TCONS_00014547 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00014547
Unique Name	TCONS_00014547
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1594

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000190:95496..102264+

transcript sequence

>TCONS_00014547 ID=TCONS_00014547|Name=TCONS_00014547|organism=Clytia hemisphaerica|type=transcript|length=1594bp
tatAGAATCGCCCAACAACAAAAGTAAAGATGGCGATGAAGAAAAGCCAA
TCTGTTCCATGGATTTGCAAATCATTTGTCATTTTTTCTACTTACCTTAC
GAAAATGGTGCTATCGCAGAAGCTTTCGTTAAAGGGTTTGAATGGCTTAA
AGACAATATGATCCAATTTGATGAACAACCATCAGATGAAGaggtAGAAG
AATGGAAAACAAAGTccacaaactttcaaaaacGATGTGAAGAACTTTGT
AAAGTCTTTGATCGCATTTCAAATATTCCAAATCAACGTGTAGCGGGAGA
GTTGGAACAATACATATCCGCCGCGCGTGACGCTATCAATATGCTCAAAT
CGTATGTCAAATATCttgGATCCAAAGAACGAGAAGAGACAGGCAGTTTA
ATTCCACCTGATCCTGAAGCATGGTTCTTTAGAGGTGGTGTCATTGGTCA
AATGGAGcGTTTGGTGCCAACATGCAATGATTTTAAATCAAcgatttcaa
ccaatcagattcaagTAATTCGTCCGTACACGAAAGATGATTTGGAGATA
TACAAACTGTGCAACAAGAACCTTCTACCGGTCGAAGATTACCTCGCCGA
TAAAGAAAAACACCAGGATGCGTTTGACAGATCATTAGGAGCGTTTGCCG
ACTTCGAGCAATGTACTGCCTCTTTTGTCTTGGAAATCGACGATGAAATT
TGTGGCGTAATTTTCGGGCATTCGGAAGCCAAAACATTTTACACTCATCA
ATCCAAGCATTGGTTACCCAAGATGATGTCAAAGTATAGTAAACGTGAAG
ATAACCCTTTCTCAAAACATCCATGTAAAGTTGATGAGAAGACGTTGGAA
AGATATCCTGGAGTGGTTTgcataaaaattgattttgttctTATGGGAAC
GCCAATCGTAAACAAACTGCTGAATTGtgttttaaacgttttaaaaatGA
ACATACAttttgttatggaaaatatttcacgtaaagaaaaagaacaattt
aaagAGCTCGGGTTTACGACGAAAGATATAAAGCATAAAAACTCAACTAT
ATTTCTTTATCAACGTTAAAAAGATCAATGAAGAGGACACGAAGGATCTT
GTAGGNccccccccccccccgttcacttggaacctaagagtacgtacttt
ttgattTCTGTTTTGAAGGATGGAACGAATTTCGAGTACTGTTCCCACTG
TTCCTGGGCACATGTACTCAAAATGCGTTATAAAGATTGTTTTTTGTGTC
TTGTCGATCCTGGACGTATTATAACGAAGAGCTTTAATAGTACTGttgaa
taacttgaaaaataaaactttcagAGGAGTTTCTTTATATTAATGTCACT
TTGACCTCATTcttacaatacaccttttcgaccgtagccgccagtTGCGC
GGCCATTTTTTTGTCcgatttaccaccctaaaaccgacccagtctttttt
tcgcacctaccttattggtattaaatttctcggtacttaatttcgcgatt
tttgaggtcaaatttcgcgaaatttaataccgtttaaatttttcaaaata
caaaatcgcgaaattaaatacacgcaaaatattttcaaaatagg

