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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014666 ID=TCONS_00014666|Name=TCONS_00014666|organism=Clytia hemisphaerica|type=transcript|length=2229bpRun BLAST on NCBI protein sequence of TCONS_00014666-protein >TCONS_00014666-protein ID=TCONS_00014666-protein|Name=TCONS_00014666-protein|organism=Clytia hemisphaerica|type=polypeptide|length=429bp MAHWFHRNPLKASKTQDFDGLKKIAKTPPAAKICGDLRVYRVKALQQLQDRun BLAST on NCBI transcript from alignment at sc0000197:5505..10564+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014666 ID=TCONS_00014666|Name=TCONS_00014666|organism=Clytia hemisphaerica|type=transcript|length=5060bp|location=Sequence derived from alignment at sc0000197:5505..10564+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000197:5505..10564+ >TCONS_00014666 ID=TCONS_00014666|Name=TCONS_00014666|organism=Clytia hemisphaerica|type=CDS|length=14190bp|location=Sequence derived from alignment at sc0000197:5505..10564+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00014666 vs. Swiss-Prot (Human)
Match: BROX (BRO1 domain-containing protein BROX OS=Homo sapiens GN=BROX PE=1 SV=1) HSP 1 Score: 325.865 bits (834), Expect = 5.496e-103 Identity = 187/430 (43.49%), Postives = 252/430 (58.60%), Query Frame = 1
Query: 214 MAHWFHRNPLKASKTQDFDGLXXXXXXXXXXXXCGDLRVYRVKALQQLQDPRNAVEQVEKTVNEYLSLFWGLLEDVKGPVKEGESAPPTSASGEAKLQKIETFKWSHSICGNTAIAVPDANYELASVLTELALWYTKRASYLSSNENLSDEEAKEVFKSLRQAAGIFMQAKNICESKLGTGLVEKHSDADPRVLDAYHLQCLAEAQEVTVARAVELKHKSTTITAVALGTSSLFSKADDSLRSIDAAKSGKWRRYLQIKKNIYLAYAHSFKGETLLAEDQCGNAIRSLQEADKCYKLAGQLCKEYASTKGPGKSARPDAHQFFRRLGPIVHQRLEKATHENGFIYHQKV-XXXXXXXXXXXIGIASPVEFALPSHNPRWKPEIFAAFDAGKAQSQMTGKDKEDNEKIEPVKEIDDPNSAGNKNETGCVIS 1500
M HWFHRNPLKA+ F+ + P A+KIC DLR R + L+ D E ++ + Y SL G + + ++ E+KL+ I+ FKW+ ++ G A DA +EL S+ +ALWYTK AS L+ EN++++EAKEV +SL+ AAGIF K KL T EK D + R+++AY +QC AEAQEVT+ARA+ELKH I A+A T++ + KAD +L S++ A S KWR+YL +K Y AYA+ + GETLLA D+CG AIRSLQEA+K Y A LCKEY TKGPG + +P H FFR+LG +V LEK ENGFIY QK+ E G+ P+ F P + +W PE AAFD K + K K + E+++PVKE D + +TGC IS
Sbjct: 1 MTHWFHRNPLKATAPVSFN-YYGVVTGPSASKICNDLRSSRARLLELFTDLSCNPEMMKNAADSYFSLLQGFINSLD------------ESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKHLKESHLPKLITP-AEKGRDLESRLIEAYVIQCQAEAQEVTIARAIELKHAPGLIAALAYETANFYQKADHTLSSLEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLASDKCGEAIRSLQEAEKLYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLVKNTLEKCQRENGFIYFQKIPTEAPQLELKANYGLVEPIPFEFPPTSVQWTPETLAAFDLTKRPKDDSTKPKPE-EEVKPVKEPD----IKPQKDTGCYIS 411 The following BLAST results are available for this feature:
BLAST of TCONS_00014666 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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