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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014701 ID=TCONS_00014701|Name=TCONS_00014701|organism=Clytia hemisphaerica|type=transcript|length=2256bp
CTCTTTTCATAATGAAGTGGTTTGTGCCAAGGATAGTAAAACATTTGACC
ACAAGTGAAATTAGTGGACTTTTCGTCCTACTGGAAGCCTGGTAGCAGGT
GGTAATAATGGATGAGAAAATTAGCAAAGCAAGGCGCAAGATCAGTCAGC
CTTTCCGCAGGCTACAGCCCGTTCAAGAAACGAGTCACGCGAACATTCAC
GAAAACACGACTCTTGCTCACGAAATGGAAACAAACACCACAAGATCACG
ACCTCGTTCGAAAACATTGGCTGATATCTCACAGGATTCATTTGAGATTA
GACGTCGTTCAGAAGATTCACACAAAGCTAGCATTTTCAGTCACCTTGGT
CACACTATATTTGTTCACCATCATAAATCGGATAAAGAGAGAGTCCATGG
ATACAAGTCTTTCAAAATTCTCGTTCTCGGTGTTAAAGAAGTCGGTAAAA
CGTCAATCATAAAACGTTTCATCAATGGTAAATTCAACGACGAATATCTG
CCGACAATTTCCGAAGAATATGAAACAGGtatatttctcgagattgaaaa
taaattaaaacagTTTGATCTTGTTTTCAAAGACTTTGGAGGTgacttaa
aaacattttatccAGAACTTTACAAAGATGAAGTCAAAAGTGCAGATGGA
TTTATATTAGTACACACGGAAAACATCCCAGAAAGCTTTGCAGAAGTATT
AGAAATGGTAGCTGATATCCAGCATGCAAGGCGTCAAGAAGTCTCAATTA
TGATTCTAGAAAATCAAAGTGAGCGACAGAAtcagtttgatgtttttaaa
gtTACCAGGAAATCGTTCATTATGGAGGGAATGTTGAATGATTCAGTATC
AGCCAAAATGAATTATAGAGTTGATGAATCAATCGCTGAACTCGTCAAAG
AAATGGAGAAGAAGCTCACGTGAGCTTTatattatctttccaacgatctA
AACATCTCAAACGAGGTTGTGTTATTGATATGTTCAGAGAGGAAACTGGt
ttgagaaatatttgaaatagaaatctttttattccaaaaaaaaagaaaaa
ggttcaGAAAATGATACCATGTCTTGACTAGCATGTATTCTAAAGGGAtg
tattttaaaacttttcccCTGCAATCATTACGATTATCTCAAAAGGAAAC
AGCGGAATGAAATAGGATGTACTTGTGAAAAATGACAGTTTAAATATACT
TTTATcaacaaacacaaaaaaatattcaagaaattTGATACTTTCAAGTT
TCGAAATTCCATTTTGACCGCAATAGAGCTACTTCGCTACTAAGTGGCAC
GTATAAGCTTTTTTGATATCAGATTTCCTAattaaattttaagatattat
gAGACAAATTCTAAAGTTACCTTAGCGGCCCTTtctacaccggcccttat
tggagTTATTTTTCGTCGCTGGTGAAATGAGTACGCCGGCGTAAGGGCTC
AGAATTAAGGCGGGCTAGAGATGGAAAAATTGATCTTGTGCTATAAGAAC
TGGCGCTTAATTAaggaccggcgtaaaaagggccgacaAGGTAAATACAA
GAAAGATATTCTTAAAGAAAATTCATACCTTTATACCAGAGCTATAGGAA
CGGTGAAAATGTCTCTCATTCATTGCCAGTCACGTTATCAACACATTCAA
GTACATTCTTTCGACAGCCAAACTTAGCTAAACTttctttttaatatatt
tttttcattttctatatTTTGACTCTAAATGAAAAGACGAGAAGAGATTC
AATTAAAGTTTTCTATTATTATAAAGTGCCCTTAACGATACTAGCCTTTT
TTCCACCATACTTTATCCTAAGGATAGGGTAGGAATCATTTTACAGATCC
ATCCACCAATGGTCCACCCAAAGTTTTCCACTAACCGTCATTTAATCATA
