|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014618 ID=TCONS_00014618|Name=TCONS_00014618|organism=Clytia hemisphaerica|type=transcript|length=1953bp
tataatgataataataCAATGATCGTACTGGGATAATATTAGTCTGTATA
AACTATAATTTGtcctttcaattattttttgcttacGACTGAACTAGTCG
CCTAGCATGCTATACTACTATGAAGAGTATCATTTTGCTTTGGGCCTCGA
TACATCCATTTAATCTAAGTATTATTCTATCGCTAATAAAATTACTTATG
TTTTATCTGGAGGCTTATCCACTTTGCCAGATTCAAACGGTAAAGTTCTG
TTTGATAGCAAATCTTGGTCATTGGTGTTGCtcctaatttttatttttaa
gttgtATTAAAAAAACCAGATAATCAGTGTTGCAAAATCTGTCCATTTGA
ATTTTGTAACATGGATTTCCGTCCGAGCTAAGCCCTTGATAGCAGAAGTT
GAAATCAGAATTTAGACAATCCGTTCTTATTCACCAAAACCGGTCGTAAC
ACTGGTTAATGTATATCTGAGGGTTGGCTTTGTTTTCCTGTTAATCTTGT
CCAATCACTTTCGTCGTAGACCCTGACGAGATACCCGGCTATTGGTACAG
TTTGGTCGGTGTGGTGGTTCACACTGGAACGGCAGAAGGTGGACATTATT
ATAGTTTCATACGTGACCGAAGCACGCCCAAGGAGAATAGTTGGTACCTT
TTCAACGACGCAGAAGTTAAACATTTTGATCCTAATCAAATCGCCGCTGA
ATGTTTTGGTGGTGAAATGACCGTgagtttttataaattttttacttttt
tataaagaaTCGTTTCATTCATTGtcttgaaaaaagtaaaataaccAAGA
TCGTATGATCAATCAGTTGCGTGTAAAAAAGGtaggtttttctttttctt
aaaaattcgtATTTTTATTCTATGTAATTAAATCCATGTTTTCCTTGTTT
GTCGATCATACCATAAACTATGACGGAATTCTCATCCCCGTAATAAATGT
CTGCAGGTACGTTATTAATGGACCATCGCTGAAAGTTGTCGCCAGTGCCT
GCTCTTTCCATTTTCAGTGCTTTCTCTGCATCTCTCGGGTAAAAAACTTT
GAATATTGCTGTATGCCAGACTTCACTGCTAAGACCCTCCACACAAATCA
CAGTATTATGCCATTGCGGTACTACCCTCTTTTTTCTCTGCGACACCAAA
TACAATACATCGTGTTTCTCCGTCATGTTTTTTCGAAGGAAGAAATAATC
ATTCGAATTGTATACTTTTCCATTTTCCATAAAGCTCCAAATGTCCTCAA
ACCATTCATTGTAAGAGGTATATAGATTGAAATTCATGGTCTTTCCTTCT
ATAAATTTCTCTGCACCCCACTCCAACTTATGCATTTCTGACAATGTACT
TCTATCTCCCATGTGAGGGATTTCTGTAATGTTTTGTTTcgtttctaatt
ttctttctaATTCATCGACTCTGGATTGGAGCAATTGATTTTCCTTTCCC
GATGATTccattttttgttcaatttgaaGCATTTTCTTTGCTAACGCTTC
GCCCCCGTCTTCATTTATCTTTGACCTACCGCCACCATTCTCTGACGACT
TCAAATTCAACATTTGAACTTGATGTTTTAGCGATTGAATCTCCGTATCT
TTGGTCATCAGTTTCATTGCGTTTTGATTTTCCATCTCCATAAATTTCAC
CTTCTGTTGATTCTCCAGCTCTAATATCTTCattctactttcgttttctt
gttGCAATAACTTGATTTTATTTTCGAACATCAATGCTTGTATTTTAAGT
TCATAGTCTTCCTTcagtttgttgttttgtttgagTGTCTCGACTTCTTC
TGTATCCTGTTTTCCAGTCGTTCTGGAAGGATCATTAGCGCTGTGAGCTG
TATCCATTTTCCTTGGTTTACGTTTTCTACAAGTCTCATCTGCTTTCCTC
TTTCACCCTTATCACATATGCAATAAACCTCAGAACATTACTTGTGATAT
TTT Run BLAST on NCBI transcript from alignment at sc0000191:335853..337805+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014618 ID=TCONS_00014618|Name=TCONS_00014618|organism=Clytia hemisphaerica|type=transcript|length=1953bp|location=Sequence derived from alignment at sc0000191:335853..337805+ (Clytia hemisphaerica)
tataatgataataataCAATGATCGTACTGGGATAATATTAGTCTGTATA
AACTATAATTTGtcctttcaattattttttgcttacGACTGAACTAGTCG
CCTAGCATGCTATACTACTATGAAGAGTATCATTTTGCTTTGGGCCTCGA
TACATCCATTTAATCTAAGTATTATTCTATCGCTAATAAAATTACTTATG
TTTTATCTGGAGGCTTATCCACTTTGCCAGATTCAAACGGTAAAGTTCTG
TTTGATAGCAAATCTTGGTCATTGGTGTTGCtcctaatttttatttttaa
