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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014623 ID=TCONS_00014623|Name=TCONS_00014623|organism=Clytia hemisphaerica|type=transcript|length=2005bpRun BLAST on NCBI protein sequence of TCONS_00014623-protein >TCONS_00014623-protein ID=TCONS_00014623-protein|Name=TCONS_00014623-protein|organism=Clytia hemisphaerica|type=polypeptide|length=608bp MSWNLFGSKNNKGRGRGMTQEGYYNPHNGGGYGMGNRTESAPVQSNETTARun BLAST on NCBI transcript from alignment at sc0000191:143172..159492- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014623 ID=TCONS_00014623|Name=TCONS_00014623|organism=Clytia hemisphaerica|type=transcript|length=16321bp|location=Sequence derived from alignment at sc0000191:143172..159492- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000191:143172..159492- >TCONS_00014623 ID=TCONS_00014623|Name=TCONS_00014623|organism=Clytia hemisphaerica|type=CDS|length=21924bp|location=Sequence derived from alignment at sc0000191:143172..159492- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00014623 vs. Swiss-Prot (Human)
Match: MACD2 (O-acetyl-ADP-ribose deacetylase MACROD2 OS=Homo sapiens GN=MACROD2 PE=1 SV=1) HSP 1 Score: 231.106 bits (588), Expect = 1.444e-67 Identity = 116/231 (50.22%), Postives = 154/231 (66.67%), Query Frame = 2
Query: 359 LKKSRAERRQSYQCGNRFKTLND-VPMYSVFN-KTYFKGKIDED------AYRSNIDLASKVSLWQGDMTCLEIDAVVNAANESLLGGGGIDGAIHRAAGRSLVEECRTLNGSRTGFTKITGGHQLPARYILHTVGP------RGENRRKLQECYESCLQIVRERNLKSIAFCCISTGIFGYPNENAAHVALSTVRNWLQKYGDEVDRIIFCVFLQTDFDIYSRLMGSKYF 1009
LK + ERR+ Y L D +P+ S+ + K KGK D + L KVSL++GD+T LE+DA+VNAAN SLLGGGG+DG IHRAAG L+ ECR LNG TG KIT G+ LPA+Y++HTVGP G ++ L CY+S L++V+E N++S+AF CISTGI+G+PNE AA +AL+T++ WL K EVDRIIFCVFL+ DF IY + M +++F
Sbjct: 19 LKMTLEERRKEY--------LRDYIPLNSILSWKEEMKGKGQNDEENTQETSQVKKSLTEKVSLYRGDITLLEVDAIVNAANASLLGGGGVDGCIHRAAGPCLLAECRNLNGCDTGHAKITCGYDLPAKYVIHTVGPIARGHINGSHKEDLANCYKSSLKLVKENNIRSVAFPCISTGIYGFPNEPAAVIALNTIKEWLAKNHHEVDRIIFCVFLEVDFKIYKKKM-NEFF 240 The following BLAST results are available for this feature:
BLAST of TCONS_00014623 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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