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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014560 ID=TCONS_00014560|Name=TCONS_00014560|organism=Clytia hemisphaerica|type=transcript|length=3304bpRun BLAST on NCBI transcript from alignment at sc0000190:318964..444156+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014560 ID=TCONS_00014560|Name=TCONS_00014560|organism=Clytia hemisphaerica|type=transcript|length=125193bp|location=Sequence derived from alignment at sc0000190:318964..444156+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00014560 vs. Swiss-Prot (Human)
Match: DYH8 (Dynein heavy chain 8, axonemal OS=Homo sapiens GN=DNAH8 PE=1 SV=2) HSP 1 Score: 228.794 bits (582), Expect = 8.721e-61 Identity = 147/470 (31.28%), Postives = 259/470 (55.11%), Query Frame = 1
Query: 40 FEQELDKQVKEFVVAVIRFRNSFDSQGPGVPGILPKEAALRLKNFQEQYNSFQSNMKTLHAVQKLYGIMPTPFTELEKTGTELEMLGMLYDIYKVFLKFDLEFRESLWADINLEEKHTQLNILHDNCMGVPTEIHGWYAFKKLIESINDYINLFPILYKLASKEIRNRHWLQVMHVTKKSFQLEANXXXXXXXXXXXXXXHRDAIEEILCGSKAELELEMKLRHIEEEWTEQILKFQSFKSRGLVLFDQDHMNHLLDTLGDAKTTLSAMLTSKYVKPLREEAATWSLKXXXXXXXXXXXXXXXXXXXXXXAIFSIENMVKELPEQSTSFVKADRSYMKLMKKSSETANVLQCCLGGDVSKVLTIKQIYRELETCFKSLKGYLNEKRKVFPRFHFVPDEVLLCMLSKRLSIETVTPYIRDVILAVN----------RFDTITTNQNHRASIDTSRASSGSPQSLKTNLMDM 1419
F+ L + V+ F VI F +++ +GP VP I P+EA+ RL+ FQ ++ T + ++L+G+ T + L KT EL +L LY +Y + + E LW D+++E+ + +L + C +P + W AF L + I+D+ P+L + +K ++ RHW ++ +T F +E++ F L+ I++ LLKH+D IE+I + E ++E KL + E WT Q L F +FK +G +L ++ + D+ L ++L+++Y P ++ W KL S+++EEWL+V+ LW+ LEA+F ++ K+LP+++ F D+S++K+M+++ E NV+ CC+G + L + ++ +LE C KSL GYL +KR +FPRF FV D VLL +L + T+ P++ V +N R + + + + +D S + G + +L+ M
Sbjct: 1193 FKSNLLESVEVFREDVINFAEAYELEGPMVPNIPPQEASNRLQIFQASFDDLWRKFVTYSSGEQLFGLPVTDYEVLHKTRKELNLLQKLYGLYDTVMSSISGYYEILWGDVDIEKINAELLEFQNRCRKLPKGLKDWQAFLDLKKRIDDFSESCPLLEMMTNKAMKQRHWDRISELTGTPFDVESDSFCLRNIMEAPLLKHKDDIEDICISAIKEKDIEAKLTQVIENWTNQNLSFAAFKGKGELLLKGTESGEIITLMEDSLMVLGSLLSNRYNAPFKKNIQNWVYKLSTSSDIIEEWLVVQNLWVYLEAVFVGGDIAKQLPQEAKRFQNIDKSWIKIMQRAHENPNVINCCVGDETMGQL-LPHLHEQLEVCQKSLTGYLEKKRLLFPRFFFVSDPVLLEILGQASDSHTIQPHLPAVSDNINEVTFHAKDYDRIMAVISREGEKIVLDNSVMAKGPVEIWLLDLLKM 1661 HSP 2 Score: 135.961 bits (341), Expect = 6.906e-32 Identity = 99/451 (21.95%), Postives = 199/451 (44.12%), Query Frame = 1
Query: 1579 VTAVVDSQGEKMYLDNHILLEGYVETWMSKILSEIKNSVKQLLSTSIQKL-DNGVPFEEVLLNTPAQIGVISFYYYFTKETERAVLFLRSDRKSLTNLAKKFSGLSNRLSYMLSHGVYRPMNVNLSRTQKIRVENVLGLCFFAVTTIDKLIAVKMRDTNDFEWRQTVKCYAGDAQYLQTTRNNSPQPPRSHTPTRKNMSPPRSQTPRIETIDERGVQPVHIKLLDFSFTYQNEFHGCQLGSVVWVTSDKAFLNLMTSLTNGKAGCVSCDQPTGRSGIIDCLKILCGQHCFTLDCASPLSYQSIGHLFLGIIEDGSWCTFSNFDQLSSAKMNLVQ---YFLFTIHQFLKQPGFNKLVSSKGTNHVDGFRVTSVHPNCGVFLTTTTSYI-HQQCPPSIKLHLRNISIAKPDLQRLLKIQLIARSFKSYKIITN-YLVLLKDC---VKNQLHRD 2904
+ AV+ +GEK+ LDN ++ +G VE W+ +L +S+ ++ ++ ++ D+G L + PAQ+G++ +T ++E A+ + DRK + +KF + N L +H +LS+ +++ E ++ + D L+ + ++ DFEW + + Y E +D+ V + D F YQNEF GC V+ +D+ ++ L +L G + TG++ + G++ +C+ + ++ +G +F G+ + GSW F F+++ +++ Y + T + K+ + + S G ++P G+FLT Y Q+ P ++K+ R +++ PD Q +++++L + F I+ + VL K C + Q+H D
Sbjct: 1628 IMAVISREGEKIVLDNSVMAKGPVEIWLLDLLKMQMSSLHNIIRSAFYQISDSGFQLLPFLSHFPAQVGLLGIQMLWTHDSEEALRNAKDDRKIMQVTNQKFLDILNTLISQTTH--------DLSKFDRVKFETLITIHVHQRDIFDDLVKMHIKSPTDFEWLKQSRFYFK------------------------------------EDLDQTVVS-----ITDVDFIYQNEFLGCTDRLVITPLTDRCYITLAQALGMNMGGAPAGPAGTGKTETTKDMGRCLGKYVVVFNCSDQMDFRGLGRIFKGLAQSGSWGCFDEFNRIELPVLSVAAQQIYIVLTARKERKK----QFIFSDGD-------CVDLNPEFGIFLTMNPGYAGRQELPENLKIQFRTVAMMVPDRQIIMRVKLASCGFLENVILAQKFYVLYKLCEEQLTKQVHYD 2018 The following BLAST results are available for this feature:
BLAST of TCONS_00014560 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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