TCONS_00014569 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014569
Unique NameTCONS_00014569
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length744

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014569 ID=TCONS_00014569|Name=TCONS_00014569|organism=Clytia hemisphaerica|type=transcript|length=744bp
GGCGGTTCCCAAACGCCCATAACAACGCCCGCAGTACAAAATGCTGTGTC
AGCAGAAATTACGAAATTTGAATTAAACACCATTTGTAAATCCGTCTTGA
CCATCGTCAATGCTTCATTATCTGATAGTgATTCGATGTTATTTAAAGAA
ATTGTTCGAGGTGTGTTCGGTGACCATGCTGACTCAGCACTTTTTCCATC
ATACGTTCTCTCTGAAGAAATGTCACTTTTGGAGATTGTTAAAAAGACTA
TCGATGAAAACGGGTTATCTCATCATAAATTGTTCGAAGATAAAATCATG
CAGTTGTATCAAGTATCACAAATCAATCAAGGGATCGTGATATGCGGACA
AAGCAAAACAGGGAAATCAACTTTGGTTCAAACACTCATCCAATCGTTAG
GTATTTTAGCCGAAGAAACGGATAAAGAAAACCACATAACTTATCATCAA
GAACACATTAACGTTCTAGCGGTATCTAGCTTAGAGCAAATGTTTGGTTG
TATAAGCGAGGCGGGTGATTGGGTGAATGGCGTGTTTACAGTGGCGTTGA
AGAAAGCCAATCAAAGTTTGTTGCAGCATAAACAATCAACGTGGATTACA
CTGGATGGACCCTTACATGATGGATGGTGCTCTGCTTTGAATGGTCTCTT
CGAACAGAGAAAGGTATACATGCAACCTGACATGAAGCAACACCATCTGA
ACAAGAATGTGACTTTTGTTTACGAAACACACACGTTAGATCAC
Run BLAST on NCBI

transcript from alignment at sc0000190:351399..356238+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014569 ID=TCONS_00014569|Name=TCONS_00014569|organism=Clytia hemisphaerica|type=transcript|length=4840bp|location=Sequence derived from alignment at sc0000190:351399..356238+ (Clytia hemisphaerica)
GGCGGTTCCCAAACGCCCATAACAACGCCCGCAGTACAAAATGCTGTGTC
AGCAGAAATTACGAAATTTGAATTAAACACCATTTGTAAATCCGTCTTGA
CCATCGTCAATGCTTCATTATCTGATAGTGTAATTATTTCTTTATTAGCT
CTTTGAACAGTCTTCGGGATACATCAATGCCTCAGCTCAGGTTGCCCATG
AAAATAGACAAACTTTGTGACCACAAAAATTATCGATTTTAAGTTTAAAC
TCCTCTtgatttttacaaaagttttaaatttaccTCCATACAGAATTGTA
CCATGGTTTAAAGGGAcaaaaaagtagtaaaatgtaaacattgcgcaaac
cacgtTACAAtcgaaacaatcaaaatcagccatatttgttttgatttttt
gttttgacatgtgatatttgttttgattttgtatcccgctgcatacggtt
tgtttacaaatttcgtcagtacttttatgtccctttaatgaCTTGACTTG
GTGGTGTAACTAGTTATTTTTCTACAAGTCCTCTGAGCGGTTTACCCTGT
ATAAAGAGTGTTTGCAAATATGAGAAGCTGAAAATAAAGTCATTTTAAAG
TTAGTAAGCAACAAACTGCTCTCTTTTCAAATTTGTACCCAAGACCTCGC
ATCATGCCTTTCCATTTGCAAATTCCATTTACAACTGTCTCTCTCTATTT
CGATCTTCAAGGAACCAAGACTTTTCTTCGAATAAAAGAAAGATTTAAAT
CGTTGAGAGCAGGTTACACTACTTTCTACTGAAGGAGACCAATGATTTAG
cacgaattacagaaagattcgaataatagaagttcgaattatggagagaA
GTAAACTGTAATCTAATCCGCCGCTTCCAGGTATTATTTTAAACTTTACT
TAatcatttttaacttttcaggATTCGATGTTATTTAAAGAAATTGTTCG
AGGTGTGTTCGGTGACCATGCTGACTCAGCACTTTTTCCATCATACGTTC
TCTCTGAAGAAATGTCACTTTTGGAGATTGTTAAAAAGACTATCGATGAA
AACGGGTTATCTCATCATAAATTGTTCGAAGATAAAATCATGCAGTTGTA