ATTATTATAGCACCACTGGCCCATCGTGTACCCAAACTTCTCCACTGGCC
CATTGTCGTGGCAATTTCCTCTCAGGAAAAAATTTACCCATGAAAAATGG
TCTAAAGTAGATGAGTCTGTCGATTTAGTGTATTTTCTTTTCACACTAGT
TTaggtttgcaaaaaaaatttatacatatctttttattatatatattatg
tacagttgaaattttatcaaatattatcAGTATATTGAATAATAGAATCA
ACATCCTCTGTCAAAAAGGTAGCATGTTTCAAAATTGCTCATCTTTATTG
TGTCTTTTTTAAAGTAAACAGgtttatttgtctttttctatcaatgtaca
cgtttt Run BLAST on NCBI transcript from alignment at sc0000197:313147..315608+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014701 ID=TCONS_00014701|Name=TCONS_00014701|organism=Clytia hemisphaerica|type=transcript|length=2462bp|location=Sequence derived from alignment at sc0000197:313147..315608+ (Clytia hemisphaerica)
CTCTTTTCATAATGAAGTGGTTTGTGCCAAGGATAGTAAAACATTTGACC
ACAAGTGAAATTAGTGGACTTTTCGTCCTACTGGAAGCCTGGTAGCAGGT
GGTAATAATGGATGAGAAAATTAGCAAAGCAAGGGTATACCAACTTTCaa
caatttaatttcaattttaaagggAAAATGTAGCAAAGTGCCATgaaagt
gacaaaaaatcagtctaaaataataattaaaaattaaagctttttctaaa
gcaaattatttttaaagggTCTAAAATAGCGAAGGAAAAGGTCCTGAGGA
GGCGTTTGTTAAGCGTAAtttgttttccatttttctttagCGCAAGATCA
GTCAGCCTTTCCGCAGGCTACAGCCCGTTCAAGAAACGAGTCACGCGAAC
ATTCACGAAAACACGACTCTTGCTCACGAAATGGAAACAAACACCACAAG
ATCACGACCTCGTTCGAAAACATTGGCTGATATCTCACAGGATTCATTTG
AGATTAGACGTCGTTCAGAAGATTCACACAAAGCTAGCATTTTCAGTCAC
CTTGGTCACACTATATTTGTTCACCATCATAAATCGGATAAAGAGAGAGT
CCATGGATACAAGTCTTTCAAAATTCTCGTTCTCGGTGTTAAAGAAGTCG
GTAAAACGTCAATCATAAAACGTTTCATCAATGGTAAATTCAACGACGAA
TATCTGCCGACAATTTCCGAAGAATATGAAACAGGtatatttctcgagat
tgaaaataaattaaaacagTTTGATCTTGTTTTCAAAGACTTTGGAGGTg
acttaaaaacattttatccAGAACTTTACAAAGATGAAGTCAAAAGTGCA
GATGGATTTATATTAGTACACACGGAAAACATCCCAGAAAGCTTTGCAGA
AGTATTAGAAATGGTAGCTGATATCCAGCATGCAAGGCGTCAAGAAGTCT
CAATTATGATTCTAGAAAATCAAAGTGAGCGACAGAAtcagtttgatgtt
tttaaagtTACCAGGAAATCGTTCATTATGGAGGGAATGTTGAATGATTC
AGTATCAGCCAAAATGAATTATAGAGTTGATGAATCAATCGCTGAACTCG
TCAAAGAAATGGAGAAGAAGCTCACGTGAGCTTTatattatctttccaac
gatctAAACATCTCAAACGAGGTTGTGTTATTGATATGTTCAGAGAGGAA
ACTGGtttgagaaatatttgaaatagaaatctttttattccaaaaaaaaa
gaaaaaggttcaGAAAATGATACCATGTCTTGACTAGCATGTATTCTAAA
GGGAtgtattttaaaacttttcccCTGCAATCATTACGATTATCTCAAAA
GGAAACAGCGGAATGAAATAGGATGTACTTGTGAAAAATGACAGTTTAAA
TATACTTTTATcaacaaacacaaaaaaatattcaagaaattTGATACTTT