Run BLAST on NCBI

transcript from alignment at sc0000190:95496..102264+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00014547 ID=TCONS_00014547|Name=TCONS_00014547|organism=Clytia hemisphaerica|type=transcript|length=6769bp|location=Sequence derived from alignment at sc0000190:95496..102264+ (Clytia hemisphaerica)
tatAGAATCGCCCAACAACAAAAGTAAAGATGGCGATGAAGAAAAGCCAA
TCTGTTCCATGGATTTGCAAATCATTTGTCATTTTTTCTACTTACCTTAC
GAAAATGGTGCTATCGCAGAAGCTTTCGTTAAAGGGTTTGAATGGCTTAA
AGACAATATGATCCAATTTGATGAACAACCATCAGATGAAGaggtttttc
ttcattttatatCATAGACTGAATTcgtttaccttaagggaactaatttt
tgcgttttttggtTTCTACCGCAAAAACTAGTCCCGCGTAATGCCCCAAT
TTAGTACCCTCGCAACGCGAAAGTCATTTCCGCTAAAAATAGTTTCCTTT
AAGGGTATATCACGCTACGTATTAGACAGTAATGGAGCTGTTATGTAATA
ATACGATAACTCTTACGGGTTTAATCACTTTGTATGGCTACCATCATACT
TCTAATTTAATGCGGCCAATTCTAATCGTTATGGAGATGCCGCACTAATA
ATAGAAGGAAATCGTCTCTCTAACATATAAAAAATTAGAGGTAGTTTGGA
GAATACATAATAATGAAGGCTAATTGgttatattcaatttttgattttgg
gaCAAAGAGGAGGAGTGGCAACTCTAATTGTCCGAGAAGAAGCAGCCCTA
GATAcagatgataattttttttatttgtgatTTTATATCTTGATTTGATA
TATTGTGAAGAAAACAGATCCTTATGCGGAACCTCCGCTCTAGTTTTAAT
AGTTCGCACTATTAAAGTGAGAAAAAAATCGACCCCTGCCGTATTGAATT
AGATGAGGATGAGAAACAGGTGAAGAAGTAGCCGGAAAAACCAAACAAGA
CAAACCAGAAGTTGTCAAAATAATTAATCCGCCTTAATTTTGAAAGACGc
attaaattagagaaatgaCGGTATTATAATGGTGtccttcaatttttctt
tccgTAACCTACGCTTTTATAATTTAGTCCTCTTGCATGTCACACTAATA
ATATTGAAGCAAGGCAAGCAAGacattgtaaaaataaaaagcaaCCCCTA
TAGACAGTTCCTAAACGCTCATGGTGCCACTTCAAGCAGAGAGTTTCTCT
TTCTTCTCCTGTTTTTGGAGCTCGTGACAACCAGGGTGTGATCCTTCTCA
ATCGTCTTCGAGTAGGATTTAGTCACCtcaatgaacataaatttaGACAC
GGTTTTCGTGACACCTTAGAACCTTTTTGTCCGTGTAGAAcaaattccat
cgaaaactcTCAACACTTCCTTTTGCACTGCTCTATTTACTCTCAGGCAA
GACATCTTTTGTTCAACAAACTTCTGAACCAAAACATAAATATTTATCCA
CTAAGCCCTCCTAAGCTCTTGAACCTTTTGTTGCACGGTGATCCAGAATT
ACCTTTCAACATAAATAACATAATAATTAATCttgtcattgaattcattc
tcgactctgaaaggtttagtggtgccttattttagtttaatgatcttctt
acacagctctataatattttttaatatttctgtttatccttttagtgatg
gttttccctttaagttttttattttattcaatagCTTAGTACCCTTGGCG
ATATCACTTATTGCCTTGCGGGGGGAtgagctatttattttttctgtgtt
tgtttttgtaagtaGTATATGTTCGTAAGTATAATGTAGCTTCTcaaatc
atataaaaaaaaagcaaaaaaaaagcagAGAGTTGTATTCTTTTCTCTAT
GCTGTTCGATCCAGTACTTAGATTTATCCTGAAAACAGAAATattgtttt
aacatttttaggtAGAAGAATGGAAAACAAAGTccacaaactttcaaaaa
cGATGTGAAGAACTTTGTAAAGTCTTTGATCGCATTTCAAATATTCCAAA
TCAACGTGTAGCGGGAGAGTTGGAACAATACATATCCGCCGCGCGTGACG
CTATCAATATGCTCAAATCGTATGTCAAATATCttggtaaaagatttctt
tgtcATTCTTGTTTGCCgattctttctttcaaaatactttaaaaaatgaa