TCAAGTATCACAAATCAATCAAGGTTTGTAATCACGTAAATCTCGCATCT
TTTTTAGTAGGCAATTATATGGAGGGGTGTCGTCaatattttccccgatt
tccgtcaaaccgtcaaacaaaaacagaaagtCCGCCACCAAAAATTCAAG
AATTCTGTCAAAAATTCCGAAAATTTGGACTATTACTTTCCTTCCGAACA
ATTTTTGTACTAAATGTCGATTTTTGGGACTAATAAAGCCTAGTTTGACG
AGGAACTTGTGAATTTCCGTCAAATTTCGGCTAtctgtttgaaaaaaatg
agcGATTCCGCTCCTCTGCCAACCGAgattttattcatttatttaagAAG
ATCTTAGACAGTTCCCTATATTCTGTAAATTGAGGCTTGACCAGGCTTGA
CTTTTAGGAATATGTGAACCCATCACTGTTTTTAAATAGACTTTTTAATG
TTCAATTGAGGGTGTTCCATTTAAAATATAAGACGAAGACGAACCCTTCC
AAgccaaaaaaattctctaaaatgTGTATGTTTtccccctggaaaatgaa
aaaaaattgcagaaaaaacctttgaaaaattcttcttcGCACCTTTACGT
CAGGGTGGACGAACGAACATCAGTCTTTTAcgctttgcaaaaaaaaaact
cctTCCCTGGGCTGGAAATTCTTCATGGATtaccccaggggggggggcct
GGAAAAGTTTATCCGACCCACTGTATAGATGAAAAGTGGAATGGCCCATT
CTTGTATCGATTTTGATGCATTTCAGGGATCGTGATATGCGGACAAAGCA
AAACAGGGAAATCAACTTTGGTTCAAACACTCATCCAATCGTTAGGTATT
TTAGCCGAAGAAACGGATAAAGAAAACCACATAACTTATCATCAAGAACA
CATTAACGTTCTAGCGGTAAAGTtttcttatgaaattttttgaaccTTTA
CATTCAAGAGTGAATGTAAGAGTTCGCATTGCTGAGCTCTAAAAAGTTAA
ATGTCTTAAAATGAAGGacgattttattttttaagattgatattttttat
ttttgaacataacttttgaaccaatgaagtaaaattagaaagtaatacac
caaattttaagttaggctttcttCTGAATTAttccgaaacaatctttgaa
aactcTTTCTGCTACTACCTGCAATTTAAattcaaagagggtaacttatt
tgtggcacaccgGTAGTTAGAGTGAGAATGGCGATTTCAATACTTGTACT
TTACTTCATTGGATATTTCGATTTAGGAGAGGTTTAATGACTTCTAGACT
ATATTCTCAATCTGTACCGTTTCCTCTGAACCAATCGTTTTTCAGATGGG
GGTAAGAAACGTGTAGTAACATTAAAACATAAAATGTCCTAAATTTATAG
GTATCTAGCTTAGAGCAAATGTTTGGTTGTATAAGCGAGGCGGGTGATTG
GGTGAATGGCGTGTTTACAGTGGCGTTGAAGAAAGCCAATCAAAGTTTGT
TGCAGCATAAACAATCAACGTGGATTACACTGGATGGACCCTTACATGAT
GGATGGTGCTCTGCTTTGAATGGTCTCTTCGAACAGAGAAAGGTATACAT
TGTGCATAGTTCTTTCGTCTCAGACTGATTTCCACTTCAGCAAGATACAA
AAGAAGGCTTTCCCGCCTTCAAACATAACAAAAGCATTCTTTTGACCACT
GGGTATAATATGCGATTTATAAAGGATTCAAATTCAGATTCTCCTGACTG
GTATGTTTTACACTGGTAAATTCGACAAGTCGTCTATCTTCTGCATTTTT
AACAGTCTTTCAATTAATATATCTTACAACTGTGAGCGATTGAGTTAAAC
TATCATTTATCTTCATAGGTTTACATGCAACCTGACATGAAGCAACACCA
TCTGAACAAGAATGTGACTTTTGTTTACGAAACACACACGTTAGATCACA
TATCTCCAATTGTCTTTGCAAATATGGTACGAGTTAATCGATTCATTCTT
TGCTTGTTCATTTANCGGGACTAATAAAGCCTAGTTTGACGAGGAACTTG
TGAATTTCCGTCAAATTTCGGCTAtctgtttgaaaaaaatgagcGATTCC
GCTCCTCTGCCAACCGAgattttattcatttatttaagAAGATCTTAGAC
AGTTCCCTATATTCTGTAAATTGAGGCTTGACCAGGCTTGACTTTTAGGA
ATATGTGAACCCATCACTGTTTTTAAATAGACTTTTTAATGTTCAATTGA
GGGTGTTCCATTTAAAATATAAGACGAAGACGAACCCTTCCAAgccaaaa
aaattctctaaaatgTGTATGTTTtccccctggaaaatgaaaaaaaattg
cagaaaaaacctttgaaaaattcttcttcGCACCTTTACGTCAGGGTGGA
CGAACGAACATCAGTCTTTTAcgctttgcaaaaaaaaaactcctTCCCTG
