TCONS_00014627 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014627
Unique NameTCONS_00014627
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1878

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014627 ID=TCONS_00014627|Name=TCONS_00014627|organism=Clytia hemisphaerica|type=transcript|length=1878bp
TTCAGAATCGTTAATTAGAAGCAAGAGTTTTAGTTAGTAGTTGGCCAGCG
AAGGAGAAGGAACGAATTTTCTCTTTTACTATTACcgtttttcgttttct
ttcttACTTCGCGCGCGCTGAGAGGATGTTGATTAAAAATGCTGAACGCA
TCATGCGAGATCAGAAATCTCTGAAAAATAACCTTACGAGTATGTGGGTC
AAACTGAGGAAAGCCGTACGCTGGTCACCCTTTATGCAAAGTTACACCAA
GAAGAATTACCGATGGATTCAGCTGGCTGGACATTCTGGTGGATTCAAAC
CAGGAGAAAATGGAGCCATTATGAAAAAATCATCTAAACGTGAAGTGGAT
TGCTTGAAGAGTTTAATGAAAGACCCACTCAAAAGTTACGTGCCCGAATT
CAAGAGACAAACAATGGAGGGTGAAGACCTTTTCATTGAAATGCAAGACT
TGTTAGCCGAATTCGACCATCCAGCTTTCGTCATGGATTGCAAAATTGGC
GTCAGAACATACTTAGAGGATGAAGTTAAGAAGAATCCAAAGCCTAGAGA
GGATTTATACCTGAAAATGATCGCTGTTGATCCAAACGAGCCGACTGAAG
AAGAAAACGCAACTTGCAGTTGTACTAAAGAACGCTACATGCAATTCAGA
GAGAAAATGAGCTCTACCACTGGTCTAGGATTCAGAATCGAAGGAATCAA
GagaGGTGAAAACAACCCGGATAAAGATTTCAAGAAATTAAAATCAGAAG
AGGATATCGCATCCGTCATTCGGAGATTTACGGAGAACAAAAAAGATATT
CAGGCGAAATACATGCAGAGATTGAGAGAAATCAAGAAAGCGCTCGCTGA
ATCACCGTTCTTTCAAAGTCACGAACTGATCGGTAGCTCGCTTTTATTTG
TTCATGACACCAAAGGGAAAGTCGGTGTTTGGCTTATCGATTTCGGTAAA
ACAGTTCCACTGACCAACGGTATGGTCATTGATCACAAATCACCATGGTC
GCTTGGCAACCATGAAGACGGCTATCTGATTGGTCTTGAAAACATCATGA
AGATTTTTGGTGATTTAGAACAAAAATCGAAATCTTGAGCTATCCTGTTG
TGGAAAGTTATTGGTGGAAGGAGATAAATTCTGATTGAGAATTGAGAAAA
CCTATAAACGAGAAGCCCTCAAATTGAGAATACAGAATTCGCATTTGTNG
TTGTGGAAAGTTATTGGTGGAAGGAGATAAATTCTGATTGAGAATTGAGA
AAACCTATAAACGAGAAGCCCTCAAATTGAGAATACAAAATTCGCATTTG
TCGGTTGGATTGGTTGGCACTACAATCTTTTTCAAGAGCACGCACATGTG
TAGCGTAACACGAAACAATGGTTGCTAAGCAACTAAAATTACTTATTGTG
CTTATTTTCCCTGAGTTTGGGGCTGCAATGGACCCATTTCCCTAGTCGAG
CTACGTAATGGTGTCTGAAAACTTTTTATATGTGTCCATTTTTTGTTGGT
TCAATGTTGTTGTAttatttttatagcttttacttttaacttttaaacGT
GTTTTTATTATGTTAGGGTATTAACCTTTGAATGAACTTTTAATTTTGCT
TTGATAGAACTCTCTGtgatttaatgaaaatttaactcAGGTCTTAAGAC
CTGTTATAAACTTATCTAATTACAGAGGGGTCTATCTACACGATACTAAT
TATTTTAATATATGTGTATACATAgtataaatagagctttgtaagTATGG
ATTGTATATATTAATTCTATTATTAACCAACCATCTTTTTGTCAAGATAA
CCAACATTTAAGATATAAAATGAAGATTTAGATACTAAAAaactgttgga
aagatattccaaaGAATACCAAGAAACT
Run BLAST on NCBI

