtttttgttgaG
TCAGGTTAAGTATCTTAATAACCAACGTGACTTCTGTTTCATATCCAAAA
TATCAAACTACACCACTTTATTTTGCTTTATTGAGTgtcaataaaatgaa
attcatcTAATACCAGCAACGTAGACCCTTACCCCATAAGACCAAGTAGT
GATCTCAAAATTAAAGGAAGATTGAAAgtcttcagttgatttatagTGTA
ATTAGCGTGGACAGCTCGTTTGGCGAAAGTGAACAGAGAATTGTGTTTCT
CCTTTTCTTCACAGAAAAAATACACCGACACTTCAGCTTGAGCCATGAGT
AAAGTATGACACGAATCTAAAGTACTGAGGAAGATTTCTTCCCCAGACCA
ATTGAGGATAATTTCTTGACTTACTCTATCGATAATGTTTTCCATGTTTA
CGTCAAATGATTGTAAAATAACTTTCTGAAACGGACAAAGGACGTATAAC
TTTTCATCTGTCGATAGATAGACTCGAATCTTTGTGAAATAATGAACTTT
AAACGCTCCGCACTCAATTTGGATGTCGAGATCTGTTTTAACATCCCAAT
CAATGATTAGTTTTGTGGTGGAACTCTCTCGATCAATTTCGTAAGCGTTG
acgttgaaatctgaataacaGGTGAAATCAAATCTTGTTTTGGCGTACTG
ATCAAATCAGCTTGCAAAACAAATACATCTTCATCATAATGAACAGTTAT
CGTTTTCATTCGAGTTAAATCGTATACAATAAGGATTCCAGTGCTTTCAT
CGCTGTCAAGTTTCACCAAATAGAGATCTTCTGAACTGTTGAATGTAGTA
TAATACATTTTACCGAAAGCATCACTTTTGAAAGTTCGGAAAGGCTCACA
ATTTCCAGATGGATCGAATTTGAAAATGATGCATTGGAAAACAAAAGGGT
CGTCTTTACTGTAGATCAAAGCCATGAGGTTATTGCTGGGAGAGAATGCA
CAATAATACACAAGCATGTATGGACCTCCAAGTGTCGTCAAATTCTTATA
AACCAACTCGTCTTTTTCAATGTGGTATATTTTCATTGTGGTCTTTCGAG
GATCGCTAGGGGTCATTTCGTAAGTACGTTGATATGTTGGGTACtgttcc
atcatttgttcggAATATTTAGTTAATCTTTCTTGGACAAAACCAACTGC
TATCGATTGATCGTTAGATAAAGCAAACGGTTTAGATGGTTCACCTGATA
ATAGCAACAGCCCCGACTTACTAAACGACTCACAATCAAGCGAAGTTGCA
CAAAAACCAAAAGGTTTTTCAGTTATGTAAAGAACAATCTCTCCTTGAGA
GCAGCCAAATTTTCTGCTGAGACCAGGGTAAAACCTTTTGATTGGTTTAT
TAGAAtgaatattgatttgattccaaGGAATAATGTATTTCTTGGAACAG
TTCTTCGCCTCTTCTTGTGTAAACGTTGTTGCCAACATTTTGGAATTAAT
ATTTCTAACACTCTATAAAAGCATATGGTCAATAAGTTagtcaaaaatat
tattattcaaaattAGATCTTTGGATTTCAGGGAGAACAAAAAGACATAC
GAgtcaaaagaaaacagaaaagcgAGTGGTATACTTTCGAGAACCTTTAA
AAAGAGTTAAGAGTTAATTAACTGGTATGACTAGTGGTCAATGCAGGGCT
ACAAAACAGCTGAAATAAGGCTGGTTACGTCAAAAAGGTCTAAACTTTCC
TTAAAATGGTCTTGGAAATGTCAATATTTGCCAAAAAAAGAAGTTTCGCT
GCCAAAAATACAATGCAATAAGCTACTAACTTATAGTCAAAGTATTTAGT
TGAAATAAATCATCATAGTTGGAATAAAATACTTTCCGTTATTTTTCGTA
GATTGGAAGTGTTTAATCGTCAAAATGTTTGATCAAAATACAAACTAAAT
ATCACAAGTCATATGAAAGCTTGACGGCAAGAAATGTTCTCCAAAAACAC
ATTTACAAGACGCCAAGCATTTCTTTCAATGAACGAGGTAGATTAAAATT
CTCCAACTGACTTTTATTAAAGTTAGAAAGAACAGACCTCTTTGCAAGTT
GCAACAAAGAATTCTTCGGTGAGTCATCTTCATTATAGTGAAACATGGTG
AGCTTGTATCGATGTTTAAAAGCACCGTGCATTAACTGACAAAATACAAA
TATTTCTTCACCAGAACAATTAATGGCTATTTTTCGATGCTCAATGAAAA
GGCTTCTCTTCTGGCAATAAAGGAAACTTCTTGATAATTTTGTCTTCAAA
