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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014703 ID=TCONS_00014703|Name=TCONS_00014703|organism=Clytia hemisphaerica|type=transcript|length=1970bp
ATTCAGGTGTGTCAGGGTAAACTGGGTGGTTTAGGAAATGGAGCTCCCAG
CATAGGTCCAgacaTCATGATTACAGGGTTTGAAATAGAACAATCACCTT
TAACATGGATtatattaaaatgttttaaaactatttctatccattttttt
agaaataaattaaaatggcaGGGCCAATAGTACCAGTGGCTGTTGTAAGT
GTGTTTTGGGCCATTATTGGTATTGTATGTCCTTTCTTTGTGCGTGGTGA
AAATAAGCAAGTGATTCAAGTCTGTTTGATTTTGACAGCAGTTTGTTGTT
GGTTGTTTTGGATTTGCACGTACCTTCACCAACTGAACCCCCTGATTGGT
CCAGAAATGAAGGGAGAGGAATTTCTTGCAATCTTGAAGTATTGGGGTCC
AAAACAATGAGAacatttcaatcaattttacaCACATGACTATAAATTTC
AATGAACTATTAATAAAAAACAACCTTATGAAATTATCCTCTGTTATCAC
CACTAttataaattattatttttttaccttaaagtactttttaaaaattt
aacatAAAATTTGTAGAACTTTATGCATTATGACCCTTTTGATTTGAAGG
AGAATATTTCGAGTATCATGTCGGAAATTTATAACTATCATTTCTTTGCT
CTTTTGTTGAACAACATTCGATATGCGTTGTCTtgaaattttgcctaaaa
attcACACACACATTCCTACACGCAATATGATTTTTCTAATGTCATTTAT
TTTTAGAATAGTTGGTATTTTAAAAgctaaattgttcttatctttgatgt
aaattatgaaattcaaaaagttttcgatCCAAACCAAGTTCTAAACAATG
TTTTCATAATCATCGTCTTCCTCactggtttttttttttggttttacacC
AGCTTTCAATAAAATCACGAGTATTTCTATAACATAcattatgattttta
taaattgCTTCTCATTTTTATTCCTTTTACAGATATCTTTGGAAatgcaa
aacataaaaaaagatgGAGAAATATATTTTAGCTTCAAGACCTTGGTCTT
TGTCTGCTAGTTTGATTCCAGCTCTTCTGGGAAATATTCTTGCTTACAAG
GAAGTGTCTAAAGATTTTCATATTTGGGTTGCTATTTTGACAACATTATG
CATCATCTGTGTCCATATTGCTGGAAATTTTATTAACACTTATTATGATT
TCATCAATGGTGTAGATGGTCCTAAATCAGCTGATTTAACACTAGTAACC
AATATTCTGCTTCCTTCAGTTGTATGGAATCTCAGTATATCCTGCTACTT
ATTATCCTTGCTGTTTTTCTTCGTTCTGTTGTGTATCTGTAATGTTACAT
TTGATATTGtacttttgtttacatttggagTTGGCCTGTCATTCCTGTAT
ACTGGAGGATTGCAATTGAAGTATGCAGCGATGGGAGATTTGGTCATCAT
CTTAACATTTGGACCAATCGCGGTTTTATTTGCATTTGTTTCACAAACTT
ATATTTTCTCTTTGCAACCCCTCGTTCTATCATTGCCAATTATCTGTCTA
ACAGAGGCTATTCTTCATGCGAATAATTACCGGGATTACGATGAAGACCA
AcagaaacaaatcaaaacattggcTATGATACTTGGAAAACccttttcaa
caattttctaCCTTGCACTAACTACAATGTCATTTGTCTGGACTTTCAGG
ATGGGTTGTTTTGTCAATAAAGCTTTCTTTCTACCATTAGTTTTGATACC
GAACATGTTGTCATTacaaagaaaatgtatgaaCGGAGATTTAGAGATGC
TTGACCAACTCACTGCTCAAATGCATTTACTTTATGGTGCATTGTATTTG
TATGCCGTTATTTAtagtttttgaatttaaaactcCTTCCCCAGTACGTA
TGACGAGTTTTTTGCTTTCTCTGAGAGGTGCAGATTTGTATTAAGATATG
