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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014589 ID=TCONS_00014589|Name=TCONS_00014589|organism=Clytia hemisphaerica|type=transcript|length=2204bp
ACACAACTTCATGAAAATGCAATATATAACAACATGCTCTTAAATCACTG
ATATACTTGGATCGATAGTTTATACAAAATANACAAGTTCATGAAAATGC
AATATATAACAACATGCTCTTAAATCACTGATGTACTTGGATTGATAGTT
TAtacaaaatgttttatttatctTTCAGGTGAAAAGCCGTACAGTTGTGA
TACGGCTGGTTGCGAAAAGACTTTCAATACGTTATACAGACTTCGTGCAC
ACCAAAGGCTTCACCAAGGAAACTTATTCTCCTGTTATTTTGAAGAATGT
AAAAAAGGATTCACCACTCGTAGTGATCTAACAAAACATATTCGAATTCA
CACGCAAGAGAGACCGTTCCATTGCAAAGAGGACGACTGTAAACAATCCT
TTTTAGCGTCACATCATTTGAAAGCACACCAGAGAACACACTCTGGCGAA
AAACCATTCACATGTCAGCAAGATGGATGTGAAAAAGCGTTCTCATCCAA
ATACGgATTAAAAGTTCACTTGAAGCGTCACAAGAGTACCGGTGATGATC
TGACATGTCCGGAGAGCGGTTGCAACAAAGTTTTTGCAACAGTCTCCAGC
TTCAATACACACATTCGTAATAAACATTCATCGAGATACGACGATCTCTC
CATCAAAATTACCCCTCGTGAAACGCAAAATATCGCCCCAGCACCTGAAG
CCAGCTCTTCGCATCCAGACATTCTCCCGCCGCGTTTGATTACCATAAAA
CAAGAAGACGGAGTTACAAGCACGTGTAGCAACACGATAGAGAAAAAAGA
GACAAATATACATGAATTAGATCGATCGGAGAATTTCCTGGAAGCTTTAG
TGTCAAATTTAAGTGATACCGTAGATTCAATACCAACAACACAGCTAGAT
CAAAATACGGAATTCAATCAATCGCTATTTGCAAGCAACAAAACCACAAA
GATCGAAGATAAAAGTATAGAGGACTCTATACAAACCAATTTCTCCCAAC
AAACCTTCTTCCAACCACAATATACAGAAGCTCGTTTCAATTACAGCTCC
TCATCGACCGAAGAAACGGGAGCTATATCCACCAGTAACCCATCGGATAT
TCTGAATCTACTGCATCAGTCATTTTTTACAATTGACGACAGCGAAGCTT
CATTGAAATTACTCTCATTTTTAGCGACACAAGGAAATCTACAAATTATC
GGTGAACAACAAGGAGTAAACAACCAAATAAGCTCTAGCCCAAATCTAGA
TCTCATCACAGATGGTCAACGTCAAAATCCATCTCAGCCACCACAGCCTC
AACAACCGTTTTATGGTTTCGCACCAGCTGTTACTAATCCGGTGGCCCAA
CAAGGTCAACCACAACCAACACAACCGATCAATATTCAACAACCAATTTC
AAATAATaatttaaataatatttttcaacaacaGCCACAACATCAATCAC
ATCAAAGTTATTTTGCGAACCAACAAAATTTAGTAAATCAACAACAACCT
GATAATAATTTTCAACAAACtttacaaaatataaacattCAAAGTTATCA
ATCTTTACTTCAGCAGCCGCAACAACAGTCGAATTTTACTCCTCCAAATT
TACCGAAAAACACTTACACAACACTTTTTAATGATACCCCTGCTACTCGT
TCAAGTCATAACTTAATTTCCGAATCTCCGAGAAATCCGAACTCACAAAT
TCCAATTACAACTGCTCTTGGTTCTTTTCCGACCTCAACAATGAACTTTC
AATAATCAAGTGTCATTCTATCGGGTTGATTACAGTAGATTACCAGGAAA
AGATTTAAACTCATTTCCCAAATTCATACTTTCAATAGGCATTAAGTATC
GCAGTAAGAATCTTACGACTTTATGACTTTATGATTGTTTTATTCGTCTT
ATACAGTTCGGAAAAAACATCAATGTGAAAAACGCATATGTTTTTAAAGA
GATTTGTAAGATTGATGGAGCTTTTTAACGGAACTTAActttatttgcaa
attttaaatagggagaaatttttagtttcacGGTTTTTGATTTTATCTTA
TAGATattttctttgcttgaaaattcgttctttaaaattttgaagcaTTC
TTAGCTGAAAATACTGAATATTATTGTGAATTGAGCCTTGAAGGCCaaga
aatcttgaaataacTCTGTGTTAATCATTTTAAGAATCTACGACTTTTGA