transcript from alignment at sc0000191:197647..202088-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014627 ID=TCONS_00014627|Name=TCONS_00014627|organism=Clytia hemisphaerica|type=transcript|length=4442bp|location=Sequence derived from alignment at sc0000191:197647..202088- (Clytia hemisphaerica)
TTCAGAATCGTTAATTAGAAGCAAGAGTTTTAGTTAGTAGTTGGCCAGCG
AAGGAGAAGGAACGAATTTTCTCTTTTACTATTACCGTTTTTCGTTTTCT
TTCTTACTTCGCGCGCGCTGAGAGGATGTTGATTAAAAATGCTGAACGCA
TCATGCGAGATCAGAAATCTCTGAAAAATAACCTTGTGAGTTTTCAACAT
TTTAAATTTTTTATATGGTGGTTTTTTCCTATCTATCGGTATTTACGCTT
TTGACGGATGAACTTTTGTAATTTCATGTTCTAACCTTAATCTTCACTTT
TGTTTCTTCATTTTGTTCTCATCTTTTTTCATGTTTCTTTCAAGTTGTCT
AAGACTCTGAACTTTAGTTCTTTACTTTTGAAAATTTTAAGGTTCTTCTA
CTGTAATATTTTTCGAAAGAGAATAATATATCAAATTTTCTTTGAAAATG
TCTTTGAAAGTTTATTAGAAAGATGTCATAGAGTTTTTTAAAAAATAATC
TTATAATATTTCAAGATTTTGTATAGGTTGGGTGTTTCAACTTATGACTT
TTATATCACCTTATAATAATGATGATAAATTTCTCTTCTTTTCTACAGAC
GAGTATGTGGGTCAAACTGAGGAAAGCCGTACGCTGGTCACCCTTTATGC
AAAGTTACACCAAGAAGAATTACCGATGGATTCAGCTGGCTGGACATTCT
GGTAAGACTTCAAAATCATTTGATGATATCCAAAAAAATTCTTATTTCAG
ATAAAAGGTGACTTGATTATGTAGTTTGAGTAACGATCCTTGCTAACTTT
GCTAAAACAGGAAATTTGCTTATTGGCATAATAGCTTTCTTAACTAGGCC
TAATTTTTTGTAAGCGCGTAAATCATCAAATTCTTGGCACTCGCGCTTCA
TTAGTGTTCCTAGTTTCGCATATCAAATTGATATTATCCCATCAAGTAAA
TAATTTTTGCCTATATCGTCAAAACTAGATGCCAGAATATTTTACTTTGT
TTCGCTAAAAATATATTGAAAACAAGGATTTCGAAAGGAACTGAGATATT
GTAGGAATTTCACGTACTAAGATTTGGTAATAGATAATTATAGATAATTA
CTAATACTAATGCTTTATAACATGTGTATTATATATTATCAAATGTTAAC
CATTTCTTTTCAACGAAATTATGCAACTTTTTAATCAAAAAAAGATTTTC
TTTATATGTGGAAATACTGTTTTATTTTCAGCTGAAAATTGCATTTCGTC
TTATGAAAGCGATTACGTAAACTTTCAACTCTTTGAGTCTATTCATATGC
TTGAAAGATTATATCAAGAAAAATGGTATTCAAATGCCAATAGATTTGAT
AATATCGCTTGATATCGCGCGTAAACGTGCGCTCAAAGGAAACTTTCCTC
AAAACAAAAAATAGCTTCCTCCTTCAGCCAATATCTTGACCATGAACATT
ATCATCTAGAAAAACAATCAACTTTCAATATCGAAAACAAGAATGTCTTG
ATATTTTTAGAGAAATTTAATTTCTGTGTAATTAATGGTGTTTACCGCGC
GTTTAAGGGTGTTCATTATATAATTGGTTTTGAAATTGGAATGTCTCTAG
GTGGGCCTAATGTTGTTGTTTTTTTCTGGCTAAACATTTATAGCCTAAAT
TTCAATCATTTAAAATTTTCTACTTTCAATCTTTCAGGTGGATTCAAACC
AGGAGAAAATGGAGCCATTATGAAAAAATCATCTAAACGTGAAGTGGATT
GCTTGAAGAGTTTAATGAAAGACCCACTCAAAAGTTACGTGCCCGAATTC
AAGAGACAAACAATGGAGGGTGAAGACCTTTTCATTGAAATGCAAGACTT
GTTAGCCGAATTCGACCATCCAGCTTTCGTCATGGATTGCAAAATTGGCG
TCAGAACATACTTAGAGGATGAAGTTAAGAAGAATCCAAAGCCTAGAGAG
GTAACTAGTCACTCTTTTCTTTAAAGGTAGATAGGTGACCTGTCTCCCTG
