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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014699 ID=TCONS_00014699|Name=TCONS_00014699|organism=Clytia hemisphaerica|type=transcript|length=2167bp
GTTTTTCATTTAAAGATTTAATATTCAAATAGCAATCAATTTCAGCGCAA
GATCAGTCAGCCTTTCCGCAGGCTACAGCCCGTTCAAGAAACGAGTCACG
CGAACATTCACGAAAACACGACTCTTGCTCACGAAATGGAAACAAACACC
ACAAGATCACGACCTCGTTCGAAAACATTGGCTGATATCTCACAGGATTC
ATTTGAGATTAGACGTCGTTCAGAAGATTCACACAAAGCTAGCATTTTCA
GTCACCTTGGTCACACTATATTTGTTCACCATCATAAATCGGATAAAGAG
AGAGTCCATGGATACAAGTCTTTCAAAATTCTCGTTCTCGGTGTTAAAGA
AGTCGGTAAAACGTCAATCATAAAACGTTTCATCAATGGTAAATTCAACG
ACGAATATCTGCCGACAATTTCCGAAGAATATGAAACAGGtatatttctc
gagattgaaaataaattaaaacagTTTGATCTTGTTTTCAAAGACTTTGG
AGGTgacttaaaaacattttatccAGAACTTTACAAAGATGAAGTCAAAA
GTGCAGATGGATTTATATTAGTACACACGGAAAACATCCCAGAAAGCTTT
GCAGAAGTATTAGAAATGGTAGCTGATATCCAGCATGCAAGGCGTCAAGA
AGTCTCAATTATGATTCTAGAAAATCAAAGTGAGCGACAGAAtcagtttg
atgtttttaaagtTACCAGGAAATCGTTCATTATGGAGGGAATGTTGAAT
GATTCAGTATCAGCCAAAATGAATTATAGAGTTGATGAATCAATCGCTGA
ACTCGTCAAAGAAATGGAGAAGAAGCTCACGTGAGCTTTatattatcttt
ccaacgatctAAACATCTCAAACGAGGTTGTGTTATTGATATGTTCAGAG
AGGAAACTGGtttgagaaatatttgaaatagaaatctttttattccaaaa
aaaaagaaaaaggttcaGAAAATGATACCATGTCTTGACTAGCATGTATT
CTAAAGGGAtgtattttaaaacttttcccCTGCAATCATTACGATTATCT
CAAAAGGAAACAGCGGAATGAAATAGGATGTACTTGTGAAAAATGACAGT
TTAAATATACTTTTATcaacaaacacaaaaaaatattcaagaaattTGAT
ACTTTCAAGTTTCGAAATTCCATTTTGACCGCAATAGAGCTACTTCGCTA
CTAAGTGGCACGTATAAGCTTTTTTGATATCAGATTTCCTAattaaattt
taagatattatgAGACAAATTCTAAAGTTACCTTAGCGGCCCTTtctaca
ccggcccttattggagTTATTTTTCGTCGCTGGTGAAATGAGTACGCCGG
CGTAAGGGCTCAGAATTAAGGCGGGCTAGAGATGGAAAAATTGATCTTGT
GCTATAAGAACTGGCGCTTAATTAaggaccggcgtaaaaagggccgacaA
GGTAAATACAAGAAAGATATTCTTAAAGAAAATTCATACCTTTATACCAG
AGCTATAGGAACGGTGAAAATGTCTCTCATTCATTGCCAGTCACGTTATC
AACACATTCAAGTACATTCTTTCGACAGCCAAACTTAGCTAAACTttctt
tttaatatatttttttcattttctatatTTTGACTCTAAATGAAAAGACG
AGAAGAGATTCAATTAAAGTTTTCTATTATTATAAAGTGCCCTTAACGAT
ACTAGCCTTTTTTCCACCATACTTTATCCTAAGGATAGGGTAGGAATCAT
TTTACAGATCCATCCACCAATGGTCCACCCAAAGTTTTCCACTAACCGTC
ATTTAATCATAATTATTATAGCACCACTGGCCCATCGTGTACCCAAACTT
CTCCACTGGCCCATTGTCGTGGCAATTTCCTCTCAGGAAAAAATTTACCC
ATGAAAAATGGTCTAAAGTAGATGAGTCTGTCGATTTAGTGTATTTTCTT
TTCACACTAGTTTaggtttgcaaaaaaaatttatacatatctttttatta
tatatattatgtacagttgaaattttatcaaatattatcAGTATATTGAA
TAATAGAATCAACATCCTCTGTCAAAAAGGTAGCATGTTTCAAAATTGCT
CATCTTTATTGTGTCTTTTTTAAAGTAAACAGgtttatttgtctttttct