GGCTGGAAATTCTTCATGGATtaccccaggggggggggcctGGAAAAGTT
TATCCGACCCACTGTATAGATGAAAAGTGGAATGGCCCATTCTTGTATCG
ATTTTGATGCATTTCAGGGATCGTGATATGCGGACAAAGCAAAACAGGGA
AATCAACTTTGGTTCAAACACTCATCCAATCGTTAGGTATTTTAGCCGAA
GAAACGGATAAAGAAAACCACATAACTTATCATCAAGAACACATTAACGT
TCTAGCGGTAAAGTtttcttatgaaattttttgaaccTTTACATTCAAGA
GTGAATGTAAGAGTTCGCATTGCTGAGCTCTAAAAAGTTAAATGTCTTAA
AATGAAGGacgattttattttttaagattgatattttttatttttgaaca
taacttttgaaccaatgaagtaaaattagaaagtaatacaccaaatttta
agttaggctttcttCTGAATTAttccgaaacaatctttgaaaactcTTTC
TGCTACTACCTGCAATTTAAattcaaagagggtaacttatttgtggcaca
ccgGTAGTTAGAGTGAGAATGGCGATTTCAATACTTGTACTTTACTTCAT
TGGATATTTCGATTTAGGAGAGGTTTAATGACTTCTAGACTATATTCTCA
ATCTGTACCGTTTCCTCTGAACCAATCGTTTTTCAGATGGGGGTAAGAAA
CGTGTAGTAACATTAAAACATAAAATGTCCTAAATTTATAGGTATCTAGC
TTAGAGCAAATGTTTGGTTGTATAAGCGAGGCGGGTGATTGGGTGAATGG
CGTGTTTACAGTGGCGTTGAAGAAAGCCAATCAAAGTTTGTTGCAGCATA
AACAATCAACGTGGATTACACTGGATGGACCCTTACATGATGGATGGTGC
TCTGCTTTGAATGGTCTCTTCGAACAGAGAAAGGTATACATTGTGCATAG
TTCTTTCGTCTCAGACTGATTTCCACTTCAGCAAGATACAAAAGAAGGCT
TTCCCGCCTTCAAACATAACAAAAGCATTCTTTTGACCACTGGGTATAAT
ATGCGATTTATAAAGGATTCAAATTCAGATTCTCCTGACTGGTATGTTTT
ACACTGGTAAATTCGACAAGTCGTCTATCTTCTGCATTTTTAACAGTCTT
TCAATTAATATATCTTACAACTGTGAGCGATTGAGTTAAACTATCATTTA
TCTTCATAGGTTTACATGCAACCTGACATGAAGCAACACCATCTGAACAA
GAATGTGACTTTTGTTTACGAAACACACACGTTAGATCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008155XLOC_008155Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014569-exon-sc0000190-1491911889:351399..351527TCONS_00014569-exon-sc0000190-1491911889:351399..351527Clytia hemisphaericaexon
TCONS_00014569-exon-sc0000190-1510915933:351399..351527TCONS_00014569-exon-sc0000190-1510915933:351399..351527Clytia hemisphaericaexon
TCONS_00014569-exon-sc0000190-1575043694:351399..351527TCONS_00014569-exon-sc0000190-1575043694:351399..351527Clytia hemisphaericaexon
TCONS_00014569-exon-sc0000190-1491911889:352320..352521TCONS_00014569-exon-sc0000190-1491911889:352320..352521Clytia hemisphaericaexon
TCONS_00014569-exon-sc0000190-1510915933:352320..352521TCONS_00014569-exon-sc0000190-1510915933:352320..352521Clytia hemisphaericaexon
TCONS_00014569-exon-sc0000190-1575043694:352320..352521TCONS_00014569-exon-sc0000190-1575043694:352320..352521Clytia hemisphaericaexon
TCONS_00014569-exon-sc0000190-1491911889:355066..355205TCONS_00014569-exon-sc0000190-1491911889:355066..355205Clytia hemisphaericaexon
TCONS_00014569-exon-sc0000190-1510915933:355066..355205TCONS_00014569-exon-sc0000190-1510915933:355066..355205Clytia hemisphaericaexon