TTTCTCTACACGCTGTGAGGTCATTAAAACAACTCTCCTAATCATGTTTC
AATCTAATTGCATTTTGATTACAATTTTTAAGTATTTAAAGTAATAAGGT
TAAACCTTTATCGGTGATTTTACGAAATGACTAACTTTTAATGAATGCGA
TTTCATGAACAATAGATTGGTTGAGAAATTTCTTGTTAAATATAATGACA
CGTCATCCATATAATAATTAGTCTTTAATGCTATGCTGAAATCAGCGAAT
CAAAGCAGCTATAATGACACTCATTGAGAATTAGTCAACCTTTGATGATG
CTTCAATTGATTAGCTTGTCCATCATGCATCAGCAAAGTTTATATTTTCA
TTGTCATCTTTCTTTCAAGGATTTATACCTGAAAATGATCGCTGTTGATC
CAAACGAGCCGACTGAAGAAGAAAACGCAACTTGCAGTTGTACTAAAGAA
CGCTACATGCAATTCAGAGAGAAAATGAGCTCTACCACTGGTCTAGGATT
CAGAATCGAAGGAATCAAGGTAAGACCTCTAGTCTATATTCTTTTTGATA
TTTTGATTTCTTATATGTGAAATGTGCTTGTTTCTAAGTCTCAAAGGCAA
CCCATTTCAATATACAGAAGCAATATTAAAGATTTTATTACTTAACTTGG
TCATTAAAAATCCTTAATTGTAATTGTCTCGCCAAGTATTGGCCACTAAA
AGTGGTGTTGGTCGGTGGATACCTTCAGTAACTATAGCAACCAATTATTG
CTTTACGTCACTCGTAAATTTTAATTGCGTTTCTTTTTTATTTTAGAGAG
GTGAAAACAACCCGGATAAAGATTTCAAGAAATTAAAATCAGAAGAGGAT
ATCGCATCCGTCATTCGGAGATTTACGGAGAACAAAAAAGATATTCAGGT
AGCTAGTCTATAATCATTTACGCATAAGAATTCATGTCTTTTACGTATTT
TTTCAAGCCAAGGTGCAGTTTCCGTCCTAGTAGCGTTGCTTCTCATCCGA
GCAACCAAAACGTATTTCTCCCGACCGAAAAAAAAAACCGCTATGCATTT
ACGTAAAACTAACGGTCTTTAAAAATCGAAACTTACTTCGTCTTCTTCCT
GACGACAGGCGCCTTCGCCGTCATAATAAAAATGTTAACATTAAAAATAT
GAGATTAAAGAATTATGTATGGTCAGTCCATGTTTATATCCTTGGAAATT
AATCCTTCATTTCAATGCCCGTTCAAACGAAGAATTTCCGGGGGAGACGA
TATATTTATAAGGTGTGAGTCAATATTTTTAGGATGTGGGTCATCGTAGT
CTATTTAAAGAAAGATACTGTATTGATAGAGTGAAATTCTTATTGTTTTT
CTTTTGTTCTTTTCCAGGCGAAATACATGCAGAGATTGAGAGAAATCAAG
AAAGCGCTCGCTGAATCACCGTTCTTTCAAAGTCACGAACTGATCGGTAG
CTCGCTTTTATTTGTTCATGACACCAAAGGGAAAGTCGGTGTTTGGCTTA
TCGATTTCGGTAAAACAGTTCCACTGACCAACGGTATGGTCATTGATCAC
AAATCACCATGGTCGCTTGGCAACCATGAAGACGGCTATCTGATTGGTCT
TGAAAACATCATGAAGATTTTTGGTGATTTAGAACAAAAATCGAAATCTT
GAGCTATCCTGTTGTGGAAAGTTATTGGTGGAAGGAGATAAATTCTGATT
GAGAATTGAGAAAACCTATAAACGAGAAGCCCTCAAATTGAGAATACAGA
ATTCGCATTTGTNGTTGTGGAAAGTTATTGGTGGAAGGAGATAAATTCTG
ATTGAGAATTGAGAAAACCTATAAACGAGAAGCCCTCAAATTGAGAATAC
AAAATTCGCATTTGTCGGTTGGATTGGTTGGCACTACAATCTTTTTCAAG
AGCACGCACATGTGTAGCGTAACACGAAACAATGGTTGCTAAGCAACTAA
AATTACTTATTGTGCTTATTTTCCCTGAGTTTGGGGCTGCAATGGACCCA
TTTCCCTAGTCGAGCTACGTAATGGTGTCTGAAAACTTTTTATATGTGTC
CATTTTTTGTTGGTTCAATGTTGTTGTATTATTTTTATAGCTTTTACTTT
TAACTTTTAAACGTGTTTTTATTATGTTAGGGTATTAACCTTTGAATGAA
CTTTTAATTTTGCTTTGATAGAACTCTCTGTGATTTAATGAAAATTTAAC
TCAGGTCTTAAGACCTGTTATAAACTTATCTAATTACAGAGGGGTCTATC