TGGACATAAAATGTAAAGCTTTTCATTGGACGATAGAAAGATACGTATTG
TTGTATTAAAATAAACTTTCATTTCAACATCGAATGGTTCATCGATAAAA
TTGCCAGTGATTAGTTTCATACTGCTGACTTTAGAATGTGCACCAGTGAC
CAAATCAAGCTTGTAACCAGTTATCCTGGTATCGCGCAAGTCCAACACGA
AAACAAAAGGACCTTGATTGGTACTTACCAAGAAAGATTCTACAAGAAAC
CCTTGACTTTCGTAGGAAATATAATTTAGCTTCTTTTTGTCGATGTCATA
AACAGAAATGCTCTCTGTATCAACATGACGTGGTATTCGGTTAATGTTCA
CCATTAACAGATTCTCATGTTCATTGAATGATGAACTACATACATACTTA
ACCCTCTCATACCCAAGGCTCTGTATACGAAAGGTTCGATGTTGTTTAAA
GCCACCTGATTTTGTGAATTGAAAGATCTTACAGATGATGTGCTTAGAAG
ATTTTGTTGTTCGGTAGAGTACAGAAAGCAACTTATTATTGGGCGAGATT
GTTGCAGAAAAGAAACAATCAATGGTCTCAATCCCCAAAGATAAGGATGT
TTCAGTTAATGAACGTTTTTCGAAATCGAAAATATTCATATTCATCAAAC
TTCCACTTTGTGGAGATTTTCTGGATTTCTTCCTTGGCAACGGTTTAGAA
AAACCAATAGCTAAGTTCATATCACCAGAAAACGCTGTAAAATCAAAATT
CTCAACATTCCAACCATCAAAATGAAGAGCtttgaaagaattttcattca
atttaGTGGAGTAAAACGTTTTCAGCCTTTCATCGTAAAGGATAAGCCTA
CCATTCTGACATCGAAATATTGTTGGATGAAAAGGGTCAGGGACTGGTAG
GTTGTAAGTGTTGACATGGTGCTCGTTTGGAGTAGCTTTTACTTCATTCG
ATGGTATAATATAATGCCTTGGTCTCAAAGAACCTTCTGTTCCTATTGAT
ATTTTATCTCCCATTTTGATTggttattctttcttttttcctcTAAAAAT
AATGAAACCAAAAGTCAGATTTAAAGATGATAATTGTAAATAGTCGAatg
tgcgcaacgcactgggctcaacttcagtggcttcaaattattcataggcc
caattgtagacccccagatattcacccaacgaacaagtgtgccaaatttc
aaccaaatccgaccattctGGAGGCATGTAGgctgctccaaagctttagc
ctcgttttggcaaaaaactcgtccccaggccccaaaaatcaaaattgaaa
aatgcaaaaagcacccccagatattcacccaaggaacaaatgtgcaaaat
ttcagccaaatcgaacaattttttattaagtctccaggctgccccaaagt
tttaacctcgttttggcgaaaaactcgtccccagaccccaaaaatcaaaa
ttttcaaaaattaaaaagaacacCTCCAGATATTCACTCAAGGAAcaaat
gtgccaaatttcagccaaatccgaccatttttgaagtctccaggctgccc
caaagctttagcctcgttttggcaaaaaactcgccCCCagtccccaaaaa
tcaaaattttcaaaaaatgaagaaaacacccccagatattcacccaagga
acaagtgtgccaaatttcagccaaatcaaacaatttttgaagtctccagg
ctgccccaaagttttgggacatacacagacagacagacagacagacagac
acacacacattctcagatccTAACTCGACTGAAGTTGAGAGCATCAATTT
GGATtcggataaatatttttgttcaaacaaaTGGACATTTTGAGGTGACA
AGACAAGAGCACTGAATCATTTCTATCGTTGGCGCCGCCTATTCTTTCTT
TGTCTCATAGTAAGGGATGCTTTATATGCTCCTAACCTATGGTATCGTAA
ACTGTAATGTCTTCGGTGTGAAATTCGTAAAACACAGTAGCATATTCAAC
AAAACCTCTTTCAGCCTTTTTTTGTCTACAACATGGTAATTCTCTGAAAC
CGTGAGATGAAAGAAAGGTATAGATCATTAGGTAATAATCTCGCAATGTA
CGGTGTGTCCGAAAAAAGCGGCCCAATTTTTATATAacgtaaaatcctca
aaactcttTATCTAAACTGGGCTTAGAATAATTGAAACAAGATTAAAATT
CTCTGTTCATTCAGAAGatgtttttaaaacaatacttcttcaaattttgc
gaataCTTTTGATCATTTGAACTAAATAACAGAGAAAACTtaccaatcaa
