TCONS_00014643 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014643
Unique NameTCONS_00014643
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1899

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014643 ID=TCONS_00014643|Name=TCONS_00014643|organism=Clytia hemisphaerica|type=transcript|length=1899bp
AGGAGCGAGAGGAAGTTAATTTATAATCCCTTTTTAGCATGATTGCTTTG
CGCTCCCTCAAAGTGATTACATTAGTTTTTCATTGCTCAATCCAATTGTT
GATATGGTATCGATTTTCAAACATAATTTGCTTTTCGTTGACTCCATATA
GTCATTTGTATTTGACAAATAATTTGGAGATATGTCCAGGCTAGCTAGCA
CTACTTTGTATAGTGATCTGAAGtatgcaaaaaaattaagatggaGGAGG
AAAACTGGTATATTCATATTgaaagtttatcgtggcttggatcgcGAGAT
TTACgtgagattcttctcccatcatcgggcaagCTATAATGGGATATATA
AAAGAATCAGCAATGAACTGTACAGAAATTGTTTTCACGAAAACAGACAC
GTACCGCACCATACAAATCGTcgttttgacatttttcttgTCCATCGTCA
TGCTTaataacattttggccatctaTGCAACCCAAAAATCAATATCAACG
AAATATTGTATTTTTGCTCAACTTTACAATATTTCATACATCAGTAACAT
CATGGCTGCTTTTTCATTGTACGGTGGCAGTTTGTTTATAACCGATTACC
ATGGCGACGCATTCGGCTGCCGGCAATTACCACTTGATCGATATTTCTTT
TTATGTTTTGGAATGTCGAATAACGTTTTGGTTTTGTTGCTAAATACTTA
TTTAAGACGTAAATCGTTGATGGATCCTCTCGCAAGTTGTGATGTGCCAA
GAAGCAAATGGAAAGCTGTCCTAAAGTTCCTCGTCCCATTCTTCCTAGTC
TCGTTAACGCTGTCAGCGATGAATATTGTATTCCAATATGAAGTCCAAAT
GAATTTCTACATTGGAGTTGCAGTTGGGTTTTACGTACCTGTCATGATAG
TTGTTATCGTGTTAAATATACACCTTACATACTTCCTAAACGAAAGTAAA
AAGATTGCCGAAAATATTAATCAACAATCGTCGCGTAACCTAATGAAAGC
TCGTAAAATATTATTAATGATCGTTAAACTACAATCTTTTTATACCTTTT
TATGGATTATCTTGGTCATTTTGATGCATACCATTGGTGTAAAGAACGAA
ATcaattttgttattcttgaaTGGCTTATGCGTGTAGTATACGGGCTAAG
TTTTGTATTAGAGGCTAAAATTTTAATCCGCCGTGACAAAGTAGTTCAAA
AGGTACTTCTGAAAGCATTTCGTAAAATGTCGAAATTTTCGAGGGATGTT
TCGTCAACGATCAGTCGTTCAGCCACAAGAAGCAGTCAAAGCAGTAAAAG
TAAACAGAAAACTGAACCAAGCAGCATTGAAATTCATATGGATCCGGTGG
TTTTAGGATCTACTTCTTCATAAAGAACCCTAAAAACTTTGTAAACTACT
TATCAGACAATACTTTCGTCCATTAGAGGgacagtaaacgcgggaaataT
ATATGCGCAGATTTTACAGCCATCACGGCGGTATACgggagaaaaacaaa
aatagtgGTGGTAGAGGTTGGAACAAACGCTtacactgtaaacacctccg
caACTGCTTACTCCGCCCCGGGCTAAACTCCACTTTCAAATGTATCCCCA
CCTCTTAAATTATTCTATTTTGAGTGACCTTGTGTAACAACTTATATATT
GTATATACAATGTAAGATGATTGCTATGTATGTTTCTGAGTCATACACGA
TTCTCGAGAATCAAATTGTTGCGacccttattttcaaatataatatttAC
TATGTAGAGTGCAAACCCATTAATCATTATCTAACGATACATCTTGGCAA
TACTATGGGTTAGTTTAAGGAATAATTGAAAATGTGAACTAGATTTTATG
ACTCTATACTTATTACTATGATTTCTTAAGCAGTAaatgtttttatcat
Run BLAST on NCBI

transcript from alignment at sc0000191:458062..461311-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014643 ID=TCONS_00014643|Name=TCONS_00014643|organism=Clytia hemisphaerica|type=transcript|length=3250bp|location=Sequence derived from alignment at sc0000191:458062..461311- (Clytia hemisphaerica)
