TCONS_00014611 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014611
Unique NameTCONS_00014611
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length598

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014611 ID=TCONS_00014611|Name=TCONS_00014611|organism=Clytia hemisphaerica|type=transcript|length=598bp
CTTTTTTCACcgataaaacaaacaaaaatagtCAAGAGGAGAGAAGCACA
GAAGCAACTAAACATGGCAACATATCATGGGAAGTtgtttattgttcttt
ttttaacGGTGGCAATTTTTAATTGCATAGATGCAGTGCTTTATCATCTG
GTTTCAAACCATGGCAACCCTTCTTTGACACCCTTACGAAAGATGGAAAC
TAAATATCATCAACAATGTGTTAGCGTTTGTGCAACATGGAATCAGTGTC
GCTCTTACACAATTCAAAAAAAGAGTGGAAACCAGTTTCAATGTCAGTTC
TATGATACAGCTTACGTTAAGGAAGATCTGGTTTCCactaacaaaaaaaa
ttattattttgtcGACGATGAAGCAGCAAATACTCCATAGATTGAAAAGA
ATGGTACAATTTAGGAGGAAGGGTGCCGGACGTGTATACAATCAACTGGA
TGGGGCGGATGAACAAAGAAGTAAGATGTAATATGGAAATGAGGGCGGTT
GTTGGCTTGTCTTTTACCGCCGTACAAATCAGTTCAAAATAACTTTTGAC
AGAGATTGGATAACCTACAAAGCTGGCTTCGGTGACGTAAACAATGAG
Run BLAST on NCBI

protein sequence of TCONS_00014611-protein

>TCONS_00014611-protein ID=TCONS_00014611-protein|Name=TCONS_00014611-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
LFSPIKQTKIVKRREAQKQLNMATYHGKLFIVLFLTVAIFNCIDAVLYHL
VSNHGNPSLTPLRKMETKYHQQCVSVCATWNQCRSYTIQKKSGNQFQCQF
YDTAYVKEDLVSTNKKNYYFVDDEAANTP
Run BLAST on NCBI

transcript from alignment at sc0000190:420962..421559

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014611 ID=TCONS_00014611|Name=TCONS_00014611|organism=Clytia hemisphaerica|type=transcript|length=598bp|location=Sequence derived from alignment at sc0000190:420962..421559 (Clytia hemisphaerica)
CTCATTGTTTACGTCACCGAAGCCAGCTTTGTAGGTTATCCAATCTCTGT
CAAAAGTTATTTTGAACTGATTTGTACGGCGGTAAAAGACAAGCCAACAA
CCGCCCTCATTTCCATATTACATCTTACTTCTTTGTTCATCCGCCCCATC
CAGTTGATTGTATACACGTCCGGCACCCTTCCTCCTAAATTGTACCATTC
TTTTCAATCTATGGAGTATTTGCTGCTTCATCGTCgacaaaataataatt
ttttttgttagtGGAAACCAGATCTTCCTTAACGTAAGCTGTATCATAGA
ACTGACATTGAAACTGGTTTCCACTCTTTTTTTGAATTGTGTAAGAGCGA
CACTGATTCCATGTTGCACAAACGCTAACACATTGTTGATGATATTTAGT
TTCCATCTTTCGTAAGGGTGTCAAAGAAGGGTTGCCATGGTTTGAAACCA
GATGATAAAGCACTGCATCTATGCAATTAAAAATTGCCACCgttaaaaaa
agaacaataaacaACTTCCCATGATATGTTGCCATGTTTAGTTGCTTCTG
TGCTTCTCTCCTCTTGactatttttgtttgttttatcgGTGAAAAAAG

Coding sequence (CDS) from alignment at sc0000190:420962..421559

>TCONS_00014611 ID=TCONS_00014611|Name=TCONS_00014611|organism=Clytia hemisphaerica|type=CDS|length=390bp|location=Sequence derived from alignment at sc0000190:420962..421559 (Clytia hemisphaerica)
CTATGGAGTATTTGCTGCTTCATCGTCgacaaaataataattttttttgt
tagtGGAAACCAGATCTTCCTTAACGTAAGCTGTATCATAGAACTGACAT
TGAAACTGGTTTCCACTCTTTTTTTGAATTGTGTAAGAGCGACACTGATT
CCATGTTGCACAAACGCTAACACATTGTTGATGATATTTAGTTTCCATCT
TTCGTAAGGGTGTCAAAGAAGGGTTGCCATGGTTTGAAACCAGATGATAA
AGCACTGCATCTATGCAATTAAAAATTGCCACCgttaaaaaaagaacaat
aaacaACTTCCCATGATATGTTGCCATGTTTAGTTGCTTCTGTGCTTCTC
TCCTCTTGactatttttgtttgttttatcgGTGAAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008177XLOC_008177Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014611-exon-sc0000190-1491911889:420962..421559TCONS_00014611-exon-sc0000190-1491911889:420962..421559Clytia hemisphaericaexon
TCONS_00014611-exon-sc0000190-1510915933:420962..421559TCONS_00014611-exon-sc0000190-1510915933:420962..421559Clytia hemisphaericaexon
TCONS_00014611-exon-sc0000190-1575043694:420962..421559TCONS_00014611-exon-sc0000190-1575043694:420962..421559Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014611-proteinTCONS_00014611-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000190supercontigsc0000190:420962..421559 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.182405	0.177873	1.23917	1.41439	0	0	0	0.109773	0	0	0	0	0.72787	0.251967	0	0	0.0684653	0.210524	0.872552	1.62322	1.41087	2.45162	1.35942	1.33098	1.27296	2.79652	0.500226	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014611 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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