atcaaaaatgaaacttcCTGAACAATAGATCTTGATAAAAAGGTTACTCC
ATTTCTCTTGAACAAACTATAgccttttctttataaaagtaACAAACCCC
ATAAGTTTGTTCCGAGTTGACATTGATCCTTGACCAAGggtgtttcttct
ttttataaaaatatgtatAGTATGATGTTTATTGTGCATTTTAGATTtga
cttttatttattttttatagctaaa Run BLAST on NCBI transcript from alignment at sc0000197:373845..378938+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014704 ID=TCONS_00014704|Name=TCONS_00014704|organism=Clytia hemisphaerica|type=transcript|length=5094bp|location=Sequence derived from alignment at sc0000197:373845..378938+ (Clytia hemisphaerica)
ggaaatttcaaaattaaataccCTACTGTAATACGCTACGTAAGAAAAAT
TCTGGCACAGAATAATAATTTGTATACAACAATGATAATACTTGATGATA
ATTTTcgtttttatgaaaataatatatacaAAGAAAGGTTCCTACAGTAC
AATAAATGTAAAGAAATTTAATACTAACAAATGACAAATAATGAAACAAA
TTAGAAGACATAAAATCGAGATTCTAAAtctgttttctgtttttgttgaG
TCAGGTTAAGTATCTTAATAACCAACGTGACTTCTGTTTCATATCCAAAA
TATCAAACTACACCACTTTATTTTGCTTTATTGAGTgtcaataaaatgaa
attcatcTAATACCAGCAACGTAGACCCTTACCCCATAAGACCAAGTAGT
GATCTCAAAATTAAAGGAAGATTGAAAgtcttcagttgatttatagTGTA
ATTAGCGTGGACAGCTCGTTTGGCGAAAGTGAACAGAGAATTGTGTTTCT
CCTTTTCTTCACAGAAAAAATACACCGACACTTCAGCTTGAGCCATGAGT
AAAGTATGACACGAATCTAAAGTACTGAGGAAGATTTCTTCCCCAGACCA
ATTGAGGATAATTTCTTGACTTACTCTATCGATAATGTTTTCCATGTTTA
CGTCAAATGATTGTAAAATAACTTTCTGAAACGGACAAAGGACGTATAAC
TTTTCATCTGTCGATAGATAGACTCGAATCTTTGTGAAATAATGAACTTT
AAACGCTCCGCACTCAATTTGGATGTCGAGATCTGTTTTAACATCCCAAT
CAATGATTAGTTTTGTGGTGGAACTCTCTCGATCAATTTCGTAAGCGTTG
acgttgaaatctgaataacaGGTGAAATCAAATCTTGTTTTGGCGTACTG
ATCAAATCAGCTTGCAAAACAAATACATCTTCATCATAATGAACAGTTAT
CGTTTTCATTCGAGTTAAATCGTATACAATAAGGATTCCAGTGCTTTCAT
CGCTGTCAAGTTTCACCAAATAGAGATCTTCTGAACTGTTGAATGTAGTA
TAATACATTTTACCGAAAGCATCACTTTTGAAAGTTCGGAAAGGCTCACA
ATTTCCAGATGGATCGAATTTGAAAATGATGCATTGGAAAACAAAAGGGT
CGTCTTTACTGTAGATCAAAGCCATGAGGTTATTGCTGGGAGAGAATGCA
CAATAATACACAAGCATGTATGGACCTCCAAGTGTCGTCAAATTCTTATA
AACCAACTCGTCTTTTTCAATGTGGTATATTTTCATTGTGGTCTTTCGAG
GATCGCTAGGGGTCATTTCGTAAGTACGTTGATATGTTGGGTACtgttcc
atcatttgttcggAATATTTAGTTAATCTTTCTTGGACAAAACCAACTGC
TATCGATTGATCGTTAGATAAAGCAAACGGTTTAGATGGTTCACCTGATA
ATAGCAACAGCCCCGACTTACTAAACGACTCACAATCAAGCGAAGTTGCA
CAAAAACCAAAAGGTTTTTCAGTTATGTAAAGAACAATCTCTCCTTGAGA
GCAGCCAAATTTTCTGCTGAGACCAGGGTAAAACCTTTTGATTGGTTTAT
TAGAAtgaatattgatttgattccaaGGAATAATGTATTTCTTGGAACAG
TTCTTCGCCTCTTCTTGTGTAAACGTTGTTGCCAACATTTTGGAATTAAT