GAAg Run BLAST on NCBI transcript from alignment at sc0000190:104476..107030- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014589 ID=TCONS_00014589|Name=TCONS_00014589|organism=Clytia hemisphaerica|type=transcript|length=2555bp|location=Sequence derived from alignment at sc0000190:104476..107030- (Clytia hemisphaerica)
ACACAACTTCATGAAAATGCAATATATAACAACATGCTCTTAAATCACTG
ATATACTTGGATCGATAGTTTATACAAAATANACAAGTTCATGAAAATGC
AATATATAACAACATGCTCTTAAATCACTGATGTACTTGGATTGATAGTT
TATACAAAATGTTTTATTTATCTTTCAGGTGAAAAGCCGTACAGTTGTGA
TACGGCTGGTTGCGAAAAGACTTTCAATACGTTATACAGACTTCGTGCAC
ACCAAAGGCTTCACCAAGGAAACTTATTCTCCTGTTATTTTGAAGAATGT
AAAAAAGGATTCACCACTCGTAGTGATCTAACAAAACATATTCGAATTCA
CACGCAAGAGAGACCGTTCCATTGCAAAGAGGACGACTGTAAACAATCCT
TTTTAGCGTCACATCATTTGAAAGCACACCAGAGAACACACTCTGGCGAA
AAACCATTCACATGTCAGCAAGATGGATGTGAAAAAGCGTTCTCATCCAA
ATACGGTAAGACTGTTTAGTTGTGAACTTAAGTCTAGAACTTGTGAATAC
AATTTTCGATAATTTTTAGCAAAGAAAAAAGCATGGCACAAAAAGGTTCA
TTTGATTTTTTTCTTAATTTAAGAAATCTAATTTATTTTTCTTAATTTCG
GAGTGAAGTTCTTTTCGAAATTTTCAAAAACTAGGTGGTCTTGCTGTAAA
AATACATGGAAACGAAGAAAAAAATGTAAAGTTTTATGACAAAAGGGTGT
ATTCTCTCTGACTTTGTTGTTCTCCTGTGTCTACCACGAGTCTGGAGATT
CGGTTCAGCTGTACAAAGTGCACATTCCATAGACATATTTATGTTCTTTT
TTTCAGGATTAAAAGTTCACTTGAAGCGTCACAAGAGTACCGGTGATGAT
CTGACATGTCCGGAGAGCGGTTGCAACAAAGTTTTTGCAACAGTCTCCAG
CTTCAATACACACATTCGTAATAAACATTCATCGAGATACGACGATCTCT
CCATCAAAATTACCCCTCGTGAAACGCAAAATATCGCCCCAGCACCTGAA
GCCAGCTCTTCGCATCCAGACATTCTCCCGCCGCGTTTGATTACCATAAA
ACAAGAAGACGGAGTTACAAGCACGTGTAGCAACACGATAGAGAAAAAAG
AGACAAATATACATGAATTAGATCGATCGGAGAATTTCCTGGAAGCTTTA
GTGTCAAATTTAAGTGATACCGTAGATTCAATACCAACAACACAGCTAGA
TCAAAATACGGAATTCAATCAATCGCTATTTGCAAGCAACAAAACCACAA
AGATCGAAGATAAAAGTATAGAGGACTCTATACAAACCAATTTCTCCCAA
CAAACCTTCTTCCAACCACAATATACAGAAGCTCGTTTCAATTACAGCTC
CTCATCGACCGAAGAAACGGGAGCTATATCCACCAGTAACCCATCGGATA
TTCTGAATCTACTGCATCAGTCATTTTTTACAATTGACGACAGCGAAGCT
TCATTGAAATTACTCTCATTTTTAGCGACACAAGGAAATCTACAAATTAT
CGGTGAACAACAAGGAGTAAACAACCAAATAAGCTCTAGCCCAAATCTAG
ATCTCATCACAGATGGTCAACGTCAAAATCCATCTCAGCCACCACAGCCT
CAACAACCGTTTTATGGTTTCGCACCAGCTGTTACTAATCCGGTGGCCCA
ACAAGGTCAACCACAACCAACACAACCGATCAATATTCAACAACCAATTT
CAAATAATAATTTAAATAATATTTTTCAACAACAGCCACAACATCAATCA
CATCAAAGTTATTTTGCGAACCAACAAAATTTAGTAAATCAACAACAACC
TGATAATAATTTTCAACAAACTTTACAAAATATAAACATTCAAAGTTATC
AATCTTTACTTCAGCAGCCGCAACAACAGTCGAATTTTACTCCTCCAAAT
TTACCGAAAAACACTTACACAACACTTTTTAATGATACCCCTGCTACTCG
TTCAAGTCATAACTTAATTTCCGAATCTCCGAGAAATCCGAACTCACAAA
TTCCAATTACAACTGCTCTTGGTTCTTTTCCGACCTCAACAATGAACTTT
CAATAATCAAGTGTCATTCTATCGGGTTGATTACAGTAGATTACCAGGAA
AAGATTTAAACTCATTTCCCAAATTCATACTTTCAATAGGCATTAAGTAT
CGCAGTAAGAATCTTACGACTTTATGACTTTATGATTGTTTTATTCGTCT
TATACAGTTCGGAAAAAACATCAATGTGAAAAACGCATATGTTTTTAAAG
AGATTTGTAAGATTGATGGAGCTTTTTAACGGAACTTAACTTTATTTGCA
