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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014573 ID=TCONS_00014573|Name=TCONS_00014573|organism=Clytia hemisphaerica|type=transcript|length=2096bpRun BLAST on NCBI protein sequence of TCONS_00014573-protein >TCONS_00014573-protein ID=TCONS_00014573-protein|Name=TCONS_00014573-protein|organism=Clytia hemisphaerica|type=polypeptide|length=698bp IYMDNSALGWRPLANAWLAKQDQTYFHVLQRSFHKSVDRCLQFVQDEARCRun BLAST on NCBI transcript from alignment at sc0000190:357093..460450+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014573 ID=TCONS_00014573|Name=TCONS_00014573|organism=Clytia hemisphaerica|type=transcript|length=103358bp|location=Sequence derived from alignment at sc0000190:357093..460450+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000190:357093..460450+ >TCONS_00014573 ID=TCONS_00014573|Name=TCONS_00014573|organism=Clytia hemisphaerica|type=CDS|length=37692bp|location=Sequence derived from alignment at sc0000190:357093..460450+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00014573 vs. Swiss-Prot (Human)
Match: DYH5 (Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3) HSP 1 Score: 179.104 bits (453), Expect = 2.587e-46 Identity = 161/703 (22.90%), Postives = 307/703 (43.67%), Query Frame = 2
Query: 2 IYMDNSALGWRPLANAWLAKQDQTYFHVLQRSFHKSVDRCLQF-VQDEARCCVTLSEGXXXXXXXXXXXXXXRDHQESLAGELHIERLYLFSLIWTFGSLLIHDQERH---QFXXXXXXXXXXXPDDDREISVFDYFVDESGEWDSWATRLSE-ASLDESIDSFGQIFVETVSSHRTKFLISQYMEMGNNILLAGPTGCGKTKIIQDLLKNTESKNRVTLNIAFSNSTDASFLQNFIAGNLHHRQGFVYGAKKKKTLRIFIDDIHLPKHDICDVQSSNQLLRQLVDQQMIYTLQSKHFKPKYIEGMNLLTSLNPTTLDSKSGLQRLLGRFGVFYLPQPNEKEIFSMASVILEANMSYEQGMSLPQHLHSLIVELS--TKIVSAVTMNLQHHALSKFNHYKFNIGDLKHIFQMLRRCPEEERVDEQGAYLLNFWYYETQRTFLDRILNPNDIALFERTFDSQL-HQLMRENKVEFEKQI---FTTFLSDSHLRMHRPANSKSNKKKHVHQLLTSIDDLDKCIEAYENAFSNET--GETMDIVWHSFHKEQFIKCHRILSQENRGNLITVTSAPNQMLCIVKLSTFMLSHQFFDVDCT---NKASFIKCLRVAVRIAGCDNRNVSLCIQTSNLKDLDCLGALHSIMLLGEYVPLFSETEIHGLLVALRPKIKRAFSEYVTAPMK---FFTKCVMKNLHVIFLTMP 2053
++M +S L W P+ +L K+ +L++ + +S +F +Q+ L + S + + Q + H+ RL++F+L+W+ G+ L D R + P + FDY+V G W W TR E ++ +G I V V + RT FLI + G +LL G G KT II+ + + + + ++ FS++T Q I + R G YG K + +FIDD+++P + Q +N+++RQL++Q Y L+ ++ L ++P QRL +F +F P+E + + VI + ++G S + + + +L T+ + +T +KF HY FN+ DL ++Q + E V ++ LL W +E +R DR +D+ F++ S + + E K+ + I F FL D+ + + +++ + S L + + + + NE+ G MD+V+ + +K R++ + +GN + V + + +L++F+ + F + T N ++ ++ L+V R AG + ++ + +KD L +++++ GE LF+ EI + L +K+ F + +F V +NLH++ P
Sbjct: 2396 VFMSSSILDWSPILEGFLKKRSPQEAEILRQLYTESFPDLYRFCIQNLEYKMEVLEAFVITQSINMLQGLIPLKEQGGEVSQAHLGRLFVFALLWSAGAALELDGRRRLELWLRSRPTGTLELPPPAGPGDTAFDYYVAPDGTWTHWNTRTQEYLYPSDTTPEYGSILVPNVDNVRTDFLIQTIAKQGKAVLLIGEQGTAKTVIIKGFMSKYDPECHMIKSLNFSSATTPLMFQRTIESYVDKRMGTTYGPPAGKKMTVFIDDVNMPIINEWGDQVTNEIVRQLMEQNGFYNLEKPGEFTSIVDIQFLAAMIHPGG-GRNDIPQRLKRQFSIFNCTLPSEASVDKIFGVIGVGHYCTQRGFS--EEVRDSVTKLVPLTRRLWQMTKIKMLPTPAKF-HYVFNLRDLSRVWQGMLNTTSE--VIKEPNDLLKLWKHECKRVIADRFTVSSDVTWFDKALVSLVEEEFGEEKKLLVDCGIDTYFVDFLRDAPEAAGETSEEADAETPKIYEPIESFSHLKERLNMFLQLY-NESIRGAGMDMVFFADAMVHLVKISRVI-RTPQGNALLVGVGGSGKQSLTRLASFIAGYVSFQITLTRSYNTSNLMEDLKVLYRTAGQQGKGITFIFTDNEIKDESFLEYMNNVLSSGEVSNLFARDEIDEINSDLASVMKKEFPRCLPTNENLHDYFMSRVRQNLHIVLCFSP 3090 The following BLAST results are available for this feature:
BLAST of TCONS_00014573 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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