ATTTCTAACACTCTATAAAAGCATATGGTCAATAAGTTagtcaaaaatat
tattattcaaaattAGATCTTTGGATTTCAGGGAGAACAAAAAGACATAC
GAgtcaaaagaaaacagaaaagcgAGTGGTATACTTTCGAGAACCTTTAA
AAAGAGTTAAGAGTTAATTAACTGGTATGACTAGTGGTCAATGCAGGGCT
ACAAAACAGCTGAAATAAGGCTGGTTACGTCAAAAAGGTCTAAACTTTCC
TTAAAATGGTCTTGGAAATGTCAATATTTGCCAAAAAAAGAAGTTTCGCT
GCCAAAAATACAATGCAATAAGCTACTAACTTATAGTCAAAGTATTTAGT
TGAAATAAATCATCATAGTTGGAATAAAATACTTTCCGTTATTTTTCGTA
GATTGGAAGTGTTTAATCGTCAAAATGTTTGATCAAAATACAAACTAAAT
ATCACAAGTCATATGAAAGCTTGACGGCAAGAAATGTTCTCCAAAAACAC
ATTTACAAGACGCCAAGCATTTCTTTCAATGAACGAGGTAGATTAAAATT
CTCCAACTGACTTTTATTAAAGTTAGAAAGAACAGACCTCTTTGCAAGTT
GCAACAAAGAATTCTTCGGTGAGTCATCTTCATTATAGTGAAACATGGTG
AGCTTGTATCGATGTTTAAAAGCACCGTGCATTAACTGACAAAATACAAA
TATTTCTTCACCAGAACAATTAATGGCTATTTTTCGATGCTCAATGAAAA
GGCTTCTCTTCTGGCAATAAAGGAAACTTCTTGATAATTTTGTCTTCAAA
TGGACATAAAATGTAAAGCTTTTCATTGGACGATAGAAAGATACGTATTG
TTGTATTAAAATAAACTTTCATTTCAACATCGAATGGTTCATCGATAAAA
TTGCCAGTGATTAGTTTCATACTGCTGACTTTAGAATGTGCACCAGTGAC
CAAATCAAGCTTGTAACCAGTTATCCTGGTATCGCGCAAGTCCAACACGA
AAACAAAAGGACCTTGATTGGTACTTACCAAGAAAGATTCTACAAGAAAC
CCTTGACTTTCGTAGGAAATATAATTTAGCTTCTTTTTGTCGATGTCATA
AACAGAAATGCTCTCTGTATCAACATGACGTGGTATTCGGTTAATGTTCA
CCATTAACAGATTCTCATGTTCATTGAATGATGAACTACATACATACTTA
ACCCTCTCATACCCAAGGCTCTGTATACGAAAGGTTCGATGTTGTTTAAA
GCCACCTGATTTTGTGAATTGAAAGATCTTACAGATGATGTGCTTAGAAG
ATTTTGTTGTTCGGTAGAGTACAGAAAGCAACTTATTATTGGGCGAGATT
GTTGCAGAAAAGAAACAATCAATGGTCTCAATCCCCAAAGATAAGGATGT
TTCAGTTAATGAACGTTTTTCGAAATCGAAAATATTCATATTCATCAAAC
TTCCACTTTGTGGAGATTTTCTGGATTTCTTCCTTGGCAACGGTTTAGAA
AAACCAATAGCTAAGTTCATATCACCAGAAAACGCTGTAAAATCAAAATT
CTCAACATTCCAACCATCAAAATGAAAAGCtttgaaagaattttcattAN
ACGCTGTAAAATCAAAATTCTCAACATTCCAACCATCAAAATGAAGAGCt
ttgaaagaattttcattcaatttaGTGGAGTAAAACGTTTTCAGCCTTTC
ATCGTAAAGGATAAGCCTACCATTCTGACATCGAAATATTGTTGGATGAA
AAGGGTCAGGGACTGGTAGGTTGTAAGTGTTGACATGGTGCTCGTTTGGA
GTAGCTTTTACTTCATTCGATGGTATAATATAATGCCTTGGTCTCAAAGA
ACCTTCTGTTCCTATTGATATTTTATCTCCCATTTTGATTggttattctt
tcttttttcctcTAAAAATAATGAAACCAAAAGTCAGATTTAAAGATGAT
AATTGTAAATAGTCGAatgtgcgcaacgcactgggctcaacttcagtggc
ttcaaattattcataggcccaattgtagacccccagatattcacccaacg
aacaagtgtgccaaatttcaaccaaatccgaccattctGGAGGCATGTAG
gctgctccaaagctttagcctcgttttggcaaaaaactcgtccccaggcc
ccaaaaatcaaaattgaaaaatgcaaaaagcacccccagatattcaccca
aggaacaaatgtgcaaaatttcagccaaatcgaacaattttttattaagt
ctccaggctgccccaaagttttaacctcgttttggcgaaaaactcgtccc
