TCONS_00014542 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014542
Unique NameTCONS_00014542
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2373

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014542 ID=TCONS_00014542|Name=TCONS_00014542|organism=Clytia hemisphaerica|type=transcript|length=2373bp
GCGATGTTGCTAGTGTCGTTCACAGAGAACGCTGGCAGAATGGTGGCCAG
TTCTCAACATCGGCCTATATTTTCGTGCCCACTAGAGAAGCACATTGGCC
CATCTTACCAGCCCAGACTTTCGTCAAAGAGACTGGCAAGGAGTATGACG
ATCCCCTATTTATTTATTAAGTCACAATCAAACCACGACAGAACTCACAG
TGTCGCCTGAGGTTTCAATAGGCTTTGATAATCTCTTCCTTTTCGAACCT
CCTACTAAGGTCAAGACCCCGTCATACAAGTGTCAAACACTGTTTTCTGA
GTTCTGCACCAGCAGTTTTATACTGAGGAAAAGAATGATAAGAAAACCCC
AGTCTGCTTCATTGCAGTTATTCAACAGTCACCTTTTCACTCAGCGCTAC
TAAGGTCCCTTCTCTTTGTCCCGTCTACCTTCTCTTTGTCCCGTCTAGCT
TCTCTTTGTCCCGTCTACCTTCTTCTCTCTCTTTTGACTGTTTACTCCGC
AAGGTGATTCTTAATGACCCGGACGCTACCAAGGATGGTAGCTCGTTGAA
CGTTTGCAAGCAGTCTATCGAGCATTTGCTCGTCATTGATTACCAGTGAC
GATAGCTCTTTTACGTATATATCTTTCTCAAAGCTTCCCATAACACCCAT
CACAAGTGTGCATTGTTTCACGCTCCATTCCTGGTATTGCTTCATGAGGT
CCTGCAGTAGCATAGCGTACTTGTTCCTCTTTTCCCAGAGGGCTAGGTTC
AATCTGCTTTCCCAGGGACATGTCTGTTCGACTATTACGATCTTCTTTGT
CTCCTTAAAGAAGACAACCATATCGGGTCGTCGTTCAGTCATGTCAACCG
TAGTTACTATCACTGGATCCCACAGAACCTTAATCCTGTCATTCTCGAGC
ACCGGAGGAGGCGCTTTCCGTATTGCCGGAGCTTTCACTCCAAACAGGTC
ACACAATACTGAATGGACAGGTCGAAGAGCTTCATCATGCCGATTTTTGT
ACAGAGAGAACTTGTGCTTATCACACGCACTGAGGATATGGCCAACAGAC
TCTGGCTCTCTACCGCACCGTCGACAGATTGGGCTTATCTGTTCTTTGAG
GACTTCGCGACAATACTTCCTAGTTTTTAAAGTGCCGTCTTGAGCTACAG
TCATCTTAGCCTCATCAAATGGGGCCAAGAGCCCGTCAACTAACCATCTC
GAGCAATGTTCGATGCCCAGGGTTTCCATGTTTCTAAAGAATACCCCATG
GATGGCTTTTTCCCGGAGGCGCGCGACTCTCGCCTCTGTCTGTGTTCTCA
GAACAAGCCGGCCGAGCTTTCGTCTATCTGTCGCCTCTACGACTTGCATT
TCCCCATTTTGATTGCTCATAGATAGACGCCCAGACTCAGCTGCCATAGA
GATTGAATCGTAACTCTCTACAACAGCCCGGGTCCGAGAGACTAATGTCT
TTCGGTTTTGTTGATCGAGCTCATAAGATGCTTCCCAGATTTTACGTGGA
AAGTCACATGTAGCTGTTTGGCAATAAGATGCCAATGCTAGGAGTGCCTG
GTCCTCTAAATGGtcaagtttgagcagtttctcaacaatctaaaaaagca
ttgccacctcttcagcgtcaatccagagatctcactaaaccattcaatcg
gtagtagcgacgggcggtgtgtacaaagggcagggacgtaatcagggcaa
gctgatgacttgcacttactaggaattcctcgttcacgatcaataattgc
aatgatcgatccccatcacgttcgattttgctgaagattacccaaacctt
tcggtcaaggttaagactcgctgttagggttagggttagggttagggtta
gggttagggttagggttagggttagggttagggttagggttagggttagg
gttagggttaNGAGCGTTTGCATTACCTTCGCATCTGACGAAGTGAGTAG
ACACGGATCTGATGGATGGTTTGTGGCACTGGCACCTTGAGCAGAGATAG
GTAATATGAGCATTAGGATGACCCCTTTTAGTGTGCTTTAACCAAGACGC
ATGATCAGCGAAGTTGAGTTCACAACATCGATTGCCAATTGGCGGCTTCG
AATAGATATATTCGAAGTTAATTGTTCCGATATCCTGTAGGGTTATCCGG