AATTTTAAATAGGGAGAAATTTTTAGTTTCACGGTTTTTGATTTTATCTT
ATAGATATTTTCTTTGCTTGAAAATTCGTTCTTTAAAATTTTGAAGCATT
CTTAGCTGAAAATACTGAATATTATTGTGAATTGAGCCTTGAAGGCCAAG
AAATCTTGAAATAACTCTGTGTTAATCATTTTAAGAATCTACGACTTTTG
AGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014589-exon-sc0000190-1575043694:106526..107030 | TCONS_00014589-exon-sc0000190-1575043694:106526..107030 | Clytia hemisphaerica | exon |
| TCONS_00014589-exon-sc0000190-1575043694:104476..106174 | TCONS_00014589-exon-sc0000190-1575043694:104476..106174 | Clytia hemisphaerica | exon |
| TCONS_00014589-exon-sc0000190-1510915933:106526..107030 | TCONS_00014589-exon-sc0000190-1510915933:106526..107030 | Clytia hemisphaerica | exon |
| TCONS_00014589-exon-sc0000190-1510915933:104476..106174 | TCONS_00014589-exon-sc0000190-1510915933:104476..106174 | Clytia hemisphaerica | exon |
| TCONS_00014589-exon-sc0000190-1491911889:106526..107030 | TCONS_00014589-exon-sc0000190-1491911889:106526..107030 | Clytia hemisphaerica | exon |
| TCONS_00014589-exon-sc0000190-1491911889:104476..106174 | TCONS_00014589-exon-sc0000190-1491911889:104476..106174 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000190 | supercontig | sc0000190:104476..107030 - |
Blast
BLAST of TCONS_00014589 vs. Swiss-Prot (Human)
Match: MTF1 (Metal regulatory transcription factor 1 OS=Homo sapiens GN=MTF1 PE=1 SV=2) HSP 1 Score: 171.4 bits (433), Expect = 1.118e-44 Identity = 75/121 (61.98%), Postives = 88/121 (72.73%), Query Frame = 1
Query: 181 EKPYSCDTAGCEKTFNTLYRLRAHQRLHQGNLFSCYFEECKKGFTTRSDLTKHIRIHTQERPFHCKEDDCKQSFLASHHLKAHQRTHSGEKPFTCQQDGCEKAFSSKYGLKVHLKRHKSTG 543
EKP+ CD GCEK FNTLYRL+AHQRLH G F+C E C K FTT SDL KHIR HT E+PF C D C ++F ASHHLK H RTH+GE+PF C +GCEK FS++Y LK H+K H + G
Sbjct: 197 EKPFECDVQGCEKAFNTLYRLKAHQRLHTGKTFNCESEGCSKYFTTLSDLRKHIRTHTGEKPFRCDHDGCGKAFAASHHLKTHVRTHTGERPFFCPSNGCEKTFSTQYSLKSHMKGHDNKG 317 HSP 2 Score: 124.405 bits (311), Expect = 3.256e-29 Identity = 66/177 (37.29%), Postives = 91/177 (51.41%), Query Frame = 1
Query: 184 KPYSCDTAGCEKTFNTLYRLRAHQRLHQGNL-FSCYFEECKKGFTTRSDLTKHIRIHTQERPFHCKEDDCKQSFLASHHLKAHQ-----------------------------RTHSGEKPFTCQQDGCEKAFSSKYGLKVHLKRHKSTGD-DLTCPESGCNKVFATVSSFNTHIRN 621
K Y C GC +T++T LR HQ+ H+G F C E C K F T L H+R+HT+E+PF C C+++F + LKAHQ RTH+GEKPF C DGC KAF++ + LK H++ H TG+ CP +GC K F+T S +H++
Sbjct: 138 KRYQCTFEGCPRTYSTAGNLRTHQKTHRGEYTFVCNQEGCGKAFLTSYSLRIHVRVHTKEKPFECDVQGCEKAFNTLYRLKAHQRLHTGKTFNCESEGCSKYFTTLSDLRKHIRTHTGEKPFRCDHDGCGKAFAASHHLKTHVRTH--TGERPFFCPSNGCEKTFSTQYSLKSHMKG 312
The following BLAST results are available for this feature:
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