TTTTCAGATTATGATatcca Run BLAST on NCBI protein sequence of TCONS_00014703-protein >TCONS_00014703-protein ID=TCONS_00014703-protein|Name=TCONS_00014703-protein|organism=Clytia hemisphaerica|type=polypeptide|length=286bp
MEKYILASRPWSLSASLIPALLGNILAYKEVSKDFHIWVAILTTLCIICV
HIAGNFINTYYDFINGVDGPKSADLTLVTNILLPSVVWNLSISCYLLSLL
FFFVLLCICNVTFDIVLLFTFGVGLSFLYTGGLQLKYAAMGDLVIILTFG
PIAVLFAFVSQTYIFSLQPLVLSLPIICLTEAILHANNYRDYDEDQQKQI
KTLAMILGKPFSTIFYLALTTMSFVWTFRMGCFVNKAFFLPLVLIPNMLS
LQRKCMNGDLEMLDQLTAQMHLLYGALYLYAVIYSF Run BLAST on NCBI transcript from alignment at sc0000197:355719..357791+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014703 ID=TCONS_00014703|Name=TCONS_00014703|organism=Clytia hemisphaerica|type=transcript|length=2073bp|location=Sequence derived from alignment at sc0000197:355719..357791+ (Clytia hemisphaerica)
ATTCAGGTGTGTCAGGGTAAACTGGGTGGTTTAGGAAATGGAGCTCCCAG
CATAGGTCCAgacattcttaatatttttcattttattaatcatatttttt
gttacattggcGAGAATAACTTTGTATAAAGTTTTTGCTaatcaaataat
agaaatagaaatagacaTCATGATTACAGGGTTTGAAATAGAACAATCAC
CTTTAACATGGATtatattaaaatgttttaaaactatttctatccatttt
tttagaaataaattaaaatggcaGGGCCAATAGTACCAGTGGCTGTTGTA
AGTGTGTTTTGGGCCATTATTGGTATTGTATGTCCTTTCTTTGTGCGTGG
TGAAAATAAGCAAGTGATTCAAGTCTGTTTGATTTTGACAGCAGTTTGTT
GTTGGTTGTTTTGGATTTGCACGTACCTTCACCAACTGAACCCCCTGATT
GGTCCAGAAATGAAGGGAGAGGAATTTCTTGCAATCTTGAAGTATTGGGG
TCCAAAACAATGAGAacatttcaatcaattttacaCACATGACTATAAAT
TTCAATGAACTATTAATAAAAAACAACCTTATGAAATTATCCTCTGTTAT
CACCACTAttataaattattatttttttaccttaaagtactttttaaaaa
tttaacatAAAATTTGTAGAACTTTATGCATTATGACCCTTTTGATTTGA
AGGAGAATATTTCGAGTATCATGTCGGAAATTTATAACTATCATTTCTTT
GCTCTTTTGTTGAACAACATTCGATATGCGTTGTCTtgaaattttgccta
aaaattcACACACACATTCCTACACGCAATATGATTTTTCTAATGTCATT
TATTTTTAGAATAGTTGGTATTTTAAAAgctaaattgttcttatctttga
tgtaaattatgaaattcaaaaagttttcgatCCAAACCAAGTTCTAAACA
ATGTTTTCATAATCATCGTCTTCCTCactggtttttttttttggttttac
acCAGCTTTCAATAAAATCACGAGTATTTCTATAACATAcattatgattt
ttataaattgCTTCTCATTTTTATTCCTTTTACAGATATCTTTGGAAatg
caaaacataaaaaaagatgGAGAAATATATTTTAGCTTCAAGACCTTGGT
CTTTGTCTGCTAGTTTGATTCCAGCTCTTCTGGGAAATATTCTTGCTTAC
AAGGAAGTGTCTAAAGATTTTCATATTTGGGTTGCTATTTTGACAACATT
ATGCATCATCTGTGTCCATATTGCTGGAAATTTTATTAACACTTATTATG
ATTTCATCAATGGTGTAGATGGTCCTAAATCAGCTGATTTAACACTAGTA