agtggGGTATAGAATATCAAAATGGCGAATagtgtaaaaaaactttcggg
GGGTGGGGGTCACTCAGACAAAATTTGGGATGATGTGTCACTGATTAGAA
TCCCTTCttgtagttttgaaaatttctggcagagtcaaaaatttattaaa
tttgggaATTGTATTTGACAGGGTAAACTTTTCAGGgtggtttttttgaa
aaagatcaaattgaGCAACAGATAAGCTCCGTTCGTTCGGATAGCTTCCC
ATTACAAGAatagttttttggacctaccccggcgGAGGTCCTGTAAATTa
gccgttgtccgttcgtccgttcgttatgaggttttctcgagattgactcg
tttattttttctgactttttgcacaaggaagcaaaatggcaatgccaaGA
ATGTGACGCAGTCCGATTttcgggagaaaaaaaatttggggtcaATTTTA
GCCAAAAAACGGCTGAAAAAAGTGTTCTTTGaacttttatgaaatatttt
atcattaattttttctgattttttgcatgaaagtaaggtagcatcatagg
taaaagatggctcaagcagatttttgcaaaaaagttctttcggctcaaaa
aacgcatctttatctataagaatcactttttataagcatacatcgatgtt
cttagccaaattactcaatttttgacaatGTGCACAGGGGACAATCAACT
GCTCTATAACTCTAACTGATCCTGGAAACTCGGTAAATACAAATAAAGAT
CATCTAAAGTTTCAGAGAGACAAAAGGAGCTTTAAAATTTTACAGAAACC
TTTCATTGTTGTTTGAATCCTAAAGTTAAGGACATACAGTAGTGAAACTC
AGATCTGAATTATGTAAAGTCTCGAgcctccttaactcgaatgtctcctt
aactccgACAAGTTTTCTTttccctttagttaacaataccttataaacct
ttACTCCTTAACTCGATAttttcgaacaaatttgtgttccccgtagGGGT
TCGAGTTATGCAGACTGGACTGAATTAGTAAAGATAGTTTatagttttgt
atttttgtcaaattttcaaaatagatctCTTTGCTTCTCCATAGGATCCA
AAGAACGAGAAGAGACAGGCAGTTTAATTCCACCTGATCCTGAAGCATGG
TTCTTTAGAGGTGGTGTCATTGGTCAAATGGAGGTTAGGCCCCTTGATTA
CATTCATGTTGTTGTTATGGAGTTTAGAGTTTTTTTGTTGAGATTGTGTT
GCGTTTACGTGTTCGTAGTTCGTAGGGGTCGGTCTCCGTTGTTTAAGTCA
ATACTTTAAAATTCGTTTAATGTAATTGATTTAGGCTAAGCCCGATTGGG
GTACTTGGGGTACTAAGAATCTGGTAACcccttttttcaacattttcgaa
CTCAAGGTAAGATTGCAAATTCGCCGGAGTGACTGAAAAATTCCTTTTCG
GGGtcactttttctcaaattttaccttaaggttttattttttgaaccttA
TTTTGCCGACCTGAGAAGATAACATCTATTCATCCCGGTCATATCTCCCG
ATCATCttccatgaaaaatatttctttttagcGTTTGGTGCCAACATGCA
ATGATTTTAAATCAAcgatttcaaccaatcagattcaagTAATTCGTCCG
TACACGAAAGATGATTTGGTACGTTGTAACTTTCAAATTCATTTCTAATC
TTTAGTTTCTTCAAATAACTGAAAACCCTCACATTCCCTGGATTGAACCA
AATCAATCTTCTTCAACTGAGCGccaaaaaattaatgataatagccgcat
tctttttcaccgttcaataTGTTACGTTTCTTACTATGGtttcttaaaaa
atcttttattaattcacttaattatttaaagaaTAATGCAACTTTTCCAG
GAGGAGATATACAAACTGTGCAACAAGAACCTTCTACCGGTCGAAGATTA
CCTCGCCGATAAAGAAAAACACCAGGATGCGTTTGACAGGTGAGCTGGAA
ATCATACAAGCCTtgacctttaaaaagcttaaactAAGTGGtataattcg
aattagatagtggttttatgctcgttaaaaagataattcgGAGTAGaata
ttattaaaaaagaaaaacattagaaatggaaaaacgaagatgaaatatga
agaagaagaaaatcaacataTTGCATgctatattgagacagactttattt
GTCAATAGAGGAATAACACCTCTATGGTGTTCCAGGTTTTATTACCTGTT
TATAGACGCTAACTTTTTCTTACAGATCATTAGGAGCGTTTGCCGACTTC
GAGCAATGTACTGCCTCTTTTGTCTTGGAAATCGACGATGAAATTTGTGG