CAAGTTTCGAAATTCCATTTTGACCGCAATAGAGCTACTTCGCTACTAAG
TGGCACGTATAAGCTTTTTTGATATCAGATTTCCTAattaaattttaaga
tattatgAGACAAATTCTAAAGTTACCTTAGCGGCCCTTtctacaccggc
ccttattggagTTATTTTTCGTCGCTGGTGAAATGAGTACGCCGGCGTAA
GGGCTCAGAATTAAGGCGGGCTAGAGATGGAAAAATTGATCTTGTGCTAT
AAGAACTGGCGCTTAATTAaggaccggcgtaaaaagggccgacaAGGTAA
ATACAAGAAAGATATTCTTAAAGAAAATTCATACCTTTATACCAGAGCTA
TAGGAACGGTGAAAATGTCTCTCATTCATTGCCAGTCACGTTATCAACAC
ATTCAAGTACATTCTTTCGACAGCCAAACTTAGCTAAACTttctttttaa
tatatttttttcattttctatatTTTGACTCTAAATGAAAAGACGAGAAG
AGATTCAATTAAAGTTTTCTATTATTATAAAGTGCCCTTAACGATACTAG
CCTTTTTTCCACCATACTTTATCCTAAGGATAGGGTAGGAATCATTTTAC
AGATCCATCCACCAATGGTCCACCCAAAGTTTTCCACTAACCGTCATTTA
ATCATAATTATTATAGCACCACTGGCCCATCGTGTACCCAAACTTCTCCA
CTGGCCCATTGTCGTGGCAATTTCCTCTCAGGAAAAAATTTACCCATGAA
AAATGGTCTAAAGTAGATGAGTCTGTCGATTTAGTGTATTTTCTTTTCAC
ACTAGTTTaggtttgcaaaaaaaatttatacatatctttttattatatat
attatgtacagttgaaattttatcaaatattatcAGTATATTGAATAATA
GAATCAACATCCTCTGTCAAAAAGGTAGCATGTTTCAAAATTGCTCATCT
TTATTGTGTCTTTTTTAAAGTAAACAGgtttatttgtctttttctatcaa
tgtacacgtttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014701-exon-sc0000197-1491911889:313147..313280 | TCONS_00014701-exon-sc0000197-1491911889:313147..313280 | Clytia hemisphaerica | exon |
| TCONS_00014701-exon-sc0000197-1510915933:313147..313280 | TCONS_00014701-exon-sc0000197-1510915933:313147..313280 | Clytia hemisphaerica | exon |
| TCONS_00014701-exon-sc0000197-1575043694:313147..313280 | TCONS_00014701-exon-sc0000197-1575043694:313147..313280 | Clytia hemisphaerica | exon |
| TCONS_00014701-exon-sc0000197-1491911889:313487..315608 | TCONS_00014701-exon-sc0000197-1491911889:313487..315608 | Clytia hemisphaerica | exon |
| TCONS_00014701-exon-sc0000197-1510915933:313487..315608 | TCONS_00014701-exon-sc0000197-1510915933:313487..315608 | Clytia hemisphaerica | exon |
| TCONS_00014701-exon-sc0000197-1575043694:313487..315608 | TCONS_00014701-exon-sc0000197-1575043694:313487..315608 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000197 | supercontig | sc0000197:313147..315608 + |
Blast
The following BLAST results are available for this feature:
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