TCCGGTCCAGGGTCTGCAACGTGTATGGGGTTACCGTTTATCtcatttaa
attttcattaggaacaATTGTTTTCGCTTGGATAGCAGGGTAAGAGAGAG
TCATAGTTACTCCCGCCGTTTACCcgcgcttggatgaatttcttcacttt
gacattcagagcactgggcagaaatcacattgcgtcaacatcgtttccga
ccatcgcaatgctttgttttaNN
Run BLAST on NCBI

transcript from alignment at sc0000190:2274..5241+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014542 ID=TCONS_00014542|Name=TCONS_00014542|organism=Clytia hemisphaerica|type=transcript|length=2968bp|location=Sequence derived from alignment at sc0000190:2274..5241+ (Clytia hemisphaerica)
GCGATGTTGCTAGTGTCGTTCACAGAGAACGCTGGCAGAATGGTGGCCAG
TTCTCAACATCGGCCTATATTTTCGTGCCCACTAGAGAAGCACATTGGCC
CATCTTACCAGCCCAGACTTTCGTCAAAGAGACTGGCAAGGAGTATGACG
ATCCCCTATTTATTTATTAAGTCACAATCAAACCACGACAGAACTCACAG
TGTCGCCTGAGGTTTCAATAGGCTTTGATAATCTCTTCCTTTTCGAACCT
CCTACTAAGGTCAAGACCCCGTCATACAAGTGTCAAACACTGTTTTCTGA
GTTCTGCACCAGCAGTTTTATACTGAGGAAAAGAATGATAAGAAAACCCC
AGTCTGCTTCATTGCAGTTATTCAACAGTCACCTTTTCACTCAGCGCTAC
TAAGGTCCCTTCTCTTTGTCCCGTCTACCTTCTCTTTGTCCCGTCTAGCT
TCTCTTTGTCCCGTCTACCTTCTTCTCTCTCTTTTGACTGTTTACTCCGC
AAGGTGATTCTTAATGACCCGGACGCTACCAAGGATGGTAGCTCGTTGAA
CGTTTGCAAGCAGTCTATCGAGCATTTGCTCGTCATTGATTACCAGTGAC
GATAGCTCTTTTACGTATATATCTTTCTCAAAGCTTCCCATAACACCCAT
CACAAGTGTGCATTGTTTCACGCTCCATTCCTGGTATTGCTTCATGAGGT
CCTGCAGTAGCATAGCGTACTTGTTCCTCTTTTCCCAGAGGGCTAGGTTC
AATCTGCTTTCCCAGGGACATGTCTGTTCGACTATTACGATCTTCTTTGT
CTCCTTAAAGAAGACAACCATATCGGGTCGTCGTTCAGTCATGTCAACCG
TAGTTACTATCACTGGATCCCACAGAACCTTAATCCTGTCATTCTCGAGC
ACCGGAGGAGGCGCTTTCCGTATTGCCGGAGCTTTCACTCCAAACAGGTC
ACACAATACTGAATGGACAGGTCGAAGAGCTTCATCATGCCGATTTTTGT
ACAGAGAGAACTTGTGCTTATCACACGCACTGAGGATATGGCCAACAGAC
TCTGGCTCTCTACCGCACCGTCGACAGATTGGGCTTATCTGTTCTTTGAG
GACTTCGCGACAATACTTCCTAGTTTTTAAAGTGCCGTCTTGAGCTACAG
TCATCTTAGCCTCATCAAATGGGGCCAAGAGCCCGTCAACTAACCATCTC
GAGCAATGTTCGATGCCCAGGGTTTCCATGTTTCTAAAGAATACCCCATG
GATGGCTTTTTCCCGGAGGCGCGCGACTCTCGCCTCTGTCTGTGTTCTCA
GAACAAGCCGGCCGAGCTTTCGTCTATCTGTCGCCTCTACGACTTGCATT
TCCCCATTTTGATTGCTCATAGATAGACGCCCAGACTCAGCTGCCATAGA
GATTGAATCGTAACTCTCTACAACAGCCCGGGTCCGAGAGACTAATGTCT
TTCGGTTTTGTTGATCGAGCTCATAAGATGCTTCCCAGATTTTACGTGGA
AAGTCACATGTAGCTGTTTGGCAATAAGATGCCAATGCTAGGAGTGCCTG
GTCCTCTAAATGGtcaagtttgagcagtttctcaacaatctaaaaaagca
ttgccacctcttcagcgtcaatccagagatctcactaaaccattcaatcg
gtagtagcgacgggcggtgtgtacaaagggcagggacgtaatcagggcaa
gctgatgacttgcacttactaggaattcctcgttcacgatcaataattgc
aatgatcgatccccatcacgttcgattttgctgaagattacccaaacctt
tcggtcaaggttaagactcgctgttagggttagggttagggttagggtta
gggttagggttagggttagggttagggttagggttagggttagggttagg