ACCAATATTCTGCTTCCTTCAGTTGTATGGAATCTCAGTATATCCTGCTA
CTTATTATCCTTGCTGTTTTTCTTCGTTCTGTTGTGTATCTGTAATGTTA
CATTTGATATTGtacttttgtttacatttggagTTGGCCTGTCATTCCTG
TATACTGGAGGATTGCAATTGAAGTATGCAGCGATGGGAGATTTGGTCAT
CATCTTAACATTTGGACCAATCGCGGTTTTATTTGCATTTGTTTCACAAA
CTTATATTTTCTCTTTGCAACCCCTCGTTCTATCATTGCCAATTATCTGT
CTAACAGAGGCTATTCTTCATGCGAATAATTACCGGGATTACGATGAAGA
CCAAcagaaacaaatcaaaacattggcTATGATACTTGGAAAACcctttt
caacaattttctaCCTTGCACTAACTACAATGTCATTTGTCTGGACTTTC
AGGATGGGTTGTTTTGTCAATAAAGCTTTCTTTCTACCATTAGTTTTGAT
ACCGAACATGTTGTCATTacaaagaaaatgtatgaaCGGAGATTTAGAGA
TGCTTGACCAACTCACTGCTCAAATGCATTTACTTTATGGTGCATTGTAT
TTGTATGCCGTTATTTAtagtttttgaatttaaaactcCTTCCCCAGTAC
GTATGACGAGTTTTTTGCTTTCTCTGAGAGGTGCAGATTTGTATTAAGAT
ATGTTTTCAGATTATGATatcca Coding sequence (CDS) from alignment at sc0000197:355719..357791+ >TCONS_00014703 ID=TCONS_00014703|Name=TCONS_00014703|organism=Clytia hemisphaerica|type=CDS|length=861bp|location=Sequence derived from alignment at sc0000197:355719..357791+ (Clytia hemisphaerica)
atgGAGAAATATATTTTAGCTTCAAGACCTTGGTCTTTGTCTGCTAGTTT
GATTCCAGCTCTTCTGGGAAATATTCTTGCTTACAAGGAAGTGTCTAAAG
ATTTTCATATTTGGGTTGCTATTTTGACAACATTATGCATCATCTGTGTC
CATATTGCTGGAAATTTTATTAACACTTATTATGATTTCATCAATGGTGT
AGATGGTCCTAAATCAGCTGATTTAACACTAGTAACCAATATTCTGCTTC
CTTCAGTTGTATGGAATCTCAGTATATCCTGCTACTTATTATCCTTGCTG
TTTTTCTTCGTTCTGTTGTGTATCTGTAATGTTACATTTGATATTGtact
tttgtttacatttggagTTGGCCTGTCATTCCTGTATACTGGAGGATTGC
AATTGAAGTATGCAGCGATGGGAGATTTGGTCATCATCTTAACATTTGGA
CCAATCGCGGTTTTATTTGCATTTGTTTCACAAACTTATATTTTCTCTTT
GCAACCCCTCGTTCTATCATTGCCAATTATCTGTCTAACAGAGGCTATTC
TTCATGCGAATAATTACCGGGATTACGATGAAGACCAAcagaaacaaatc
aaaacattggcTATGATACTTGGAAAACccttttcaacaattttctaCCT
TGCACTAACTACAATGTCATTTGTCTGGACTTTCAGGATGGGTTGTTTTG
TCAATAAAGCTTTCTTTCTACCATTAGTTTTGATACCGAACATGTTGTCA
TTacaaagaaaatgtatgaaCGGAGATTTAGAGATGCTTGACCAACTCAC
TGCTCAAATGCATTTACTTTATGGTGCATTGTATTTGTATGCCGTTATTT
Atagtttttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014703-exon-sc0000197-1491911889:355719..355781 | TCONS_00014703-exon-sc0000197-1491911889:355719..355781 | Clytia hemisphaerica | exon |
| TCONS_00014703-exon-sc0000197-1510915933:355719..355781 | TCONS_00014703-exon-sc0000197-1510915933:355719..355781 | Clytia hemisphaerica | exon |