gttgtATTAAAAAAACCAGATAATCAGTGTTGCAAAATCTGTCCATTTGA
ATTTTGTAACATGGATTTCCGTCCGAGCTAAGCCCTTGATAGCAGAAGTT
GAAATCAGAATTTAGACAATCCGTTCTTATTCACCAAAACCGGTCGTAAC
ACTGGTTAATGTATATCTGAGGGTTGGCTTTGTTTTCCTGTTAATCTTGT
CCAATCACTTTCGTCGTAGACCCTGACGAGATACCCGGCTATTGGTACAG
TTTGGTCGGTGTGGTGGTTCACACTGGAACGGCAGAAGGTGGACATTATT
ATAGTTTCATACGTGACCGAAGCACGCCCAAGGAGAATAGTTGGTACCTT
TTCAACGACGCAGAAGTTAAACATTTTGATCCTAATCAAATCGCCGCTGA
ATGTTTTGGTGGTGAAATGACCGTgagtttttataaattttttacttttt
tataaagaaTCGTTTCATTCATTGtcttgaaaaaagtaaaataaccAAGA
TCGTATGATCAATCAGTTGCGTGTAAAAAAGGtaggtttttctttttctt
aaaaattcgtATTTTTATTCTATGTAATTAAATCCATGTTTTCCTTGTTT
GTCGATCATACCATAAACTATGACGGAATTCTCATCCCCGTAATAAATGT
CTGCAGGTACGTTATTAATGGACCATCGCTGAAAGTTGTCGCCAGTGCCT
GCTCTTTCCATTTTCAGTGCTTTCTCTGCATCTCTCGGGTAAAAAACTTT
GAATATTGCTGTATGCCAGACTTCACTGCTAAGACCCTCCACACAAATCA
CAGTATTATGCCATTGCGGTACTACCCTCTTTTTTCTCTGCGACACCAAA
TACAATACATCGTGTTTCTCCGTCATGTTTTTTCGAAGGAAGAAATAATC
ATTCGAATTGTATACTTTTCCATTTTCCATAAAGCTCCAAATGTCCTCAA
ACCATTCATTGTAAGAGGTATATAGATTGAAATTCATGGTCTTTCCTTCT
ATAAATTTCTCTGCACCCCACTCCAACTTATGCATTTCTGACAATGTACT
TCTATCTCCCATGTGAGGGATTTCTGTAATGTTTTGTTTcgtttctaatt
ttctttctaATTCATCGACTCTGGATTGGAGCAATTGATTTTCCTTTCCC
GATGATTccattttttgttcaatttgaaGCATTTTCTTTGCTAACGCTTC
GCCCCCGTCTTCATTTATCTTTGACCTACCGCCACCATTCTCTGACGACT
TCAAATTCAACATTTGAACTTGATGTTTTAGCGATTGAATCTCCGTATCT
TTGGTCATCAGTTTCATTGCGTTTTGATTTTCCATCTCCATAAATTTCAC
CTTCTGTTGATTCTCCAGCTCTAATATCTTCattctactttcgttttctt
gttGCAATAACTTGATTTTATTTTCGAACATCAATGCTTGTATTTTAAGT
TCATAGTCTTCCTTcagtttgttgttttgtttgagTGTCTCGACTTCTTC
TGTATCCTGTTTTCCAGTCGTTCTGGAAGGATCATTAGCGCTGTGAGCTG
TATCCATTTTCCTTGGTTTACGTTTTCTACAAGTCTCATCTGCTTTCCTC
TTTCACCCTTATCACATATGCAATAAACCTCAGAACATTACTTGTGATAT
TTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014618-exon-sc0000191-1491911889:335853..337805 | TCONS_00014618-exon-sc0000191-1491911889:335853..337805 | Clytia hemisphaerica | exon |
| TCONS_00014618-exon-sc0000191-1510915933:335853..337805 | TCONS_00014618-exon-sc0000191-1510915933:335853..337805 | Clytia hemisphaerica | exon |
| TCONS_00014618-exon-sc0000191-1575043694:335853..337805 | TCONS_00014618-exon-sc0000191-1575043694:335853..337805 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000191 | supercontig | sc0000191:335853..337805 + |
Blast
BLAST of TCONS_00014618 vs. Swiss-Prot (Human)
Match: UBP34 (Ubiquitin carboxyl-terminal hydrolase 34 OS=Homo sapiens GN=USP34 PE=1 SV=2) HSP 1 Score: 105.145 bits (261), Expect = 5.033e-23 Identity = 50/78 (64.10%), Postives = 54/78 (69.23%), Query Frame = 3
Query: 540 YWYSLVGVVVHTGTAEGGHYYSFIRDRSTP---KENSWYLFNDAEVKHFDPNQIAAECFGGEMTVSFY-----KFFTF 749
Y Y L+GV VHTGTA+GGHYYSFIRD P K N WYLFNDAEVK FD Q+A+ECFGGEMT Y KF F
Sbjct: 2146 YEYDLIGVTVHTGTADGGHYYSFIRDIVNPHAYKNNKWYLFNDAEVKPFDSAQLASECFGGEMTTKTYDSVTDKFMDF 2223
The following BLAST results are available for this feature:
|