TCONS_00014569-exon-sc0000190-1575043694:355066..355205TCONS_00014569-exon-sc0000190-1575043694:355066..355205Clytia hemisphaericaexon
TCONS_00014569-exon-sc0000190-1491911889:355690..355887TCONS_00014569-exon-sc0000190-1491911889:355690..355887Clytia hemisphaericaexon
TCONS_00014569-exon-sc0000190-1510915933:355690..355887TCONS_00014569-exon-sc0000190-1510915933:355690..355887Clytia hemisphaericaexon
TCONS_00014569-exon-sc0000190-1575043694:355690..355887TCONS_00014569-exon-sc0000190-1575043694:355690..355887Clytia hemisphaericaexon
TCONS_00014569-exon-sc0000190-1491911889:356164..356238TCONS_00014569-exon-sc0000190-1491911889:356164..356238Clytia hemisphaericaexon
TCONS_00014569-exon-sc0000190-1510915933:356164..356238TCONS_00014569-exon-sc0000190-1510915933:356164..356238Clytia hemisphaericaexon
TCONS_00014569-exon-sc0000190-1575043694:356164..356238TCONS_00014569-exon-sc0000190-1575043694:356164..356238Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000190supercontigsc0000190:351399..356238 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.921078	1.08247	2.02307	0.926382	9.65691	4.77525	3.92694	3.69613	2.07025	1.79573	2.55777	2.79731	0	0.304987	0.235088	0.228047	0.437958	0.257513	1.10992	0.910474	0.714072	0.368372	0	0.643709	9.67448	9.02569	1.52753	0.178923	0.209492	0
Blast
[Close]
BLAST of TCONS_00014569 vs. Swiss-Prot (Human)
Match: DYH5 (Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 3.037e-18
Identity = 57/226 (25.22%), Postives = 111/226 (49.12%), Query Frame = 1 
Query:   76 NTICKSVLTIVNAS-LSDSDSMLFKEIVRGVFGD-HADSALFPSYVLSEEMSLLEIVKKTIDENGLSHHKLFEDKIMQLYQVSQINQGIVICGQSKTGKSTLVQTLIQSLGILAEETDKENHITYHQEHINVLAVSSLEQMFGCISEA-GDWVNGVFTVALKKANQSLLQHKQSTWITLDGPLHDGWCSALNGLFEQRKVYMQPDMKQHHLNKNVTFVYETHTLDH 744
            +TI   VL  +N S L D D  LF  ++  +F +   D A +P         L   + + ++E GL +H  ++ K++QL++  ++  G++  G S  GK+T + TL++++    +         + +  +N  A+++  QMFG +  A  DW +G+F+   +K  ++  +  +  WI LDGP+   W   LN + +  K     +  +  +  N   ++E H +D+
Sbjct: 2178 STIVMRVLRDMNLSKLIDEDEPLFLSLIEDLFPNILLDKAGYPE--------LEAAISRQVEEAGLINHPPWKLKVIQLFETQRVRHGMMTLGPSGAGKTTCIHTLMRAMTDCGK--------PHREMRMNPKAITA-PQMFGRLDVATNDWTDGIFSTLWRKTLRA--KKGEHIWIILDGPVDAIWIENLNSVLDDNKTLTLANGDRIPMAPNCKIIFEPHNIDN 2384
The following BLAST results are available for this feature:
BLAST of TCONS_00014569 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DYH53.037e-1825.22Dynein heavy chain 5, axonemal OS=Homo sapiens GN=... [more]
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