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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014571 ID=TCONS_00014571|Name=TCONS_00014571|organism=Clytia hemisphaerica|type=transcript|length=1723bpRun BLAST on NCBI transcript from alignment at sc0000190:357093..369156+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014571 ID=TCONS_00014571|Name=TCONS_00014571|organism=Clytia hemisphaerica|type=transcript|length=12064bp|location=Sequence derived from alignment at sc0000190:357093..369156+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00014571 vs. Swiss-Prot (Human)
Match: DYH2 (Dynein heavy chain 2, axonemal OS=Homo sapiens GN=DNAH2 PE=2 SV=3) HSP 1 Score: 158.688 bits (400), Expect = 3.203e-40 Identity = 140/577 (24.26%), Postives = 252/577 (43.67%), Query Frame = 2
Query: 2 IYMDNSALGWRPLANAWLAKQDQTYFHVLQRSFHKSVDRCLQFVQDEARCCVTLSE--GXXXXXXXXXXXXXXRDHQESLAGELHI---ERLYLFSLIWTFGSLLIHDQERHQFXXXXXXXXXXXPDDDREISVFDYFVDES-GEWDSWATRLSEASLDESIDSFGQIFVETVSSHRTKFLISQYMEMGNNILLAGPTGCGKTKIIQDLLKNTESKNRVTLNIAFSNSTDASFLQNFIAGNLHHRQGFVYGAKKKKTLRIFIDDIHLPKHDICDVQSSNQLLRQLVDQQMIYTLQSKHFKPKYIEGMNLLTSLNPTTLDSKSGLQRLLGRFGVFYLPQPNEKEIFSMASVILEANM-SYEQGMSLPQHLHSLIVELSTKIVSAVTMNLQHHALSKF------NHYKFNIGDLKHIFQMLRRCPEEERVDEQGAYLLNFWYYETQRTFSDRILNPNDIALFERT--------FDSQLHQLMRENKVEFEKQIFTTFLSDSHLRMHRPANSKSNKKKHVHQLLTSIDDLDKCIEAYENAFS-NETGETMDIVWHSFHKEQFIKCHRILSQENRGNLITV 1666
+Y D + LGW+P +WL K+ + LQR F K +++ L F +D + V L E G L + + GE ++ E ++FS+IW+ + + ++ R + ++ L + + P+ D +V++YFVD W S+ +L ++ F +I V TV + R +L+S + N ILL GP G GKT I Q +L++ S L + S T ++ +Q+ I + R VY K++ F+DD+++P D+ Q +L+R +D Y + KYI M L+ ++ P RL RF + + P + +I + ++ + +E+ V+ +V+ T+++ + + +F HY FN+ D+ +FQ + R ++ + + + W +E R FSDR+++ D F FD H L + IF FL K+ V++ LT + L +E N ++ + + M +V E + R++ Q RGN++ V
Sbjct: 2225 VYTDYADLGWKPYVQSWLEKRPKAEVEPLQRMFEKLINKMLAFKKDNCKELVPLPEYSGITSLCKLYSALATPENGVNPADGENYVTMVEMTFVFSMIWSVCAS-VDEEGRKRIDSYLREIEGSFPNKD---TVYEYFVDPKIRSWTSFEDKLPKSWRYPPNAPFYKIMVPTVDTVRYNYLVSSLVANQNPILLVGPVGTGKTSIAQSVLQSLPSSQWSVLVVNMSAQTTSNNVQSIIESRVEKRTKGVYVPFGGKSMITFMDDLNMPAKDMFGSQPPLELIRLWIDYGFWYDRTKQTI--KYIREMFLMAAMGPPGGGRTVISPRLRSRFNIINMTFPTKSQIIRIFGTMINQKLQDFEEE-----------VKPIGNVVTEATLDMYNTVVQRFLPTPTKMHYLFNLRDISKVFQGMLRANKD--FHDTKSSITRLWIHECFRVFSDRLVDAADTEAFMGIISDKLGSFFDLTFHHLCPSKR----PPIFGDFL----------------KEPKVYEDLTDLTVLKTVMETALNEYNLSPSVVPMQLVLFREAIEHITRIVRVIGQP-RGNMLLV 2761 The following BLAST results are available for this feature:
BLAST of TCONS_00014571 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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