| TCONS_00014703-exon-sc0000197-1575043694:355719..355781 | TCONS_00014703-exon-sc0000197-1575043694:355719..355781 | Clytia hemisphaerica | exon |
| TCONS_00014703-exon-sc0000197-1491911889:355885..357791 | TCONS_00014703-exon-sc0000197-1491911889:355885..357791 | Clytia hemisphaerica | exon |
| TCONS_00014703-exon-sc0000197-1510915933:355885..357791 | TCONS_00014703-exon-sc0000197-1510915933:355885..357791 | Clytia hemisphaerica | exon |
| TCONS_00014703-exon-sc0000197-1575043694:355885..357791 | TCONS_00014703-exon-sc0000197-1575043694:355885..357791 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000197 | supercontig | sc0000197:355719..357791 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups |
| GO:0004659 | prenyltransferase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004659 |
prenyltransferase activity |
| molecular_function |
GO:0016765 |
transferase activity, transferring alkyl or aryl (other than methyl) groups |
Blast
BLAST of TCONS_00014703 vs. Swiss-Prot (Human)
Match: UBIA1 (UbiA prenyltransferase domain-containing protein 1 OS=Homo sapiens GN=UBIAD1 PE=1 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 1.823e-52 Identity = 113/287 (39.37%), Postives = 167/287 (58.19%), Query Frame = 3
Query: 1008 KKMEKYILASRPWSLSASLIPALLGNILAYKEVSK-DFHIWVAILTTLCIICVHIAGNFINTYYDFINGVDGPKSADLTLVTNILLPSVVWNXXXXXXXXXXXXXXXXXXXXNVTFD-IVLLFTFGVGLSFLYTGGLQLKYAAMGDLVIILTFGPIAVLFAFVSQTYIFSLQPLVLSLPIICLTEAILHANNYRDYDEDQQKQIKTLAMILGKPFSTIFYLALTTMSFVWTFRMGCFVNKAFFLPLVLIPNMLSLQRKCMNGDLEMLDQLTAQMHLLYGALYLYAVI 1862
+K Y+LA RPWS SASL P LG+ LAY+ D + V + ++ VH AGN +NTYYDF G+D KS D TLV IL P V + Y L + L + + + + L++ G+ SFLYTGG+ KY A+GDL+I++TFGP+AV+FA+ Q ++ PLV ++P+ TEAILH+NN RD + D++ I TLA+++G FS I Y L + ++ + + LPL+ IP SL+R+ + L Q TA+++LL G Y++ +I
Sbjct: 44 QKCASYVLALRPWSFSASLTPVALGSALAYRSHGVLDPRLLVG--CAVAVLAVHGAGNLVNTYYDFSKGIDHKKSDDRTLVDRILEPQDVVRFGVFLYTLGCVCAACLYYLSPLKLEHLALIYFGGLSGSFLYTGGIGFKYVALGDLIILITFGPLAVMFAYAIQVGSLAIFPLVYAIPLALSTEAILHSNNTRDMESDREAGIVTLAILIGPTFSYILYNTLLFLPYLVFSILATHCTISLALPLLTIPMAFSLERQFRSQAFNKLPQRTAKLNLLLGLFYVFGII 328
The following BLAST results are available for this feature:
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