AGGAGCGAGAGGAAGTTAATTTATAATCCCTTTTTAGCATGATTGCTTTG
CGCTCCCTCAAAGTGATTACATTAGTTTTTCATTGCTCAATCCAATTGTT
GATATGGTATCGATTTTCAAACATAATTTGCTTTTCGTTGACTCCATATA
GTCATTTGTATTTGACAAATAATTTGGAGATATGTCCAGGCTAGCTAGCA
CTACTTTGTATAGTGATCTGAAGTATGCAAAAAAATTAAGATGGAGGAGG
AAAACTGGTATATTCATATTGAAAGTTTATCGTGGCTTGGATCGCGAGAT
TTACGTGAGATTCTTCTCCCATCATCGGGCAAGGTGGAGGATATGTTTTC
TACTCTATTTGTACTAAGACCTTCTGACTACCCATAATTACCAAGTGTAG
CTGACACATTTACCAGATTTTAAAATTTTAAAAGCTTATTAAGTTTTCTA
GAATCAATAATTTTTGGTAAGAATCGGGTTTTTTATTTCTAAGTTAGATT
AGATTTAGAGTCTTATAGTTCGCATCTGTCAAGTCGCAGTGCCTGTCTGC
GCCGTGATTCCTACTCCTTCGGGAGTAGAACCCATTCTGAAAGCATTCGG
AGGGCTCATATCTATATCTATAATTGCTCTAGTTAAAAAATAGTGTAAAA
TGTTCCATGTTGAGTCGAGAAATAATTGTTTGGTTATTATTTAGCATAAA
ATAATGAAGAGAGGGAAGGATCTTTCTTATCAATTCAAACTGAAATATAA
TATCACCTGTCCTTCATATCAACTTTTTTTGTTTTGTGACTCTTATACTG
CTCAGAATGTCTATTTATTTTGCTGGTATATTGGTACAATGATATTGGAG
AAGAATATGAAAAATCACTCCATAGAATTTGAATCATTTGTTGATTGTTT
GTTTTGGAGTTCAGGTTGAAAATCAAACGAACAGGAAGCCAAGATTGAGA
AGCTAGGGTTCTTTACTTTTTTAAACCTCATTACTGGATTGGTCATTAGC
ATAGAACCATAGCTATACTGTGATCGGCCTGCTATATTGTGATCGGAGTA
AATACTTCACTTGAATGCGCGTTTTTTTATAAGAACAAACTAAATAAGAA
CATAAGCCTTCGATAGCCAAAATCTTATAAACAAGTTAAGAACATTTTAA
GGCTTTGTGGACTCTAAAACACCCAATTTCTTAGGAAAATGGACCAAAAT
ACTCATAAAATGGTGTAATTAAGAACATGTTAAGAAGATTTTTAGGCTTA
AAACTCAAAAAGTTAAGAACATTTGAAGGCTTCAAAAATTTTGGATGTTC
TTATAGAAATCGTGTACTACGAGAAATGGACAAGCTTCGAGTTGATTAGA
GTAAAATCTTCCTACACCCCTGTCTCGGTGACCATTAGTATAGTAGGAAG
TTTATAATTCATCAGTCTATGAAGGGTATTTAAAGTTGACAAAGTTCAAC
GGGGATTTTAAACCAAGATCAACCATAATTTGTCATTATTTATCATCATT
CTTCAATTTATACTTTGTGTAAGCCAAAACCAATAACAGTGCCCAATGTT
AATGATAACAGAGTTTTATACTTGTTTGAGTAAAGAGAACGATTTAAGTT
AATTTCATACTCAAAGTTTCTTGCTATCCACGCAGGATGGCAATCTTCAG
TGAAAATCTTAAACCATTCTTCAATTTATTTTAGCTATAATGGGATATAT
AAAAGAATCAGCAATGAACTGTACAGAAATTGTTTTCACGAAAACAGACA
CGTACCGCACCATACAAATCGTCGTTTTGACATTTTTCTTGTCCATCGTC
ATGCTTAATAACATTTTGGCCATCTATGCAACCCAAAAATCAATATCAAC
GAAATATTGTATTTTTGCTCAACTTTACAATATTTCATACATCAGTAACA
TCATGGCTGCTTTTTCATTGTACGGTGGCAGTTTGTTTATAACCGATTAC
CATGGCGACGCATTCGGCTGCCGGCAATTACCACTTGATCGATATTTCTT
TTTATGTTTTGGAATGTCGAATAACGTTTTGGTTTTGTTGCTAAATACTT
ATTTAAGACGTAAATCGTTGATGGATCCTCTCGCAAGTTGTGATGTGCCA
AGAAGCAAATGGAAAGCTGTCCTAAAGTTCCTCGTCCCATTCTTCCTAGT
CTCGTTAACGCTGTCAGCGATGAATATTGTATTCCAATATGAAGTCCAAA
TGAATTTCTACATTGGAGTTGCAGTTGGGTTTTACGTACCTGTCATGATA