cagaccccaaaaatcaaaattttcaaaaattaaaaagaacacCTCCAGAT
ATTCACTCAAGGAAcaaatgtgccaaatttcagccaaatccgaccatttt
tgaagtctccaggctgccccaaagctttagcctcgttttggcaaaaaact
cgccCCCagtccccaaaaatcaaaattttcaaaaaatgaagaaaacaccc
ccagatattcacccaaggaacaagtgtgccaaatttcagccaaatcaaac
aatttttgaagtctccaggctgccccaaagttttgggacatacacagaca
gacagacagacagacagacacacacacattctcagatccTAACTCGACTG
AAGTTGAGAGCATCAATTTGGATtcggataaatatttttgttcaaacaaa
TGGACATTTTGAGGTGACAAGACAAGAGCACTGAATCATTTCTATCGTTG
GCGCCGCCTATTCTTTCTTTGTCTCATAGTAAGGGATGCTTTATATGCTC
CTAACCTATGGTATCGTAAACTGTAATGTCTTCGGTGTGAAATTCGTAAA
ACACAGTAGCATATTCAACAAAACCTCTTTCAGCCTTTTTTTGTCTACAA
CATGGTAATTCTCTGAAACCGTGAGATGAAAGAAAGGTATAGATCATTAG
GTAATAATCTCGCAATGTACGGTGTGTCCGAAAAAAGCGGCCCAATTTTT
ATATAacgtaaaatcctcaaaactcttTATCTAAACTGGGCTTAGAATAA
TTGAAACAAGATTAAAATTCTCTGTTCATTCAGAAGatgtttttaaaaca
atacttcttcaaattttgcgaataCTTTTGATCATTTGAACTAAATAACA
GAGAAAACTtaccaatcaaatcaaaaatgaaacttcCTGAACAATAGATC
TTGATAAAAAGGTTACTCCATTTCTCTTGAACAAACTATAgccttttctt
tataaaagtaACAAACCCCATAAGTTTGTTCCGAGTTGACATTGATCCTT
GACCAAGggtgtttcttctttttataaaaatatgtatAGTATGATGTTTA
TTGTGCATTTTAGATTtgacttttatttattttttatagctaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014704-exon-sc0000197-1491911889:373845..377100 | TCONS_00014704-exon-sc0000197-1491911889:373845..377100 | Clytia hemisphaerica | exon |
| TCONS_00014704-exon-sc0000197-1510915933:373845..377100 | TCONS_00014704-exon-sc0000197-1510915933:373845..377100 | Clytia hemisphaerica | exon |
| TCONS_00014704-exon-sc0000197-1575043694:373845..377100 | TCONS_00014704-exon-sc0000197-1575043694:373845..377100 | Clytia hemisphaerica | exon |
| TCONS_00014704-exon-sc0000197-1491911889:377170..378938 | TCONS_00014704-exon-sc0000197-1491911889:377170..378938 | Clytia hemisphaerica | exon |
| TCONS_00014704-exon-sc0000197-1510915933:377170..378938 | TCONS_00014704-exon-sc0000197-1510915933:377170..378938 | Clytia hemisphaerica | exon |
| TCONS_00014704-exon-sc0000197-1575043694:377170..378938 | TCONS_00014704-exon-sc0000197-1575043694:377170..378938 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000197 | supercontig | sc0000197:373845..378938 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015943 | WD40/YVTN_repeat-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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