CGTAATTTTCGGGCATTCGGAAGCCAAAACATTTTACACTCATCAATCCA
AGCATTGGTTACCCAAGGTATTTATTTTTAGTTCATTAAATAATTTACTT
GTTCAATTAGACATATATATTAGAATTGAAAAAACCAACGGTATTTACGG
GTGCTTACAAGAGTGCTTGGTTCCGGAGACATGTGGAGAGAGACGGAGTT
TAATGCAATTTCAGATTTTTACGCTACAGTGAGTGCGGTTTTAGCGACCG
ACTGCCCTCTTACAAAGTAGCTTTTTTAATAGCTTAGATAAACTTTTGAA
CATAAGCctatttttctgaaatattcttaaggcTACTAGGCCTTAacttt
gttaaaaatattttcttttgcaattttcttaacttgttctctaGATGATG
TCAAAGTATAGTAAACGTGAAGATAACCCTTTCTCAAAACATCCATGTAA
AGTTGATGAGAAGACGTTGGAAAGATATCCTGGAGTGGTTTgcataaaaa
ttgattttgttctTATGGTATgcttattacacgttttttttttcttagaa
gAATGAAGATCATGTATTAAGTTggctaaaactaaaaaaattaagaaaat
taagaacaattccaCCCTTAGATTTCCCGATTGGTTATAGTCACTAAGTG
AATTTGGAAGCATGGTGAGGACTTAGCgatatattcaaaaaattaaatct
cTGGGCGATTAAAATCCCCAACTCCTACAAATTTTAGGGTCGTTACCTTT
GCAATTATAGGAAAATTTCCAGATTTAGTTTAGTAATTTCCACCATCATG
AAAGGGAACGTTCGATTTTCAAAAGACGATCCCTTTCAATTCCTTTGCAA
ATCGAATAGAATATCAAAAAAGCCTGTGAGTCGCGAAATTTAGCAAGGTA
ACCCCAAACAAACTTGAATCATCTTATACTGCTACCACATGATTCGGAAT
GAGGATATCTGTCTCccccattgacttccaagcccgaagggctagactcg
agactcttggatgggaaatggaaccacttatttcccatccagatcGCCCG
CATGTGGTTTTTACAAACTCCGGATTGAACCTAAAATCTATagctagatt
tcaaaataatGCAGCTCTCGAAAACAAAGGATCGCAAAATACGattcgtc
gtcatgattacggtgagttctaggcgcgttctggatgggaacgtatggct
tcactttttattgcctgggaaaggttggagattctactctagcccttcga
gctttaaactcaatggtctcCCCTTGTTTTAATTACCCGTTGAAATTTTC
AGTGTATTGGATGACAAATAAGTCGaatctccataacttgaacacgcacg
ggaaacacaaatttgttcgaattaatgATATACAACGTTGGAGAGTCTTC
Caaaatttccacccaatacgtcactttttctattgtttaagtgacgtatt
gggtggaaaaagttctcagaagactctccagtggtgcatatcatgaataa
aggaaatttcgagttatggagtaaggtttataaggcattgttaactaaag
ggacGACAAAACtacttgttcgaattaaggagacattcgagctaTAGAAT
TAAAGAAACTCTACTGTATGATAGGCTTGAGTGGCCAAGTAATAAATCAA
TTAACGCCTTCTTGTTTCAGGGAACGCCAATCGTAAACAAACTGCTGAAT
TGtgttttaaacgttttaaaaatGAACATACAttttgttatggaaaatat
ttcacgtaaagaaaaagaacaatttaaagAGCTCGGGTTTACGACGAAAG
ATATAAAGCATAAAAACTCAACTATATTTCTTTATCAACGTTAAAAAGAT
CAATGAAGAGGACACGAAGGATCTTGTAGGNccccccccccccccgttca
cttggaacctaagagtacgtactttttgattTCTGTTTTGAAGGATGGAA
CGAATTTCGAGTACTGTTCCCACTGTTCCTGGGCACATGTACTCAAAATG
CGTTATAAAGATTGTTTTTTGTGTCTTGTCGATCCTGGACGTATTATAAC
GAAGAGCTTTAATAGTACTGttgaataacttgaaaaataaaactttcagA
GGAGTTTCTTTATATTAATGTCACTTTGACCTCATTcttacaatacacct
tttcgaccgtagccgccagtTGCGCGGCCATTTTTTTGTCcgatttacca
ccctaaaaccgacccagtctttttttcgcacctaccttattggtattaaa
tttctcggtacttaatttcgcgatttttgaggtcaaatttcgcgaaattt
aataccgtttaaatttttcaaaatacaaaatcgcgaaattaaatacacgc
aaaatattttcaaaatagg