TACACGATACTAATTATTTTAATATATGTGTATACATAGTATAAATAGAG
CTTTGTAAGTATGGATTGTATATATTAATTCTATTATTAACCAACCATCT
TTTTGTCAAGATAACCAACATTTAAGATATAAAATGAAGATTTAGATACT
AAAAAACTGTTGGAAAGATATTCCAAAGAATACCAAGAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008186XLOC_008186Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014627-exon-sc0000191-1575043694:201904..202088TCONS_00014627-exon-sc0000191-1575043694:201904..202088Clytia hemisphaericaexon
TCONS_00014627-exon-sc0000191-1575043694:201388..201490TCONS_00014627-exon-sc0000191-1575043694:201388..201490Clytia hemisphaericaexon
TCONS_00014627-exon-sc0000191-1575043694:200139..200401TCONS_00014627-exon-sc0000191-1575043694:200139..200401Clytia hemisphaericaexon
TCONS_00014627-exon-sc0000191-1575043694:199570..199719TCONS_00014627-exon-sc0000191-1575043694:199570..199719Clytia hemisphaericaexon
TCONS_00014627-exon-sc0000191-1575043694:199191..199292TCONS_00014627-exon-sc0000191-1575043694:199191..199292Clytia hemisphaericaexon
TCONS_00014627-exon-sc0000191-1575043694:197647..198721TCONS_00014627-exon-sc0000191-1575043694:197647..198721Clytia hemisphaericaexon
TCONS_00014627-exon-sc0000191-1510915933:201904..202088TCONS_00014627-exon-sc0000191-1510915933:201904..202088Clytia hemisphaericaexon
TCONS_00014627-exon-sc0000191-1510915933:201388..201490TCONS_00014627-exon-sc0000191-1510915933:201388..201490Clytia hemisphaericaexon
TCONS_00014627-exon-sc0000191-1510915933:200139..200401TCONS_00014627-exon-sc0000191-1510915933:200139..200401Clytia hemisphaericaexon
TCONS_00014627-exon-sc0000191-1510915933:199570..199719TCONS_00014627-exon-sc0000191-1510915933:199570..199719Clytia hemisphaericaexon
TCONS_00014627-exon-sc0000191-1510915933:199191..199292TCONS_00014627-exon-sc0000191-1510915933:199191..199292Clytia hemisphaericaexon
TCONS_00014627-exon-sc0000191-1510915933:197647..198721TCONS_00014627-exon-sc0000191-1510915933:197647..198721Clytia hemisphaericaexon
TCONS_00014627-exon-sc0000191-1491911889:201904..202088TCONS_00014627-exon-sc0000191-1491911889:201904..202088Clytia hemisphaericaexon
TCONS_00014627-exon-sc0000191-1491911889:201388..201490TCONS_00014627-exon-sc0000191-1491911889:201388..201490Clytia hemisphaericaexon
TCONS_00014627-exon-sc0000191-1491911889:200139..200401TCONS_00014627-exon-sc0000191-1491911889:200139..200401Clytia hemisphaericaexon