atcaatgtacacgtttt Run BLAST on NCBI transcript from alignment at sc0000197:312016..315608+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014699 ID=TCONS_00014699|Name=TCONS_00014699|organism=Clytia hemisphaerica|type=transcript|length=3593bp|location=Sequence derived from alignment at sc0000197:312016..315608+ (Clytia hemisphaerica)
GTTTTTCATTTAAAGATTTAATATTCAAATAGCAATCAATTTCAGGTGGG
TAAATAGTTAAACGTCATCTTTGAATTTCATCTTCTTGATAAAATCCTTT
CACATGAGGGTTGTCACTCAGACGCTTGTTTAgacattttcttccaaatt
tttaaagaaaatcataTGCCCCATTAGATCTTTCGTGGACACTCCGAGTG
TTATAATTTGATGATATTCTGAAATAAGCAAGAAGCTTGAAATACTGACT
ATTCAAGGCCAATTCCATGATAGTATACAACTATCACCATTTAAAGCGTG
GGGAGACTGGGTTCGATTTTACCAGGAAGAATGACTGAAGTTTGGCGTTC
TCATAAAACAATGTATTTTGACGtcattactcttaggttccaaataaaca
ggggggttcAAATAAACGGGgagacctaattgccggggggttggaaattg
tacttctgaagacccaaaaataaggtaaatataggctaaaatggGGCTAT
TCagagcaaaataaggaaaattttggaaaaattaataagggggggggggg
ggcgtttatttggaacctaagagtacctcTCACAAGCGCTGTAAAGGGCT
GATAGGTGAATTTGTCTAAGTATCTCTGGGATATCTTATACAAGATGTGA
AATTTAACCTTTAAAAAACAGTTTCTCAACTTGCTGCAAGATACACCTGA
CAGTTGTGTGTTGGCTCTTCAACGACATGGTAATCCAACTACGTGGCAGA
AAATACCTTGTAAATCAAACGCCAAAGACTTtgaatttttggtattttta
ctTAAGCCTTTTGTAGACTAACTGTGGCGGACTAATCCAATGTCACTTTA
TAATTTATATTTACACTTCCCCAAAAAAAGGCTTTTTCCCAATTGGATTG
GCTTAAGGGTAGGCTAAAAACTTATTGTAAAACGATACGCAAAACGAAAC
ATAGAGAAGAAACTAAAACTAATGAAAAACTTCGAAGGTATGAGAAACAA
ATAGCCGGGCGAAGATTTTTGAAGAAGtgaaaatttgcaatatttttcca
TTTCCACTTTATTTGAACAAGTTTTCAAACAAACCAGAAAGAAATACAAC
CAAATGTTATAAATAGATGATGAAGAGATATCTCTTTTCATAATGAAGTG
GTTTGTGCCAAGGATAGTAAAACATTTGACCACAAGTGAAATTAGTGGAC
TTTTCGTCCTACTGGAAGCCTGGTAGCAGGTGGTAATAATGGATGAGAAA
ATTAGCAAAGCAAGGGTATACCAACTTTCaacaatttaatttcaatttta
aagggAAAATGTAGCAAAGTGCCATgaaagtgacaaaaaatcagtctaaa
ataataattaaaaattaaagctttttctaaagcaaattatttttaaaggg
TCTAAAATAGCGAAGGAAAAGGTCCTGAGGAGGCGTTTGTTAAGCGTAAt
ttgttttccatttttctttagCGCAAGATCAGTCAGCCTTTCCGCAGGCT
ACAGCCCGTTCAAGAAACGAGTCACGCGAACATTCACGAAAACACGACTC
TTGCTCACGAAATGGAAACAAACACCACAAGATCACGACCTCGTTCGAAA
ACATTGGCTGATATCTCACAGGATTCATTTGAGATTAGACGTCGTTCAGA
AGATTCACACAAAGCTAGCATTTTCAGTCACCTTGGTCACACTATATTTG
TTCACCATCATAAATCGGATAAAGAGAGAGTCCATGGATACAAGTCTTTC
AAAATTCTCGTTCTCGGTGTTAAAGAAGTCGGTAAAACGTCAATCATAAA
ACGTTTCATCAATGGTAAATTCAACGACGAATATCTGCCGACAATTTCCG
AAGAATATGAAACAGGtatatttctcgagattgaaaataaattaaaacag
TTTGATCTTGTTTTCAAAGACTTTGGAGGTgacttaaaaacattttatcc
AGAACTTTACAAAGATGAAGTCAAAAGTGCAGATGGATTTATATTAGTAC
ACACGGAAAACATCCCAGAAAGCTTTGCAGAAGTATTAGAAATGGTAGCT
GATATCCAGCATGCAAGGCGTCAAGAAGTCTCAATTATGATTCTAGAAAA
TCAAAGTGAGCGACAGAAtcagtttgatgtttttaaagtTACCAGGAAAT
CGTTCATTATGGAGGGAATGTTGAATGATTCAGTATCAGCCAAAATGAAT
TATAGAGTTGATGAATCAATCGCTGAACTCGTCAAAGAAATGGAGAAGAA