GTTGTTATCGTGTTAAATATACACCTTACATACTTCCTAAACGAAAGTAA
AAAGATTGCCGAAAATATTAATCAACAATCGTCGCGTAACCTAATGAAAG
CTCGTAAAATATTATTAATGATCGTTAAACTACAATCTTTTTATACCTTT
TTATGGATTATCTTGGTCATTTTGATGCATACCATTGGTGTAAAGAACGA
AATCAATTTTGTTATTCTTGAATGGCTTATGCGTGTAGTATACGGGCTAA
GTTTTGTATTAGAGGCTAAAATTTTAATCCGCCGTGACAAAGTAGTTCAA
AAGGTACTTCTGAAAGCATTTCGTAAAATGTCGAAATTTTCGAGGGATGT
TTCGTCAACGATCAGTCGTTCAGCCACAAGAAGCAGTCAAAGCAGTAAAA
GTAAACAGAAAACTGAACCAAGCAGCATTGAAATTCATATGGATCCGGTG
GTTTTAGGATCTACTTCTTCATAAAGAACCCTAAAAACTTTGTAAACTAC
TTATCAGACAATACTTTCGTCCATTAGAGGGACAGTAAACGCGGGAAATA
TATATGCGCAGATTTTACAGCCATCACGGCGGTATACGGGAGAAAAACAA
AAATAGTGGTGGTAGAGGTTGGAACAAACGCTTACACTGTAAACACCTCC
GCAACTGCTTACTCCGCCCCGGGCTAAACTCCACTTTCAAATGTATCCCC
ACCTCTTAAATTATTCTATTTTGAGTGACCTTGTGTAACAACTTATATAT
TGTATATACAATGTAAGATGATTGCTATGTATGTTTCTGAGTCATACACG
ATTCTCGAGAATCAAATTGTTGCGACCCTTATTTTCAAATATAATATTTA
CTATGTAGAGTGCAAACCCATTAATCATTATCTAACGATACATCTTGGCA
ATACTATGGGTTAGTTTAAGGAATAATTGAAAATGTGAACTAGATTTTAT
GACTCTATACTTATTACTATGATTTCTTAAGCAGTAAATGTTTTTATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008192XLOC_008192Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014643-exon-sc0000191-1575043694:460979..461311TCONS_00014643-exon-sc0000191-1575043694:460979..461311Clytia hemisphaericaexon
TCONS_00014643-exon-sc0000191-1575043694:458062..459627TCONS_00014643-exon-sc0000191-1575043694:458062..459627Clytia hemisphaericaexon
TCONS_00014643-exon-sc0000191-1510915933:460979..461311TCONS_00014643-exon-sc0000191-1510915933:460979..461311Clytia hemisphaericaexon
TCONS_00014643-exon-sc0000191-1510915933:458062..459627TCONS_00014643-exon-sc0000191-1510915933:458062..459627Clytia hemisphaericaexon
TCONS_00014643-exon-sc0000191-1491911889:460979..461311TCONS_00014643-exon-sc0000191-1491911889:460979..461311Clytia hemisphaericaexon
TCONS_00014643-exon-sc0000191-1491911889:458062..459627TCONS_00014643-exon-sc0000191-1491911889:458062..459627Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000191supercontigsc0000191:458062..461311 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.167057	0.15091	0.907645	1.22377	0.476057	1.65966	0.68078	1.64246	0.159355	0.63064	0.33443	1.7436	0.222282	0.365728	0.0647372	0.087499	0.0687962	0.299498	0.916502	0.523758	0.118971	0.128012	0.397238	0.313737	0.112765	0.621631	0.253848	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014643 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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