TCONS_00014627-exon-sc0000191-1491911889:199570..199719TCONS_00014627-exon-sc0000191-1491911889:199570..199719Clytia hemisphaericaexon
TCONS_00014627-exon-sc0000191-1491911889:199191..199292TCONS_00014627-exon-sc0000191-1491911889:199191..199292Clytia hemisphaericaexon
TCONS_00014627-exon-sc0000191-1491911889:197647..198721TCONS_00014627-exon-sc0000191-1491911889:197647..198721Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000191supercontigsc0000191:197647..202088 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.159733	0	1.65831	1.85891	3.13907	3.30197	6.56409	3.15102	7.06212	17.5532	28.0303	39.462	23.0602	18.3095	2.85633	4.96784	21.3759	12.0484	0.851536	0.955966	0	0	0	0.578057	2.47526	0.507671	1.24398	1.49086
Blast
[Close]
BLAST of TCONS_00014627 vs. Swiss-Prot (Human)
Match: IP3KB (Inositol-trisphosphate 3-kinase B OS=Homo sapiens GN=ITPKB PE=1 SV=5)

HSP 1 Score: 305.064 bits (780), Expect = 3.901e-91
Identity = 156/324 (48.15%), Postives = 208/324 (64.20%), Query Frame = 3 
Query:  120 ERMLIKNAERIMR-DQKSLKNNLTSMWVKLRKAVRWSPFMQSYTKKNYRWIQLAGHSGGFKPGENGAIMKKSSKREVDCLKSLMKDPLKSYVPEFKRQTMEGEDLFIEMQDLLAEFDHPAFVMDCKIGVRTYLEDEV---KKNPKPREDLYLKMIAVDPNEPTEEENATCSCTKERYMQFREKMSSTTGLGFRIEGIKRGENNPDKDFKKLKSEEDIASVIRRFTENKKDIQAKYMQRLREIKKALAESPFFQSHELIGSSLLFVHDTKGKVGVWLIDFGKTVPLTNGMVIDHKSPWSLGNHEDGYLIGLENIMKIFGDLEQKS 1079
            ER L  N+  +   DQ+  K  ++  W K++  V WSPF+ S+ KK Y WIQLAGH+G FK   NG I+KK  + E  CL  LM D L+ +VP +    ++  + + +M DLLA+FD P  VMDCK+G+RTYLE+E+   +K P  R+D+Y KMI VDP  PTEEE A  + TK RYMQ+RE +SST  LGFRIEGIK+ +   ++DFKK K+ E +    R FT+   +I   Y  RL+ I+  L  SPFF+ HE+IGSSLLF+HD K +  VW+IDFGKT PL  G  + H  PW  GN EDGYL GL N++ I  ++ Q +
Sbjct:  624 ERTLDPNSAFLHTLDQQ--KPRVSKSWRKIKNMVHWSPFVMSF-KKKYPWIQLAGHAGSFKAAANGRILKKHCESEQRCLDRLMVDVLRPFVPAYHGDVVKDGERYNQMDDLLADFDSPC-VMDCKMGIRTYLEEELTKARKKPSLRKDMYQKMIEVDPEAPTEEEKAQRAVTKPRYMQWRETISSTATLGFRIEGIKKEDGTVNRDFKKTKTREQVTEAFREFTKGNHNILIAYRDRLKAIRTTLEVSPFFKCHEVIGSSLLFIHDKKEQAKVWMIDFGKTTPLPEGQTLQHDVPWQEGNREDGYLSGLNNLVDILTEMSQDA 943
The following BLAST results are available for this feature:
BLAST of TCONS_00014627 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IP3KB3.901e-9148.15Inositol-trisphosphate 3-kinase B OS=Homo sapiens ... [more]
back to top