GCTCACGTGAGCTTTatattatctttccaacgatctAAACATCTCAAACG
AGGTTGTGTTATTGATATGTTCAGAGAGGAAACTGGtttgagaaatattt
gaaatagaaatctttttattccaaaaaaaaagaaaaaggttcaGAAAATG
ATACCATGTCTTGACTAGCATGTATTCTAAAGGGAtgtattttaaaactt
ttcccCTGCAATCATTACGATTATCTCAAAAGGAAACAGCGGAATGAAAT
AGGATGTACTTGTGAAAAATGACAGTTTAAATATACTTTTATcaacaaac
acaaaaaaatattcaagaaattTGATACTTTCAAGTTTCGAAATTCCATT
TTGACCGCAATAGAGCTACTTCGCTACTAAGTGGCACGTATAAGCTTTTT
TGATATCAGATTTCCTAattaaattttaagatattatgAGACAAATTCTA
AAGTTACCTTAGCGGCCCTTtctacaccggcccttattggagTTATTTTT
CGTCGCTGGTGAAATGAGTACGCCGGCGTAAGGGCTCAGAATTAAGGCGG
GCTAGAGATGGAAAAATTGATCTTGTGCTATAAGAACTGGCGCTTAATTA
aggaccggcgtaaaaagggccgacaAGGTAAATACAAGAAAGATATTCTT
AAAGAAAATTCATACCTTTATACCAGAGCTATAGGAACGGTGAAAATGTC
TCTCATTCATTGCCAGTCACGTTATCAACACATTCAAGTACATTCTTTCG
ACAGCCAAACTTAGCTAAACTttctttttaatatatttttttcattttct
atatTTTGACTCTAAATGAAAAGACGAGAAGAGATTCAATTAAAGTTTTC
TATTATTATAAAGTGCCCTTAACGATACTAGCCTTTTTTCCACCATACTT
TATCCTAAGGATAGGGTAGGAATCATTTTACAGATCCATCCACCAATGGT
CCACCCAAAGTTTTCCACTAACCGTCATTTAATCATAATTATTATAGCAC
CACTGGCCCATCGTGTACCCAAACTTCTCCACTGGCCCATTGTCGTGGCA
ATTTCCTCTCAGGAAAAAATTTACCCATGAAAAATGGTCTAAAGTAGATG
AGTCTGTCGATTTAGTGTATTTTCTTTTCACACTAGTTTaggtttgcaaa
aaaaatttatacatatctttttattatatatattatgtacagttgaaatt
ttatcaaatattatcAGTATATTGAATAATAGAATCAACATCCTCTGTCA
AAAAGGTAGCATGTTTCAAAATTGCTCATCTTTATTGTGTCTTTTTTAAA
GTAAACAGgtttatttgtctttttctatcaatgtacacgtttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014699-exon-sc0000197-1491911889:312016..312060 | TCONS_00014699-exon-sc0000197-1491911889:312016..312060 | Clytia hemisphaerica | exon |
| TCONS_00014699-exon-sc0000197-1510915933:312016..312060 | TCONS_00014699-exon-sc0000197-1510915933:312016..312060 | Clytia hemisphaerica | exon |
| TCONS_00014699-exon-sc0000197-1575043694:312016..312060 | TCONS_00014699-exon-sc0000197-1575043694:312016..312060 | Clytia hemisphaerica | exon |
| TCONS_00014699-exon-sc0000197-1491911889:313487..315608 | TCONS_00014699-exon-sc0000197-1491911889:313487..315608 | Clytia hemisphaerica | exon |
| TCONS_00014699-exon-sc0000197-1510915933:313487..315608 | TCONS_00014699-exon-sc0000197-1510915933:313487..315608 | Clytia hemisphaerica | exon |
| TCONS_00014699-exon-sc0000197-1575043694:313487..315608 | TCONS_00014699-exon-sc0000197-1575043694:313487..315608 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000197 | supercontig | sc0000197:312016..315608 + |
Blast
The following BLAST results are available for this feature:
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