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_008150	XLOC_008150	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000190	supercontig	sc0000190:95496..102264 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.341143	1.50647	0.0891009	0.23631	1.22538	0.210319	0.47792	1.31094	1.54894	1.5391	1.30636	1.19053	1.49228	2.256	0.964581	2.11043	1.72902	1.60661	0.452691	1.49248	0.437819	0.442043	2.13327	1.49774	1.88477	1.4566	0.110961	0.3364	0.23773	0.615313

Blast

[Close]

BLAST of TCONS_00014547 vs. Swiss-Prot (Human)
Match: OGA (Protein O-GlcNAcase OS=Homo sapiens GN=MGEA5 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 6.677e-32
Identity = 85/282 (30.14%), Postives = 140/282 (49.65%), Query Frame = 2

Query:    2 IESPNNKSKDGDEEKPICSMDLQIICHFFYLPYENGAIAEAFVKGFEWLKDN--MIQFDEQPSD-EEVEEWKTKSTNFQKRCEELCKVFDRISNIPNQRVAGELEQYISAARDAINMLKSYVKYLGSKEREETGSLIPPDPEAWFFRGGVIGQMERLVPT--CNDF----KSTISTNQIQVIRPY-TKDDLEIYKLCNKNL-----LPVE---DYLADKEKHQDAFDRSLGAFADFEQCTASFVLEIDDEICGVIFGHSEAKTFYTHQSKHWLPKMMSKYSK 793
            +  PN K     E  P+   DLQ++   FYLPYE+G      ++ F+WL+ N  ++  + +  D E++EEW++++  F++ C  +  +F R+SN  N+ +  ++  Y+   +  ++M+KS+V++LG +       LI  D E W FRGG+ G+ +RL+P    ND          T+++  IRPY  KD+  +YK+C +       LP +   D + DK                 + C   FVLE +D ICG   G  +   F       W+P M  KY+K
Sbjct:  539 VPGPNEKPLYTAE--PVTLEDLQLLADLFYLPYEHGPKGAQMLREFQWLRANSSVVSVNCKGKDSEKIEEWRSRAAKFEEMCGLVMGMFTRLSNCANRTILYDMYSYVWDIKSIMSMVKSFVQWLGCRSHSSAQFLI-GDQEPWAFRGGLAGEFQRLLPIDGANDLFFQPPPLTPTSKVYTIRPYFPKDEASVYKICREMYDDGVGLPFQSQPDLIGDKLVGGLLSLSL-------DYC---FVLEDEDGICGYALGTVDVTPFIKKCKISWIPFMQEKYTK 807

The following BLAST results are available for this feature:

BLAST of TCONS_00014547 vs. Swiss-Prot (Human)

BLAST of TCONS_00014547 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
OGA	6.677e-32	30.14	Protein O-GlcNAcase OS=Homo sapiens GN=MGEA5 PE=1 ...	[more]

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TCONS_00014547 (transcript) - C. hemisphaerica