gttagggttaNGAGCGTTTGCATTACCTTCGCATCTGACGAAGTGAGTAG
ACACGGATCTGATGGATGGTTTGTGGCACTGGCACCTTGAGCAGAGATAG
GTAATATGAGCATTAGGATGACCCCTTTTAGTGTGCTTTAACCAAGACGC
ATGATCAGCGAAGTTGAGTTCACAACATCGATTGCCAATTGGCGGCTTCG
AATAGATATATTCGAAGTTAATTGTTCCGATATCCTGTAGGGTTATCCGG
TCCGGTCCAGGGTCTGCAACGTGTATGGGGTTACCGTTTATCtcatttaa
attttcattaggaacaATTGTTTTCGCTTGGATAGCAGGGTAAGAGAGAG
TCATAGTTACTCCCGCCGTTTACCcgcgcttggatgaatttcttcacttt
gacattcagagcaCTGNTCtcatttaaattttcattaggaacaATTGTTT
TCGCTTGGAGAGCAGGACCTCAAGGGGGAGTTAACCCCAGGAGACCCAGG
TGTAAGCTTTTCGAGGCGACCATTTGGAAATGGTACTTACGCGCCCGCTG
CGACCCGACGGGTTTTCCAGGCCCGACGGGACCCCATTTAGTCATTGGCA
TTTTCAGAGAACCTGAAAGGGATCAACTCTCACGCGAAGTGGGGAGCACT
TCTTCTAGAACGTTGACTAAGCTGAGGCTTCAGGAGGAGAGGTGGCAGAT
TATGCTTTGGACATCTTCTACGGCGACGCCCGGTGCTTTATTGGCTTTTT
GAAGTCAACATTGACAAAGTCCCCGAGGGTAACTAAGTCGGTCGACCGCC
CCACACCTGCACAATCCTCCTTAAGAGAGTCCTGAGAATCNGCGCTCGGT
GCTTTATTGGCTTTTTGAAGTCAACATTGACAAAGTCCCCGAGGGTAACT
AAGTCGGTCGACCACCCCACACCTGCACAATCCTCCTTAAGAGAGTCATA
GTTACTCCCACCGTTTACCcgcgcttggatgaatttcttcactttgacat
tcagagcactgggcagaaatcacattgcgtcaacatcgtttccgaccatc
gcaatgctttgttttaNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008148XLOC_008148Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014542-exon-sc0000190-1491911889:2274..4576TCONS_00014542-exon-sc0000190-1491911889:2274..4576Clytia hemisphaericaexon
TCONS_00014542-exon-sc0000190-1510915933:2274..4576TCONS_00014542-exon-sc0000190-1510915933:2274..4576Clytia hemisphaericaexon
TCONS_00014542-exon-sc0000190-1575043694:2274..4576TCONS_00014542-exon-sc0000190-1575043694:2274..4576Clytia hemisphaericaexon
TCONS_00014542-exon-sc0000190-1491911889:5172..5241TCONS_00014542-exon-sc0000190-1491911889:5172..5241Clytia hemisphaericaexon
TCONS_00014542-exon-sc0000190-1510915933:5172..5241TCONS_00014542-exon-sc0000190-1510915933:5172..5241Clytia hemisphaericaexon
TCONS_00014542-exon-sc0000190-1575043694:5172..5241TCONS_00014542-exon-sc0000190-1575043694:5172..5241Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000190supercontigsc0000190:2274..5241 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
422.622	551.905	876.728	1107.28	347.419	4875.57	2236.24	296.799	218.384	336.858	1204.26	348.163	265.757	503.543	413.671	233.567	1011.94	332.144	1143.91	176.22	241.524	338.947	405.914	282.903	600.864	566.812	672.201	970.98	385.277	468.641
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014542 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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