|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014546 ID=TCONS_00014546|Name=TCONS_00014546|organism=Clytia hemisphaerica|type=transcript|length=2643bpRun BLAST on NCBI transcript from alignment at sc0000190:87850..102264+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014546 ID=TCONS_00014546|Name=TCONS_00014546|organism=Clytia hemisphaerica|type=transcript|length=14415bp|location=Sequence derived from alignment at sc0000190:87850..102264+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00014546 vs. Swiss-Prot (Human)
Match: OGA (Protein O-GlcNAcase OS=Homo sapiens GN=MGEA5 PE=1 SV=2) HSP 1 Score: 327.02 bits (837), Expect = 8.874e-97 Identity = 150/283 (53.00%), Postives = 202/283 (71.38%), Query Frame = 3
Query: 48 FYSGVIEGFYGSPWSNEARKHLMEWLKSLNMNTYMYAPKDSSKHRKNWREPYGQAELDSLKTLIQAAKTNSINFVYAISPGLDVVFTSDTDVQSLKQKLEQVYKLGCRSFAILFDDIEPELCLVDKMEFASSAEAQAFLTNKVFEWFSDLQLILFCPTEYCTT--RADMKESEYLKTIGSKLHKEVQIFWTGPKVVPQEINSESLEYLTKLLQRKPVIWDNIHANDYDERRVFLGPYKGRPLDLYQNTNGILTNPNCEFEANFVAFESLALWYKQAEMNSTKE 890
F GV+EGFYG PW E RK L L+ +NTY+YAPKD KHR WRE Y E + L TLI AA+ I F+YAISPGLD+ F++ +V +LK+KL+QV + GCRSFA+LFDDI+ +C DK F+S A AQ +TN+++++ + + LFCPTEYC T ++ +S YL+T+G KL +++ WTGPKVV +EI ES+E ++K+++R PVIWDNIHANDYD++R+FLGPYKGR +L G+LTNPNCEFEAN+VA +LA WYK + MN ++
Sbjct: 60 FLCGVVEGFYGRPWVMEQRKELFRRLQKWELNTYLYAPKDDYKHRMFWREMYSVEEAEQLMTLISAAREYEIEFIYAISPGLDITFSNPKEVSTLKRKLDQVSQFGCRSFALLFDDIDHNMCAADKEVFSSFAHAQVSITNEIYQYLGEPETFLFCPTEYCGTFCYPNVSQSPYLRTVGEKLLPGIEVLWTGPKVVSKEIPVESIEEVSKIIKRAPVIWDNIHANDYDQKRLFLGPYKGRSTELIPRLKGVLTNPNCEFEANYVAIHTLATWYK-SNMNGVRK 341 HSP 2 Score: 68.1662 bits (165), Expect = 1.822e-23 Identity = 31/106 (29.25%), Postives = 64/106 (60.38%), Query Frame = 3
Query: 1107 KPICSMDLQIICHFFYLPYENGAIAEAFVKGFEWLKDN--MIQFDEQPSD-EEVEEWKTKSTNFQKRCEELCKVFDRISNIPNQRVAGELEQYISAARDAINMLKS 1415
+P+ DLQ++ FYLPYE+G ++ F+WL+ N ++ + + D E++EEW++++ F++ C + +F R+SN N+ + ++ Y+ + ++M+KS
Sbjct: 551 EPVTLEDLQLLADLFYLPYEHGPKGAQMLREFQWLRANSSVVSVNCKGKDSEKIEEWRSRAAKFEEMCGLVMGMFTRLSNCANRTILYDMYSYVWDIKSIMSMVKS 656 HSP 3 Score: 60.8474 bits (146), Expect = 1.822e-23 Identity = 44/143 (30.77%), Postives = 61/143 (42.66%), Query Frame = 1
Query: 1456 DPEAWFFRGGVIGQMERLVPT--CNDF----KSTISTNQIQVIRPYTKDDLEEIYKLCNKNL-----LPVE---DYLADKEKHQDAFDRSLGAFADFEQCTASFVLEIDDEICGVIFGHSEAKTFYTHQSKHWLPKMMSKYSK 1842
D E W FRGG+ G+ +RL+P ND T+++ IRPY D +YK+C + LP + D + DK + C FVLE +D ICG G + F W+P M KY+K
Sbjct: 675 DQEPWAFRGGLAGEFQRLLPIDGANDLFFQPPPLTPTSKVYTIRPYFPKDEASVYKICREMYDDGVGLPFQSQPDLIGDKLVGGLLSLSL-------DYC---FVLEDEDGICGYALGTVDVTPFIKKCKISWIPFMQEKYTK 807 The following BLAST results are available for this feature:
BLAST of TCONS_00014546 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.